The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP031271	Staphylococcus caprae strain 26D chromosome, complete genome	2662916	958694	970274	2662916	terminase,integrase	uncultured_Caudovirales_phage(46.15%)	17	960049:960064	965423:965438
WP_044466866.1|958694_958979_+	co-chaperone GroES	NA	A0A221S4A5	uncultured_virus	36.2	8.9e-13
WP_002445341.1|959048_960668_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.4	7.6e-157
960049:960064	attL	ATGGTGACGAAAATAA	NA	NA	NA	NA
WP_126510268.1|960736_961912_-|integrase	site-specific integrase	integrase	A0A2H4JBC4	uncultured_Caudovirales_phage	95.1	1.3e-211
WP_135019025.1|961925_962600_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	46.2	1.6e-39
WP_126510270.1|962772_962991_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	63.9	2.2e-19
WP_135019023.1|962995_963313_+	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	92.2	4.0e-46
WP_167495583.1|963309_963447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_135019021.1|963448_963661_+	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	62.5	6.4e-16
WP_135019019.1|963662_964022_+	pathogenicity island protein	NA	NA	NA	NA	NA
WP_135019017.1|964023_964365_+	hypothetical protein	NA	A0A2H4JBC6	uncultured_Caudovirales_phage	39.8	2.8e-13
WP_135019015.1|964461_966717_+	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	75.0	0.0e+00
965423:965438	attR	ATGGTGACGAAAATAA	NA	NA	NA	NA
WP_145375684.1|966999_967350_+	hypothetical protein	NA	A0A2H4JHE6	uncultured_Caudovirales_phage	72.5	2.6e-38
WP_135019011.1|967346_967988_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	77.5	7.5e-92
WP_002451505.1|968268_968613_+	hypothetical protein	NA	A0A1W6JQF3	Staphylococcus_phage	64.0	8.5e-34
WP_002451503.1|968966_969200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002451502.1|969211_969733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002451501.1|969794_970274_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	81.7	3.1e-66
>prophage 2
NZ_CP031271	Staphylococcus caprae strain 26D chromosome, complete genome	2662916	1113071	1154109	2662916	tRNA	Staphylococcus_phage(96.3%)	32	NA	NA
WP_002443518.1|1113071_1114481_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	63.0	7.7e-174
WP_002443516.1|1114470_1115472_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	53.3	3.1e-100
WP_037541567.1|1115468_1115717_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	88.0	2.0e-37
WP_037541521.1|1115788_1116262_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	57.1	1.6e-46
WP_145375731.1|1116242_1117025_+	prolyl oligopeptidase family serine peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	73.7	2.9e-106
WP_002443508.1|1117103_1118696_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	88.3	1.8e-280
WP_044466753.1|1119071_1120268_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	87.2	7.2e-197
WP_002443505.1|1120374_1121283_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	80.9	2.4e-107
WP_002443503.1|1121438_1122275_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	71.1	4.5e-113
WP_080981423.1|1122551_1122908_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	35.0	1.3e-08
WP_002443500.1|1122901_1123267_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	66.1	9.3e-39
WP_044466752.1|1123364_1123673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_037541519.1|1123966_1124680_+	transaldolase	NA	H8ZNI7	Synechococcus_phage	38.2	6.5e-20
WP_044466751.1|1124838_1125282_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	51.0	8.7e-23
WP_002443492.1|1125268_1125712_-	competence protein ComK	NA	NA	NA	NA	NA
WP_002443491.1|1125725_1126202_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	46.8	2.2e-32
WP_002443489.1|1126410_1126629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002443487.1|1126943_1127795_+	autolysin	NA	A0A1W6JNR1	Staphylococcus_phage	46.4	4.9e-30
WP_145375734.1|1128112_1129612_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	91.1	4.7e-20
