assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007726325.1_ASM772632v1	NZ_CP042003	Staphylococcus aureus strain B3-14B chromosome, complete genome	1	449949-450082	1	PILER-CR	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|68aa|up_8|NZ_CP042003.1_438154_438358_+,NA|98aa|up_0|NZ_CP042003.1_447028_447322_+,NA|103aa|down_2|NZ_CP042003.1_455216_455525_-,NA|89aa|down_3|NZ_CP042003.1_455668_455935_-	NA|426aa|up_9|NZ_CP042003.1_436681_437959_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|68aa|up_8|NZ_CP042003.1_438154_438358_+	NA	NA|608aa|up_7|NZ_CP042003.1_438870_440694_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP042003.1_440832_441249_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP042003.1_441479_442172_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_4|NZ_CP042003.1_442336_443101_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_3|NZ_CP042003.1_443257_443935_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP042003.1_443959_445513_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP042003.1_445629_446988_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|98aa|up_0|NZ_CP042003.1_447028_447322_+	NA	NA|952aa|down_0|NZ_CP042003.1_451189_454045_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_1|NZ_CP042003.1_454224_455091_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_2|NZ_CP042003.1_455216_455525_-	NA	NA|89aa|down_3|NZ_CP042003.1_455668_455935_-	NA	NA|584aa|down_4|NZ_CP042003.1_456218_457970_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_5|NZ_CP042003.1_458045_459239_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_6|NZ_CP042003.1_459334_460264_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_7|NZ_CP042003.1_460506_461280_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_8|NZ_CP042003.1_461391_462156_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_9|NZ_CP042003.1_462403_463189_+	pfam04507, DUF576, Csa1 family
GCF_007726325.1_ASM772632v1	NZ_CP042003	Staphylococcus aureus strain B3-14B chromosome, complete genome	2	453493-453626	2	PILER-CR	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|68aa|up_9|NZ_CP042003.1_438154_438358_+,NA|98aa|up_1|NZ_CP042003.1_447028_447322_+,NA|103aa|down_1|NZ_CP042003.1_455216_455525_-,NA|89aa|down_2|NZ_CP042003.1_455668_455935_-	NA|68aa|up_9|NZ_CP042003.1_438154_438358_+	NA	NA|608aa|up_8|NZ_CP042003.1_438870_440694_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP042003.1_440832_441249_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP042003.1_441479_442172_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP042003.1_442336_443101_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|226aa|up_4|NZ_CP042003.1_443257_443935_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP042003.1_443959_445513_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP042003.1_445629_446988_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|98aa|up_1|NZ_CP042003.1_447028_447322_+	NA	NA|1018aa|up_0|NZ_CP042003.1_447456_450510_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP042003.1_454224_455091_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_CP042003.1_455216_455525_-	NA	NA|89aa|down_2|NZ_CP042003.1_455668_455935_-	NA	NA|584aa|down_3|NZ_CP042003.1_456218_457970_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|398aa|down_4|NZ_CP042003.1_458045_459239_-	TIGR00675, Modification_methylase, DNA-methyltransferase (dcm)	NA|310aa|down_5|NZ_CP042003.1_459334_460264_+	pfam09019, EcoRII-C, EcoRII C terminal	NA|258aa|down_6|NZ_CP042003.1_460506_461280_+	pfam04507, DUF576, Csa1 family	NA|255aa|down_7|NZ_CP042003.1_461391_462156_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_CP042003.1_462403_463189_+	pfam04507, DUF576, Csa1 family	NA|452aa|down_9|NZ_CP042003.1_463185_464541_+	cd00519, Lipase_3, Lipase (class 3)
GCF_007726325.1_ASM772632v1	NZ_CP042003	Staphylococcus aureus strain B3-14B chromosome, complete genome	3	478090-478184	1	CRISPRCasFinder	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	TTGCTTCGCAACAACTGCATAAGAGCCT	28	0	0	NA	NA	NA	1	1	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|105aa|up_8|NZ_CP042003.1_469931_470246_-,NA|121aa|up_0|NZ_CP042003.1_477058_477421_+,NA|249aa|down_9|NZ_CP042003.1_487851_488598_-	NA|140aa|up_9|NZ_CP042003.1_467635_468055_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|105aa|up_8|NZ_CP042003.1_469931_470246_-	NA	NA|403aa|up_7|NZ_CP042003.1_470251_471460_-	cd07657, F-BAR_Fes_Fer, The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases	