The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	2752396	748265	801449	2752396	tail,holin,protease,tRNA	Staphylococcus_phage(71.88%)	54	NA	NA
WP_010956572.1|748265_748700_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_001086743.1|748680_749343_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_000372758.1|749315_749780_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_000159054.1|749772_750798_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.2	1.4e-63
WP_000106331.1|750899_752510_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.9	3.3e-19
WP_001792272.1|753249_753378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000602053.1|753522_755451_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	30.2	9.3e-53
WP_001283612.1|755703_756339_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_072353927.1|756693_757722_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581077.1|757781_758006_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_111124536.1|758213_759464_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.0	1.0e-39
WP_000790325.1|759646_760597_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_000141416.1|760745_762230_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.4	1.5e-18
WP_001253309.1|762226_763186_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000688498.1|763554_764271_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	3.0e-25
WP_145326030.1|764289_765573_-	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_001094921.1|765602_765746_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA	NA
WP_001105696.1|765748_766312_-	accessory gene regulator ArgB-like protein	NA	NA	NA	NA	NA
WP_001549197.1|766547_766682_+	delta-lysin family phenol-soluble modulin	NA	NA	NA	NA	NA
WP_000867951.1|767281_768067_-	carbon-nitrogen family hydrolase	NA	NA	NA	NA	NA
WP_000522384.1|768427_769054_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_145326032.1|769250_770483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000197644.1|770507_771251_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000917289.1|771427_771712_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240642.1|771787_773404_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_001045085.1|773937_775245_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000361985.1|776131_776575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000206637.1|777297_778521_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000791404.1|778956_780009_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	2.5e-36
WP_000595325.1|780030_781047_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	3.0e-26
WP_000114226.1|782215_782620_+	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000565498.1|782616_783024_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268735.1|783024_783669_+|tail	phage tail protein	tail	A0EWZ9	Staphylococcus_phage	100.0	3.8e-120
WP_071621395.1|783710_783935_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|783984_784335_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_000504557.1|784579_789124_+|tail	phage tail tape measure protein	tail	A0A075M036	Staphylococcus_phage	99.4	0.0e+00
WP_000567393.1|789120_790605_+|tail	phage tail protein	tail	A0A075LZV5	Staphylococcus_phage	100.0	5.3e-298
WP_000582184.1|790620_794406_+	hypothetical protein	NA	D2JLF9	Staphylococcus_phage	97.8	0.0e+00
WP_000654329.1|794395_794548_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	98.0	1.2e-19
WP_001040255.1|794594_794882_+	hypothetical protein	NA	A0A075LZJ6	Staphylococcus_phage	100.0	5.8e-44
WP_000340977.1|794937_795312_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_000034846.1|795723_796506_+	staphylococcal enterotoxin type P	NA	A0A075M4C7	Staphylococcus_phage	99.6	1.6e-149
WP_011447039.1|796708_796885_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_031762631.1|796937_797045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|797096_797351_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|797362_798118_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920038.1|798308_798800_+	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_001793418.1|799246_799402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791825.1|799328_799583_+	hypothetical protein	NA	Q4ZCK0	Staphylococcus_virus	93.0	8.0e-13
WP_001110820.1|799489_799786_+	peptidoglycan hydrolase	NA	A0A1P8L6B4	Staphylococcus_phage	95.9	1.6e-49
WP_000702263.1|800295_800646_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|800698_800959_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_001789576.1|800937_801246_-	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	3.2e-40
WP_000669791.1|801269_801449_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
>prophage 2
NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	2752396	903025	949422	2752396	protease,tRNA	Staphylococcus_phage(87.5%)	48	NA	NA
WP_001793998.1|903025_904168_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|904172_904643_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251226.1|904801_905401_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|905425_905578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901023.1|906354_906750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116231.1|906945_908331_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|908783_909605_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437968.1|909767_910880_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045133.1|910901_911525_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|911880_912345_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992523.1|912523_913648_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|913716_914061_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001789044.1|914333_914540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001802255.1|914553_914652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_145326050.1|914942_916139_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584638.1|916128_919065_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|919061_920003_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782127.1|920123_921086_-	foldase	NA	NA	NA	NA	NA
WP_000477954.1|921290_921848_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|922580_922946_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|923087_923510_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216879.1|923643_924384_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	2.7e-24
WP_000551840.1|924376_925600_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|925723_926227_-	signal transduction protein TraP	NA	NA	NA	NA	NA
WP_001790154.1|926389_926500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|926489_927527_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162886.1|927584_928508_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167554.1|928531_929932_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_001838001.1|929872_930160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000132890.1|930253_930808_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000206350.1|933264_934053_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
WP_001086056.1|934065_934521_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.2	6.3e-61
WP_000473596.1|935416_936352_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_145326052.1|936353_937337_+	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	2.0e-184
WP_000543845.1|937706_938498_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000550250.1|938502_938976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000469595.1|939231_939450_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	81.9	1.4e-26