WP_002443483.1|1130036_1131080_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	65.9	5.8e-134
WP_002443481.1|1131086_1131719_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	79.5	1.5e-89
WP_002443479.1|1131730_1132912_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	77.9	3.9e-179
WP_002443477.1|1132955_1133414_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	84.9	1.9e-60
WP_002443476.1|1133486_1134488_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	73.9	2.0e-139
WP_002443473.1|1134735_1135563_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_037541517.1|1136126_1136528_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_044466750.1|1136601_1137165_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	62.2	2.3e-60
WP_002443468.1|1137161_1138121_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	85.4	4.3e-67
WP_044466749.1|1138227_1139448_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	83.5	3.9e-182
WP_044466748.1|1139744_1142159_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	88.8	0.0e+00
WP_002443464.1|1142182_1142494_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.9	3.5e-34
WP_145375737.1|1142997_1154109_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	31.9	9.1e-52
>prophage 3
NZ_CP031271	Staphylococcus caprae strain 26D chromosome, complete genome	2662916	1409403	1419239	2662916		Bacillus_phage(42.86%)	11	NA	NA
WP_145375778.1|1409403_1410291_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.8	6.0e-39
WP_037541466.1|1410343_1410877_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_037541465.1|1410974_1411706_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	27.8	7.9e-05
WP_002442997.1|1411698_1412241_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	33.8	1.2e-10
WP_002442995.1|1412233_1412971_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002442993.1|1413106_1413832_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	40.9	4.6e-45
WP_002442991.1|1413815_1415579_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	32.4	4.4e-33
WP_037541463.1|1415851_1416391_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002433578.1|1416553_1416802_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	50.7	2.0e-16
WP_037541461.1|1416910_1417873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145375780.1|1417859_1419239_+	RecQ family ATP-dependent DNA helicase	NA	M1PGQ0	Moumouvirus	33.5	1.2e-57
>prophage 4
NZ_CP031271	Staphylococcus caprae strain 26D chromosome, complete genome	2662916	1778126	1847983	2662916	plate,capsid,integrase,terminase,tRNA,holin,protease,tail,portal	Staphylococcus_phage(71.43%)	95	1783874:1783891	1846745:1846762
WP_002442438.1|1778126_1780877_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	26.4	1.8e-86
WP_037541381.1|1781219_1781873_-	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_080981433.1|1781901_1782618_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_002442431.1|1782829_1783120_-	YggT family protein	NA	NA	NA	NA	NA
WP_002442429.1|1783131_1783740_-	cell division protein SepF	NA	NA	NA	NA	NA
WP_002442427.1|1783736_1784411_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
1783874:1783891	attL	CTTCTTTTTTATGTCTTA	NA	NA	NA	NA
WP_037541550.1|1784428_1785220_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_002442422.1|1785494_1786679_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_002442420.1|1786711_1788112_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_044466292.1|1788215_1789631_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
WP_002442417.1|1789646_1790996_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_044466293.1|1790997_1791963_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_002442413.1|1792144_1794481_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_002442411.1|1794461_1794863_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_037541375.1|1794875_1795811_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_002442408.1|1795825_1796257_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_002442407.1|1796400_1798014_-	bacillithiol biosynthesis cysteine-adding enzyme BshC	NA	NA	NA	NA	NA