NA|128aa|up_6|NZ_CP042003.1_471526_471910_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|137aa|up_5|NZ_CP042003.1_472364_472775_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|133aa|up_4|NZ_CP042003.1_472801_473200_+	pfam07252, DUF1433, Protein of unknown function (DUF1433)	NA|141aa|up_3|NZ_CP042003.1_473671_474094_+	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|513aa|up_2|NZ_CP042003.1_474205_475744_-	pfam03806, ABG_transport, AbgT putative transporter family	NA|273aa|up_1|NZ_CP042003.1_475977_476796_+	PRK08589, PRK08589, SDR family oxidoreductase	NA|121aa|up_0|NZ_CP042003.1_477058_477421_+	NA	NA|274aa|down_0|NZ_CP042003.1_478369_479191_+	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|273aa|down_1|NZ_CP042003.1_479201_480020_+	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|434aa|down_2|NZ_CP042003.1_480012_481314_+	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|533aa|down_3|NZ_CP042003.1_481456_483055_+	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|312aa|down_4|NZ_CP042003.1_483067_484003_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_5|NZ_CP042003.1_483999_484869_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|down_6|NZ_CP042003.1_484865_485681_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|250aa|down_7|NZ_CP042003.1_485673_486423_+	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|398aa|down_8|NZ_CP042003.1_486434_487628_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|249aa|down_9|NZ_CP042003.1_487851_488598_-	NA
GCF_007726325.1_ASM772632v1	NZ_CP042003	Staphylococcus aureus strain B3-14B chromosome, complete genome	4	522437-522515	2	CRISPRCasFinder	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	1	522460-522492	NZ_CP042003.1_2770208-2770176	NA	1	1	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|220aa|up_3|NZ_CP042003.1_519361_520021_-,NA|36aa|up_0|NZ_CP042003.1_522009_522117_+,NA|56aa|down_2|NZ_CP042003.1_526572_526740_+	NA|693aa|up_9|NZ_CP042003.1_511817_513896_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP042003.1_514033_515443_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP042003.1_515728_516535_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP042003.1_516597_517254_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP042003.1_517366_517840_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP042003.1_517962_519174_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP042003.1_519361_520021_-	NA	NA|381aa|up_2|NZ_CP042003.1_520080_521223_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP042003.1_521489_521876_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP042003.1_522009_522117_+	NA	NA|588aa|down_0|NZ_CP042003.1_522820_524584_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP042003.1_524608_526342_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|56aa|down_2|NZ_CP042003.1_526572_526740_+	NA	NA|229aa|down_3|NZ_CP042003.1_526794_527481_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_4|NZ_CP042003.1_527458_528817_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_5|NZ_CP042003.1_528818_529826_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_6|NZ_CP042003.1_529803_530919_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_7|NZ_CP042003.1_530929_531622_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_8|NZ_CP042003.1_531632_532100_+	pfam06177, QueT, QueT transporter	NA|326aa|down_9|NZ_CP042003.1_532151_533129_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin
GCF_007726325.1_ASM772632v1	NZ_CP042003	Staphylococcus aureus strain B3-14B chromosome, complete genome	5	537814-537908	3	CRISPRCasFinder	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	GCCTTTCTAACAAATAAATTTGAAGAA	27	0	0	NA	NA	NA	1	1	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|40aa|up_0|NZ_CP042003.1_537515_537635_+,NA|35aa|down_2|NZ_CP042003.1_540082_540187_-	NA|453aa|up_9|NZ_CP042003.1_527458_528817_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_CP042003.1_528818_529826_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_CP042003.1_529803_530919_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_CP042003.1_530929_531622_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_CP042003.1_531632_532100_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_CP042003.1_532151_533129_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_CP042003.1_533130_534078_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_CP042003.1_534645_535575_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|437aa|up_1|NZ_CP042003.1_536110_537421_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|40aa|up_0|NZ_CP042003.1_537515_537635_+	NA	NA|289aa|down_0|NZ_CP042003.1_538049_538916_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP042003.1_539242_539929_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP042003.1_540082_540187_-	NA	NA|480aa|down_3|NZ_CP042003.1_540360_541800_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP042003.1_541920_542700_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP042003.1_542680_543400_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP042003.1_543396_544128_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP042003.1_544224_545475_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP042003.1_545729_546092_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP042003.1_546110_546710_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_007726325.1_ASM772632v1	NZ_CP042003	Staphylococcus aureus strain B3-14B chromosome, complete genome	6	654001-654086	4	CRISPRCasFinder	no	WYL	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	6	654031-654056|654031-654056|654031-654056|654031-654056|654031-654056|654031-654056	NZ_CP042003.1_1331622-1331597|NZ_CP042003.1_2128872-2128847|NZ_CP042003.1_862522-862547|NZ_CP042003.1_1600304-1600329|NZ_CP042003.1_2037241-2037266|NZ_CP042003.1_2124702-2124727	NA	1	1	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|110aa|up_8|NZ_CP042003.1_644398_644728_-,NA|78aa|up_1|NZ_CP042003.1_652816_653050_+,NA|65aa|down_6|NZ_CP042003.1_661146_661341_+	NA|291aa|up_9|NZ_CP042003.1_643081_643954_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|110aa|up_8|NZ_CP042003.1_644398_644728_-	NA	NA|246aa|up_7|NZ_CP042003.1_644776_645514_+	pfam02517, Abi, CAAX protease self-immunity	WYL|231aa|up_6|NZ_CP042003.1_645538_646231_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|266aa|up_5|NZ_CP042003.1_646615_647413_+	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	NA|308aa|up_4|NZ_CP042003.1_647569_648493_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|985aa|up_3|NZ_CP042003.1_649094_652049_+	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|158aa|up_2|NZ_CP042003.1_652048_652522_+	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|78aa|up_1|NZ_CP042003.1_652816_653050_+	NA	NA|213aa|up_0|NZ_CP042003.1_653209_653848_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|375aa|down_0|NZ_CP042003.1_654456_655581_+	PRK06753, PRK06753, hypothetical protein; Provisional	NA|318aa|down_1|NZ_CP042003.1_655672_656626_-	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|167aa|down_2|NZ_CP042003.1_656988_657489_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|141aa|down_3|NZ_CP042003.1_657725_658148_-	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|361aa|down_4|NZ_CP042003.1_658395_659478_+	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|467aa|down_5|NZ_CP042003.1_659572_660973_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|65aa|down_6|NZ_CP042003.1_661146_661341_+	NA	NA|270aa|down_7|NZ_CP042003.1_661409_662219_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|652aa|down_8|NZ_CP042003.1_662828_664784_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|248aa|down_9|NZ_CP042003.1_664809_665553_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family
GCF_007726325.1_ASM772632v1	NZ_CP042003	Staphylococcus aureus strain B3-14B chromosome, complete genome	7	817878-818028	5	CRISPRCasFinder	no	TnsE_C,csa3	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Type I-A	TGCATAAGAGCCCCTTACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|31aa|up_3|NZ_CP042003.1_816077_816170_-,NA|53aa|up_2|NZ_CP042003.1_816605_816764_-,NA|61aa|up_1|NZ_CP042003.1_816828_817011_+,NA|35aa|up_0|NZ_CP042003.1_817443_817548_+,NA|364aa|down_0|NZ_CP042003.1_818045_819137_-,NA|77aa|down_5|NZ_CP042003.1_822924_823155_+	NA|97aa|up_9|NZ_CP042003.1_810367_810658_+	pfam11867, DUF3387, Domain of unknown function (DUF3387)	NA|490aa|up_8|NZ_CP042003.1_810717_812187_+	pfam18185, STALD, Sir2- and TIR-associating SLOG family	NA|345aa|up_7|NZ_CP042003.1_812280_813315_+	pfam13676, TIR_2, TIR domain	NA|203aa|up_6|NZ_CP042003.1_813342_813951_+	pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)	NA|261aa|up_5|NZ_CP042003.1_814240_815023_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_4|NZ_CP042003.1_815090_815948_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_3|NZ_CP042003.1_816077_816170_-	NA	NA|53aa|up_2|NZ_CP042003.1_816605_816764_-	NA	NA|61aa|up_1|NZ_CP042003.1_816828_817011_+	NA	NA|35aa|up_0|NZ_CP042003.1_817443_817548_+	NA	NA|364aa|down_0|NZ_CP042003.1_818045_819137_-	NA	