WP_002442405.1|1798202_1798643_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_002442403.1|1798877_1799564_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA	NA
WP_002442402.1|1799682_1799817_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_002442400.1|1799865_1800000_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_002442398.1|1800053_1800188_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_002442396.1|1800223_1800358_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_002442394.1|1800395_1800530_-	beta-class phenol-soluble modulin	NA	NA	NA	NA	NA
WP_002442393.1|1801287_1802460_+	MFS transporter	NA	NA	NA	NA	NA
WP_145375838.1|1802660_1804043_-	CHAP domain-containing protein	NA	A1BU77	Staphylococcus_virus	89.3	5.5e-257
WP_002442389.1|1804042_1804309_-|holin	phage holin	holin	A0A1W6JPF8	Staphylococcus_phage	77.3	1.3e-34
WP_145375840.1|1804360_1804756_-	hypothetical protein	NA	A0A1W6JNM7	Staphylococcus_phage	55.7	9.2e-32
WP_002442385.1|1804742_1805165_-	hypothetical protein	NA	A0A1W6JNI9	Staphylococcus_phage	52.3	4.7e-34
WP_002442383.1|1805202_1805343_-	XkdX family protein	NA	NA	NA	NA	NA
WP_002442381.1|1805326_1805683_-	hypothetical protein	NA	W5RV37	Staphylococcus_phage	44.2	7.7e-22
WP_145375843.1|1805697_1807416_-|plate	BppU family phage baseplate upper protein	plate	A0A060AKT8	Staphylococcus_phage	57.5	2.4e-132
WP_002442377.1|1807415_1810079_-	hypothetical protein	NA	A0A060AKF8	Staphylococcus_phage	67.6	4.3e-290
WP_002442375.1|1810090_1810534_-	hypothetical protein	NA	Q4ZCD3	Staphylococcus_virus	39.0	1.3e-13
WP_002442374.1|1810526_1812098_-	peptidase	NA	A0A2H4J2R7	uncultured_Caudovirales_phage	67.0	3.1e-208
WP_002442372.1|1812106_1812943_-|tail	phage tail family protein	tail	A0A2H4J7E0	uncultured_Caudovirales_phage	49.5	3.9e-72
WP_044466295.1|1812957_1819134_-|tail	phage tail tape measure protein	tail	Q8LTH9	Staphylococcus_phage	53.7	1.4e-283
WP_002442368.1|1819148_1819307_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	62.7	3.5e-11
WP_044466296.1|1819357_1819699_-	hypothetical protein	NA	A0A0K1LKJ0	Staphylococcus_phage	62.8	7.9e-32
WP_002442364.1|1819740_1819968_-	hypothetical protein	NA	A0A1X9SIM4	Staphylococcus_phage	50.7	2.5e-10
WP_044466297.1|1819979_1820636_-|tail	tail protein	tail	A0A2I6PE59	Staphylococcus_phage	75.9	8.2e-86
WP_002442358.1|1820677_1821073_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	66.2	8.0e-44
WP_044466298.1|1821074_1821476_-	hypothetical protein	NA	R4WAN5	Staphylococcus_phage	74.4	1.8e-51
WP_002442353.1|1821472_1821835_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	43.9	4.6e-22
WP_002442352.1|1821815_1822115_-	hypothetical protein	NA	A0A2H4JAM0	uncultured_Caudovirales_phage	47.3	1.8e-16
WP_002442350.1|1822183_1823320_-|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	76.3	3.4e-156
WP_002442348.1|1823348_1824098_-|protease	Clp protease ClpP	protease	A0A1W6JPK0	Staphylococcus_phage	47.0	2.3e-60
WP_002442346.1|1824084_1825245_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	53.2	2.7e-116
WP_002442344.1|1825260_1826901_-|terminase	terminase large subunit	terminase	A0A059T7Q8	Listeria_phage	69.3	3.2e-227
WP_002442342.1|1826897_1827200_-	hypothetical protein	NA	Q4ZD78	Staphylococcus_phage	51.1	4.4e-18
WP_002442340.1|1827348_1827684_-	HNH endonuclease	NA	D2XR61	Bacillus_phage	55.5	4.1e-25
WP_002442338.1|1827818_1828253_-	transcriptional regulator	NA	B5WZN8	Staphylococcus_phage	88.1	1.3e-66
WP_002442336.1|1828265_1828412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145375845.1|1828429_1829029_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	41.7	5.1e-34
WP_002442333.1|1829185_1829356_-	hypothetical protein	NA	A0A1W6JPC7	Staphylococcus_phage	76.5	5.1e-16