NA|327aa|down_1|NZ_CP042003.1_819402_820383_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP042003.1_820384_820705_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP042003.1_820856_821522_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP042003.1_821955_822894_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP042003.1_822924_823155_+	NA	NA|458aa|down_6|NZ_CP042003.1_823826_825200_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP042003.1_825657_826071_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP042003.1_826270_826714_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP042003.1_826834_827545_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_007726325.1_ASM772632v1	NZ_CP042003	Staphylococcus aureus strain B3-14B chromosome, complete genome	8	888782-888994	6	CRISPRCasFinder	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	47	0	0	NA	NA	NA	2	2	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|87aa|up_7|NZ_CP042003.1_883234_883495_-,NA|101aa|up_4|NZ_CP042003.1_885901_886204_-,NA|95aa|up_1|NZ_CP042003.1_887040_887325_-,NA|107aa|up_0|NZ_CP042003.1_888427_888748_-,NA|46aa|down_4|NZ_CP042003.1_891994_892132_+	NA|832aa|up_9|NZ_CP042003.1_880309_882805_-	pfam12846, AAA_10, AAA-like domain	NA|130aa|up_8|NZ_CP042003.1_882839_883229_-	pfam12648, TcpE, TcpE family	NA|87aa|up_7|NZ_CP042003.1_883234_883495_-	NA	NA|354aa|up_6|NZ_CP042003.1_883499_884561_-	pfam12642, TpcC, Conjugative transposon protein TcpC	NA|363aa|up_5|NZ_CP042003.1_884633_885722_-	pfam02486, Rep_trans, Replication initiation factor	NA|101aa|up_4|NZ_CP042003.1_885901_886204_-	NA	NA|112aa|up_3|NZ_CP042003.1_886207_886543_-	pfam06125, DUF961, Bacterial protein of unknown function (DUF961)	NA|101aa|up_2|NZ_CP042003.1_886581_886884_-	PRK11269, PRK11269, glyoxylate carboligase; Provisional	NA|95aa|up_1|NZ_CP042003.1_887040_887325_-	NA	NA|107aa|up_0|NZ_CP042003.1_888427_888748_-	NA	NA|216aa|down_0|NZ_CP042003.1_889027_889675_-	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only]	NA|495aa|down_1|NZ_CP042003.1_889702_891187_-	TIGR04265, bac_cardiolipin, cardiolipin synthase	NA|98aa|down_2|NZ_CP042003.1_891352_891646_+	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|70aa|down_3|NZ_CP042003.1_891657_891867_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|46aa|down_4|NZ_CP042003.1_891994_892132_+	NA	NA|401aa|down_5|NZ_CP042003.1_892395_893598_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|357aa|down_6|NZ_CP042003.1_893915_894986_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|452aa|down_7|NZ_CP042003.1_895000_896356_+	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|507aa|down_8|NZ_CP042003.1_896871_898392_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|232aa|down_9|NZ_CP042003.1_898744_899440_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_007726325.1_ASM772632v1	NZ_CP042003	Staphylococcus aureus strain B3-14B chromosome, complete genome	9	1209084-1209166	7	CRISPRCasFinder	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	GTAAGCTGACTTTTTCGTCAGCTTC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA,NA	NA|383aa|up_9|NZ_CP042003.1_1198607_1199756_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|408aa|up_8|NZ_CP042003.1_1199755_1200979_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|257aa|up_7|NZ_CP042003.1_1201022_1201793_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|165aa|up_6|NZ_CP042003.1_1201890_1202385_+	PRK00522, tpx, thiol peroxidase	NA|316aa|up_5|NZ_CP042003.1_1202507_1203455_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|401aa|up_4|NZ_CP042003.1_1203542_1204745_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|167aa|up_3|NZ_CP042003.1_1204991_1205492_-	pfam00582, Usp, Universal stress protein family	NA|373aa|up_2|NZ_CP042003.1_1205632_1206751_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|358aa|up_1|NZ_CP042003.1_1207048_1208122_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|230aa|up_0|NZ_CP042003.1_1208296_1208986_+	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|138aa|down_0|NZ_CP042003.1_1209491_1209905_-	pfam00582, Usp, Universal stress protein family	NA|433aa|down_1|NZ_CP042003.1_1210109_1211408_+	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|314aa|down_2|NZ_CP042003.1_1211777_1212719_+	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|1066aa|down_3|NZ_CP042003.1_1212739_1215937_+	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|410aa|down_4|NZ_CP042003.1_1216385_1217615_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|down_5|NZ_CP042003.1_1217809_1218667_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|down_6|NZ_CP042003.1_1218666_1219611_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|down_7|NZ_CP042003.1_1219879_1220848_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|586aa|down_8|NZ_CP042003.1_1220869_1222627_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|454aa|down_9|NZ_CP042003.1_1222970_1224332_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