WP_002442331.1|1829392_1829818_-	dUTP diphosphatase	NA	A0A1W6JNN6	Staphylococcus_phage	99.3	5.2e-73
WP_153227380.1|1829817_1829988_-	hypothetical protein	NA	A0A1W6JNR7	Staphylococcus_phage	100.0	6.3e-22
WP_126493813.1|1830031_1830124_-	DUF1024 family protein	NA	NA	NA	NA	NA
WP_002442327.1|1830125_1830302_-	hypothetical protein	NA	A0A1W6JNN8	Staphylococcus_phage	100.0	1.2e-28
WP_002442325.1|1830288_1830567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002442323.1|1830645_1831023_-	hypothetical protein	NA	A0A2R3ZXY5	Staphylococcus_phage	37.6	6.5e-11
WP_002442321.1|1831019_1831457_-	DNA N-6-adenine-methyltransferase	NA	A0A1W6JNN4	Staphylococcus_phage	99.2	8.5e-71
WP_002442319.1|1831453_1831861_-	hypothetical protein	NA	A0A2H4J9W1	uncultured_Caudovirales_phage	31.9	5.4e-11
WP_002442318.1|1831874_1832033_-	hypothetical protein	NA	A0A1W6JNP9	Staphylococcus_phage	98.1	1.4e-20
WP_002442316.1|1832035_1832224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002442314.1|1832213_1832444_-	DUF3310 domain-containing protein	NA	A0A0D4DCF1	Staphylococcus_phage	68.6	5.9e-23
WP_002442310.1|1832645_1832951_-	hypothetical protein	NA	H9A0Z8	Staphylococcus_phage	69.7	3.2e-32
WP_002442308.1|1833010_1833205_-	hypothetical protein	NA	A0A1W6JNR4	Staphylococcus_phage	96.9	9.7e-27
WP_002442307.1|1833197_1833605_-	DUF1064 domain-containing protein	NA	A0A1W6JNS0	Staphylococcus_phage	96.3	1.6e-71
WP_002442305.1|1833613_1833859_-	hypothetical protein	NA	A0A1W6JNN7	Staphylococcus_phage	98.8	3.0e-41
WP_002442304.1|1833861_1834017_-	hypothetical protein	NA	A0A1W6JNM0	Staphylococcus_phage	100.0	2.8e-21
WP_037541374.1|1834010_1834781_-	ATP-binding protein	NA	A0A1W6JNQ7	Staphylococcus_phage	95.7	8.3e-138
WP_145375847.1|1834791_1835577_-	replication protein	NA	A6M985	Geobacillus_virus	66.7	2.4e-39
WP_002442301.1|1835563_1836325_-	HNH endonuclease	NA	A0A125RNK0	Pseudomonas_phage	37.9	2.0e-35
WP_037541373.1|1836317_1836524_-	helix-turn-helix transcriptional regulator	NA	Q4ZC20	Staphylococcus_virus	66.2	1.6e-19
WP_002442299.1|1836529_1836760_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JPR2	Staphylococcus_phage	71.1	7.4e-26
WP_002442298.1|1836756_1837425_-	hypothetical protein	NA	A0A1W6JPR0	Staphylococcus_phage	79.6	6.4e-102
WP_002442297.1|1837425_1837974_-	HNH endonuclease	NA	A0A1W6JNF8	Staphylococcus_phage	81.3	2.4e-83
WP_095323484.1|1837986_1838487_-	single-stranded DNA-binding protein	NA	A0A0H3U303	Staphylococcus_phage	89.8	1.4e-82
WP_145375849.1|1838567_1839344_-	AAA family ATPase	NA	Q8SDW5	Staphylococcus_phage	86.9	6.2e-125
WP_002442294.1|1839344_1839830_-	siphovirus Gp157 family protein	NA	A0A2H4JCW3	uncultured_Caudovirales_phage	88.2	2.5e-71
WP_002442292.1|1839795_1840077_-	hypothetical protein	NA	A0A1W6JNM8	Staphylococcus_phage	96.2	3.1e-18
WP_162837223.1|1840138_1840312_-	hypothetical protein	NA	A0A1W6JNL3	Staphylococcus_phage	96.5	1.9e-21
WP_002442287.1|1840325_1840535_-	hypothetical protein	NA	A0A1W6JNP3	Staphylococcus_phage	94.2	2.6e-30
WP_002442285.1|1840623_1841100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002442282.1|1841062_1841296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002442280.1|1841334_1842126_-	phage antirepressor Ant	NA	A0A2H4J5J5	uncultured_Caudovirales_phage	80.6	1.9e-116
WP_009382133.1|1842125_1842320_-	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	89.1	1.1e-22
WP_145375852.1|1842583_1842922_+	helix-turn-helix domain-containing protein	NA	R4IH08	Staphylococcus_phage	74.5	2.2e-42
WP_037541370.1|1842935_1843607_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	46.6	5.0e-46
WP_002442272.1|1843633_1844209_+	hypothetical protein	NA	A0A2H4IYV6	uncultured_Caudovirales_phage	68.6	3.5e-16
WP_002442271.1|1844457_1845525_+	Abi family protein	NA	A0A2H4JB40	uncultured_Caudovirales_phage	50.7	2.4e-82
WP_002442268.1|1845588_1846635_+|integrase	site-specific integrase	integrase	A0A2H4J9L9	uncultured_Caudovirales_phage	73.0	1.2e-147
WP_002442266.1|1846893_1847403_-	metallophosphoesterase	NA	NA	NA	NA	NA
1846745:1846762	attR	CTTCTTTTTTATGTCTTA	NA	NA	NA	NA
WP_037541367.1|1847395_1847983_-	XTP/dITP diphosphatase	NA	D2KCJ6	Cassava_brown_streak_virus	31.1	5.8e-14
>prophage 5
NZ_CP031271	Staphylococcus caprae strain 26D chromosome, complete genome	2662916	1938089	1946559	2662916		Synechococcus_phage(33.33%)	9	NA	NA
WP_002442118.1|1938089_1938656_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	41.2	3.8e-31
WP_002442115.1|1938652_1939687_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.7	4.1e-63
WP_145375861.1|1939679_1941164_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.8	9.0e-48
WP_145375864.1|1941142_1943332_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.5	5.6e-139
WP_037541307.1|1943324_1943996_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002442107.1|1943997_1944258_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002442106.1|1944254_1944962_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	H8ZMN3	Synechococcus_phage	43.8	5.6e-48
WP_002442104.1|1944962_1946090_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_037541305.1|1946076_1946559_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	1.8e-21
>prophage 6
NZ_CP031271	Staphylococcus caprae strain 26D chromosome, complete genome	2662916	2186237	2195152	2662916		uncultured_Caudovirales_phage(71.43%)	8	NA	NA
WP_002441490.1|2186237_2187017_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	32.0	4.8e-16
WP_002441488.1|2187013_2187973_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	92.0	2.9e-15
WP_002441487.1|2187956_2188931_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	95.4	6.8e-161
WP_002441483.1|2189186_2190155_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	96.9	3.8e-180
WP_037541181.1|2190275_2192381_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	95.9	0.0e+00
WP_037541178.1|2192343_2192742_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	89.4	2.7e-63
WP_002441478.1|2193771_2194638_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002441476.1|2194651_2195152_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	72.3	4.5e-52
>prophage 7
NZ_CP031271	Staphylococcus caprae strain 26D chromosome, complete genome	2662916	2213190	2223084	2662916		Pandoravirus(11.11%)	12	NA	NA
WP_002441461.1|2213190_2214351_-	aminodeoxychorismate synthase component I	NA	A0A0B5J984	Pandoravirus	35.7	3.4e-26
WP_002441459.1|2214340_2214928_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.7	4.4e-38
WP_145375905.1|2215234_2215906_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	56.3	2.8e-65
WP_002441455.1|2215907_2216327_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	23.5	2.4e-06
WP_002441452.1|2216330_2217044_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	42.7	2.1e-50
WP_002441451.1|2217140_2217740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002441449.1|2218159_2218597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_037541172.1|2218650_2219124_+	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_002441446.1|2219098_2219788_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.0	3.7e-36
WP_002441443.1|2219790_2220846_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.4	2.8e-19
WP_002441441.1|2220915_2222025_-	glycosyltransferase family 2 protein	NA	A8CG95	Salmonella_phage	42.5	1.4e-61
WP_002441439.1|2222244_2223084_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.6	4.9e-59
>prophage 8
NZ_CP031271	Staphylococcus caprae strain 26D chromosome, complete genome	2662916	2304670	2378954	2662916	plate,capsid,integrase,terminase,tRNA,holin,tail,portal,head	Staphylococcus_phage(63.16%)	92	2294846:2294862	2322178:2322194
2294846:2294862	attL	TTATTTAAATGGTGAAA	NA	NA	NA	NA
WP_037541154.1|2304670_2305228_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0S2GLG4	Bacillus_phage	29.4	1.2e-16
WP_002441271.1|2305368_2305575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002441269.1|2305589_2305814_+	DUF2922 domain-containing protein	NA	NA	NA	NA	NA