GCF_007726325.1_ASM772632v1	NZ_CP042003	Staphylococcus aureus strain B3-14B chromosome, complete genome	10	2124449-2124529	8	CRISPRCasFinder	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	GGGAGTGGGAGAGAAATGATAAAGA	25	1	1	2124474-2124504	NZ_CP042003.1_2179459-2179429	NA	1	1	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|62aa|up_9|NZ_CP042003.1_2114060_2114246_+,NA|38aa|down_6|NZ_CP042003.1_2130172_2130286_-	NA|62aa|up_9|NZ_CP042003.1_2114060_2114246_+	NA	NA|553aa|up_8|NZ_CP042003.1_2114337_2115996_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|350aa|up_7|NZ_CP042003.1_2116056_2117106_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|466aa|up_6|NZ_CP042003.1_2117173_2118571_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|155aa|up_5|NZ_CP042003.1_2118721_2119186_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|414aa|up_4|NZ_CP042003.1_2119175_2120417_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_3|NZ_CP042003.1_2120531_2121839_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_2|NZ_CP042003.1_2121937_2122699_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_1|NZ_CP042003.1_2123026_2123878_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_0|NZ_CP042003.1_2124111_2124306_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|down_0|NZ_CP042003.1_2125113_2125935_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|down_1|NZ_CP042003.1_2125952_2126648_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|down_2|NZ_CP042003.1_2126640_2127666_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|down_3|NZ_CP042003.1_2127915_2128212_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|down_4|NZ_CP042003.1_2128204_2128591_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_5|NZ_CP042003.1_2129292_2130171_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_6|NZ_CP042003.1_2130172_2130286_-	NA	NA|127aa|down_7|NZ_CP042003.1_2130350_2130731_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_8|NZ_CP042003.1_2130888_2131245_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_9|NZ_CP042003.1_2131388_2131709_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains
GCF_007726325.1_ASM772632v1	NZ_CP042003	Staphylococcus aureus strain B3-14B chromosome, complete genome	11	2335922-2336030	9	CRISPRCasFinder	no		WYL,TnsE_C,csa3,DEDDh,cas3,DinG	Orphan	TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	39	0	0	NA	NA	NA	1	1	Orphan	WYL,TnsE_C,csa3,DEDDh,cas3,DinG	NA|239aa|up_5|NZ_CP042003.1_2330803_2331520_-,NA|169aa|up_4|NZ_CP042003.1_2331681_2332188_-,NA	NA|75aa|up_9|NZ_CP042003.1_2326926_2327151_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_CP042003.1_2327343_2328273_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_CP042003.1_2329220_2329595_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP042003.1_2329846_2330635_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP042003.1_2330803_2331520_-	NA	NA|169aa|up_4|NZ_CP042003.1_2331681_2332188_-	NA	NA|267aa|up_3|NZ_CP042003.1_2332323_2333124_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP042003.1_2333107_2333827_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP042003.1_2333881_2334832_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|NZ_CP042003.1_2334982_2335810_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP042003.1_2336199_2336835_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP042003.1_2337319_2338981_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|NZ_CP042003.1_2338977_2339361_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|337aa|down_3|NZ_CP042003.1_2339669_2340680_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_4|NZ_CP042003.1_2341178_2341700_-	pfam08741, YwhD, YwhD family	NA|432aa|down_5|NZ_CP042003.1_2341727_2343023_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_6|NZ_CP042003.1_2343062_2343539_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_7|NZ_CP042003.1_2343708_2344245_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_8|NZ_CP042003.1_2344690_2345629_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|209aa|down_9|NZ_CP042003.1_2345898_2346525_-	pfam04276, DUF443, Protein of unknown function (DUF443)