WP_037541528.1|2306025_2306955_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002441265.1|2307485_2308451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002441263.1|2308850_2309225_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002441261.1|2309446_2310247_-	alpha/beta hydrolase	NA	A0A1D8EVD1	Mycobacterium_phage	25.6	4.6e-06
WP_037541153.1|2310485_2311202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002441257.1|2311462_2311972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002441255.1|2312167_2312974_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002441254.1|2312948_2313680_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_044466944.1|2313733_2314684_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002441250.1|2314777_2315677_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002441248.1|2315866_2316367_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_002441246.1|2316350_2316944_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_002441244.1|2317119_2317875_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002441242.1|2317929_2318565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002441240.1|2318657_2320319_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_037541149.1|2320315_2320732_-	DUF1934 family protein	NA	NA	NA	NA	NA
WP_002441235.1|2321167_2321560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002441233.1|2321660_2321900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002441231.1|2322356_2323625_+	nickel-dependent lactate racemase	NA	NA	NA	NA	NA
2322178:2322194	attR	TTTCACCATTTAAATAA	NA	NA	NA	NA
WP_037541147.1|2323643_2324471_+	ATP-dependent sacrificial sulfur transferase LarE	NA	NA	NA	NA	NA
WP_002441227.1|2324486_2325245_+	nickel pincer cofactor biosynthesis protein LarB	NA	NA	NA	NA	NA
WP_002441226.1|2325259_2326447_+	nickel pincer cofactor biosynthesis protein LarC	NA	NA	NA	NA	NA
WP_037541144.1|2326469_2326868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_037541142.1|2326978_2327485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002441222.1|2327568_2328867_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	28.9	3.6e-24
WP_002441220.1|2329035_2329512_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002441218.1|2329762_2330302_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_002441216.1|2330475_2330838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145375920.1|2331067_2332006_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_037541138.1|2332522_2332726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002441207.1|2332858_2333290_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_167495591.1|2333286_2333430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051673298.1|2333891_2335058_-	hypothetical protein	NA	A0A2H4J4K4	uncultured_Caudovirales_phage	72.0	7.8e-55
WP_030058969.1|2335066_2337076_-	N-6 DNA methylase	NA	A0A2H4JBT5	uncultured_Caudovirales_phage	88.0	0.0e+00
WP_030058967.1|2337252_2337438_-	XRE family transcriptional regulator	NA	A0A2H4J314	uncultured_Caudovirales_phage	78.7	7.5e-21
WP_145375922.1|2337439_2337550_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	88.9	4.6e-10
WP_145375924.1|2337620_2337773_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	76.0	8.7e-15
WP_145375927.1|2337912_2339370_-	CHAP domain-containing protein	NA	A0A0N6WMR3	Staphylococcus_phage	75.1	1.3e-216
WP_126493787.1|2339379_2339679_-|holin	phage holin	holin	Q4ZCR8	Staphylococcus_virus	68.0	8.8e-27
WP_126493788.1|2339724_2339871_-	XkdX family protein	NA	A0A2H4J8V3	uncultured_Caudovirales_phage	79.2	5.8e-16
WP_126493789.1|2339863_2340244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145375929.1|2340258_2341884_-|plate	BppU family phage baseplate upper protein	plate	A0A1W6JNS7	Staphylococcus_phage	94.0	3.2e-86
WP_126493792.1|2343893_2344280_-	hypothetical protein	NA	A0A1W6JNR6	Staphylococcus_phage	98.4	4.4e-63
WP_070872838.1|2344263_2344683_-	hypothetical protein	NA	A0A1W6JNR2	Staphylococcus_phage	100.0	4.2e-75
WP_126493793.1|2344698_2345859_-|plate	BppU family phage baseplate upper protein	plate	A0A1W6JNR8	Staphylococcus_phage	99.2	1.7e-214
WP_126493794.1|2345872_2347750_-	DUF2817 domain-containing protein	NA	A0A1W6JNS8	Staphylococcus_phage	99.2	0.0e+00
WP_126493795.1|2347750_2349010_-	hypothetical protein	NA	A0A1W6JNY1	Staphylococcus_phage	99.8	3.6e-239
WP_070872845.1|2349020_2349980_-|tail	phage tail family protein	tail	A0A1W6JNU3	Staphylococcus_phage	99.4	5.1e-185
WP_126493796.1|2349991_2353867_-|tail	phage tail protein	tail	A0A1W6JNU6	Staphylococcus_phage	95.7	1.5e-219
WP_126493797.1|2353881_2354226_-	hypothetical protein	NA	A0A1W6JNR9	Staphylococcus_phage	99.1	5.0e-58
WP_095323405.1|2354270_2354630_-|tail	phage tail protein	tail	A0A1W6JNQ1	Staphylococcus_phage	100.0	1.9e-60
WP_095323406.1|2354690_2355245_-|tail	phage major tail protein, TP901-1 family	tail	A0A1W6JNU0	Staphylococcus_phage	100.0	1.4e-94
WP_145375932.1|2355290_2355680_-	hypothetical protein	NA	A0A1W6JNQ3	Staphylococcus_phage	96.9	2.8e-65
WP_145375934.1|2355679_2356042_-	hypothetical protein	NA	A0A1W6JNQ6	Staphylococcus_phage	93.9	4.6e-54
WP_145375936.1|2356043_2356346_-	hypothetical protein	NA	A0A1W6JNQ9	Staphylococcus_phage	96.0	2.2e-49
WP_145375938.1|2356342_2356672_-|head,tail	phage head-tail connector protein	head,tail	A0A1W6JNR3	Staphylococcus_phage	99.1	4.6e-53
WP_145375940.1|2356673_2356943_-	hypothetical protein	NA	A0A1W6JNX0	Staphylococcus_phage	94.4	6.2e-40
WP_145375942.1|2356964_2357891_-|capsid	phage major capsid protein	capsid	A0A1W6JNT3	Staphylococcus_phage	99.7	1.5e-173
WP_126493804.1|2357908_2358523_-	DUF4355 domain-containing protein	NA	A0A1W6JNT6	Staphylococcus_phage	100.0	3.2e-39
WP_167495592.1|2358770_2358923_-	hypothetical protein	NA	A0A1W6JNR0	Staphylococcus_phage	90.0	3.2e-17
WP_167495593.1|2358909_2359068_-	hypothetical protein	NA	A0A1W6JNP6	Staphylococcus_phage	90.4	3.9e-18
WP_145375944.1|2359067_2360018_-|capsid	minor capsid protein	capsid	A0A2H4IYR8	uncultured_Caudovirales_phage	87.4	6.6e-153
WP_145375946.1|2360024_2361521_-|portal	phage portal protein	portal	A0A1W6JNG9	Staphylococcus_phage	92.4	1.6e-270
WP_145375947.1|2361534_2362815_-|terminase	PBSX family phage terminase large subunit	terminase	I1W649	Staphylococcus_phage	85.4	4.8e-215
WP_145375949.1|2362801_2363248_-|terminase	terminase small subunit	terminase	A0A1J0MFQ9	Staphylococcus_phage	89.6	4.9e-66
WP_145376066.1|2363492_2363894_-	hypothetical protein	NA	H9A0U2	Staphylococcus_phage	90.2	6.0e-63
WP_145375951.1|2363967_2364135_-	transcriptional regulator	NA	A0A1W6JNK3	Staphylococcus_phage	75.9	2.5e-15
WP_145375953.1|2364171_2364696_-	dUTP pyrophosphatase	NA	A0A2H4JCG3	uncultured_Caudovirales_phage	71.8	1.8e-59
WP_167495594.1|2364688_2364859_-	hypothetical protein	NA	Q4ZD37	Staphylococcus_phage	56.1	2.6e-07
WP_145375955.1|2364851_2365220_-	hypothetical protein	NA	A1BU09	Staphylococcus_virus	42.0	4.7e-30
WP_145375957.1|2365216_2365582_-	hypothetical protein	NA	Q4ZC09	Staphylococcus_virus	43.7	6.1e-14
WP_145375959.1|2365568_2365778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145375961.1|2365790_2366159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_145375963.1|2366162_2367044_-	DnaD domain protein	NA	A0EWX4	Staphylococcus_phage	76.2	4.2e-101
WP_145375965.1|2367076_2367547_-	single-stranded DNA-binding protein	NA	A0A2H4J3T1	uncultured_Caudovirales_phage	82.1	3.5e-54
WP_145375967.1|2367547_2368180_-	MBL fold metallo-hydrolase	NA	A0A1Q1PW06	Staphylococcus_phage	70.5	3.2e-79
WP_145375969.1|2368245_2369169_-	recombinase	NA	H9A0L3	Staphylococcus_phage	95.4	1.1e-125
WP_145375971.1|2369170_2371123_-	ATPase	NA	A0A0N9SKM4	Staphylococcus_phage	62.6	8.4e-219
WP_145375973.1|2371521_2372178_+	hypothetical protein	NA	A0A2H4J4L8	uncultured_Caudovirales_phage	96.3	1.8e-112
WP_167495595.1|2372626_2372776_-	hypothetical protein	NA	Q4ZC32	Staphylococcus_virus	61.2	5.5e-06
WP_167495596.1|2372864_2373041_-	hypothetical protein	NA	H9A0Y2	Staphylococcus_phage	57.1	9.1e-08
WP_145375975.1|2373056_2373824_-	Rha family transcriptional regulator	NA	A0A141VTQ8	Staphylococcus_phage	71.9	4.9e-98
WP_145375977.1|2373837_2374062_-	helix-turn-helix domain-containing protein	NA	A0A2H4JEA4	uncultured_Caudovirales_phage	95.9	1.6e-33
WP_070487471.1|2374219_2374549_+	helix-turn-helix domain-containing protein	NA	A0A2H4J5G9	uncultured_Caudovirales_phage	99.1	5.4e-54
WP_145375979.1|2374563_2375028_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A1W6JNP2	Staphylococcus_phage	93.5	2.0e-78
WP_145375981.1|2375041_2375497_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	68.2	9.8e-54
WP_145375982.1|2375510_2376299_+	DUF1828 domain-containing protein	NA	Q4ZCC0	Staphylococcus_virus	85.4	5.7e-126
WP_145375984.1|2376355_2377729_+	recombinase family protein	NA	A1BU80	Staphylococcus_virus	76.7	2.3e-202
WP_167495597.1|2377736_2378954_+	FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	45.4	9.3e-91
>prophage 9
NZ_CP031271	Staphylococcus caprae strain 26D chromosome, complete genome	2662916	2599719	2614007	2662916	terminase,integrase	uncultured_Caudovirales_phage(66.67%)	25	2607528:2607543	2614764:2614779
WP_145376016.1|2599719_2600289_-|terminase	terminase small subunit	terminase	A0A2H4JBF3	uncultured_Caudovirales_phage	81.6	1.9e-83
WP_049401931.1|2600290_2600629_-	transcriptional regulator	NA	A0A2H4JEH8	uncultured_Caudovirales_phage	92.0	6.4e-50
WP_145376019.1|2600625_2601063_-	pathogenicity island protein	NA	A0A2H4JBD6	uncultured_Caudovirales_phage	96.6	1.0e-71
WP_145376021.1|2601114_2601327_-	hypothetical protein	NA	A0A2H4JHW4	uncultured_Caudovirales_phage	60.9	1.7e-13
WP_049401971.1|2601326_2601914_-	pathogenicity island protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	76.5	4.5e-75
WP_002476284.1|2601995_2602328_-	hypothetical protein	NA	A0A2H4JHK4	uncultured_Caudovirales_phage	99.1	4.2e-54
WP_145376024.1|2602695_2603280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049402099.1|2603340_2603862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049402098.1|2604172_2605885_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	87.7	2.1e-290
WP_049402097.1|2605897_2606800_-	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	43.2	1.9e-64
WP_049402096.1|2606844_2607180_-	hypothetical protein	NA	A0A2H4JBC6	uncultured_Caudovirales_phage	94.9	2.7e-32
WP_002467971.1|2607192_2607399_-	hypothetical protein	NA	A0A2H4JHP9	uncultured_Caudovirales_phage	98.5	4.9e-29
WP_145376026.1|2607403_2607808_-	pathogenicity island protein	NA	A0A2H4JBF1	uncultured_Caudovirales_phage	94.8	8.4e-65
2607528:2607543	attL	ATTTCTTTATCTTCAT	NA	NA	NA	NA
WP_167495598.1|2607809_2607956_-	hypothetical protein	NA	A0A2H4JB03	uncultured_Caudovirales_phage	65.2	4.1e-06
WP_145376029.1|2607969_2608353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096389413.1|2608372_2608645_-	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	45.0	1.0e-10
WP_145376031.1|2608645_2608867_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_145376033.1|2609039_2609612_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002468636.1|2609688_2609922_+	hypothetical protein	NA	Q4ZCB8	Staphylococcus_virus	72.7	1.5e-26
WP_145376035.1|2609945_2611169_+|integrase	tyrosine-type recombinase/integrase	integrase	Q4ZE80	Staphylococcus_phage	79.5	2.0e-178
WP_001831354.1|2611395_2611638_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_002445148.1|2611685_2612195_-	single-stranded DNA-binding protein	NA	A0A2H4JCF2	uncultured_Caudovirales_phage	86.4	9.0e-64
WP_002445146.1|2612216_2612513_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_002445144.1|2612925_2613741_+	lysozyme	NA	A0A291I9H5	Lactobacillus_phage	45.0	8.8e-37
WP_002445142.1|2613815_2614007_+	hypothetical protein	NA	A0A2H4JGI3	uncultured_Caudovirales_phage	80.0	6.4e-23
2614764:2614779	attR	ATTTCTTTATCTTCAT	NA	NA	NA	NA