WP_001092757.1|939930_940512_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	62.7	2.6e-51
WP_001039428.1|941475_942183_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	98.7	1.4e-128
WP_001039444.1|942307_943030_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
WP_001038870.1|943087_943807_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.6	1.6e-130
WP_001038704.1|943927_944647_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|944595_944703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038735.1|944804_945521_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.2	1.8e-131
WP_001038715.1|945671_946391_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	5.4e-131
WP_031865257.1|946455_946590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000028653.1|946754_948311_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	2.6e-287
WP_000072558.1|948303_949422_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.1	7.6e-39
>prophage 3
NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	2752396	954655	985010	2752396	protease	Staphylococcus_phage(93.33%)	34	NA	NA
WP_000864138.1|954655_955213_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.2	3.5e-77
WP_000414212.1|955410_955983_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_000627548.1|956083_956425_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	1.0e-55
WP_000669019.1|956465_957092_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	96.6	2.9e-96
WP_000070647.1|957167_958163_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.0	2.1e-69
WP_001837992.1|958243_958894_-	hypothetical protein	NA	A0A2H4PQM8	Staphylococcus_phage	98.1	1.5e-55
WP_072361838.1|959196_959652_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	6.7e-79
WP_000348369.1|959810_961289_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	98.0	1.6e-283
WP_000778537.1|961293_962295_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.8	5.1e-188
WP_000718107.1|962291_962549_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672015.1|962614_963088_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
WP_072361841.1|963092_963839_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.6	2.9e-143
WP_000109906.1|964091_965684_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|966055_967249_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_043854763.1|967373_968282_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	4.9e-137
WP_000453314.1|968493_969327_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
WP_000623476.1|969709_970063_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	98.3	2.0e-22
WP_001200542.1|970059_970425_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091442.1|970680_970983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|971242_971956_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|972395_973031_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|973326_973770_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153742.1|973756_974200_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671052.1|974312_974783_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_000384171.1|974981_975206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|975481_976336_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989121.1|976422_977715_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221175.1|977714_978029_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	97.1	2.8e-52
WP_001261668.1|978551_980054_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000384181.1|980547_981579_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_000493886.1|981585_982218_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_001175484.1|982228_983410_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.5e-226
WP_001008551.1|983422_983887_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|984008_985010_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 4
NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	2752396	988171	1000900	2752396	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_000764419.1|988171_988735_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|988731_989685_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|989794_990976_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001108730.1|991266_993681_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_000836465.1|993702_994014_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_145326056.1|994339_1000900_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	97.1	4.1e-302
>prophage 5
NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	2752396	1201040	1209370	2752396	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217245.1|1201040_1202858_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
WP_001283055.1|1203081_1204188_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624571.1|1204318_1204996_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683935.1|1204998_1206099_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062177.1|1206212_1207559_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924220.1|1207568_1208459_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001213908.1|1208584_1209370_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 6
NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	2752396	1679689	1737481	2752396	portal,holin,capsid,tail,tRNA,terminase,head,plate	Staphylococcus_phage(72.13%)	76	NA	NA
WP_000908977.1|1679689_1682092_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_000003566.1|1682091_1683150_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
WP_000435370.1|1683530_1684271_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_031835094.1|1684510_1684618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000670946.1|1684654_1684978_-	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA	NA
WP_001242419.1|1684996_1685731_-	class B sortase	NA	NA	NA	NA	NA
WP_145326120.1|1685792_1686761_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_001220204.1|1686770_1687649_-	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA	NA
WP_001806916.1|1687645_1688722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000789821.1|1688721_1689405_-	heme uptake protein IsdC	NA	NA	NA	NA	NA
WP_000160862.1|1689613_1690666_+	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA	NA
WP_001041604.1|1690868_1692794_+	heme uptake protein IsdB	NA	NA	NA	NA	NA
WP_000971220.1|1692963_1693419_-	hypothetical protein	NA	B7T0L3	Staphylococcus_virus	100.0	2.7e-72
WP_000448197.1|1693415_1694003_-	hypothetical protein	NA	Q4ZBG7	Staphylococcus_virus	100.0	5.4e-97
WP_031864827.1|1694392_1695838_-	CHAP domain-containing protein	NA	A0EWV1	Staphylococcus_virus	99.8	2.4e-295
WP_000354119.1|1695818_1696256_-|holin	phage holin	holin	A0EWV0	Staphylococcus_virus	100.0	1.1e-73
WP_000398863.1|1696311_1696707_-	hypothetical protein	NA	A0EWU9	Staphylococcus_virus	100.0	2.1e-68
WP_145326122.1|1696712_1697885_-|plate	BppU family phage baseplate upper protein	plate	A0EWU8	Staphylococcus_virus	99.5	1.6e-196
WP_000524051.1|1697897_1699772_-	CHAP domain-containing protein	NA	A0A2I6PCX0	Staphylococcus_phage	98.7	0.0e+00
WP_000466785.1|1699908_1700208_-	DUF2951 family protein	NA	A0EWU6	Staphylococcus_virus	91.9	1.9e-42
WP_015990323.1|1700248_1700422_-	XkdX family protein	NA	B2ZZ00	Staphylococcus_phage	100.0	1.0e-27
WP_000705919.1|1700431_1700809_-	DUF2977 domain-containing protein	NA	A0A2H4PQW4	Staphylococcus_phage	100.0	5.3e-61
WP_145326124.1|1700808_1702632_-|plate	BppU family phage baseplate upper protein	plate	Q4ZDD5	Staphylococcus_virus	96.5	1.4e-287
WP_017804815.1|1702631_1704530_-	hypothetical protein	NA	Q4ZBQ2	Staphylococcus_phage	99.1	0.0e+00
WP_001122001.1|1704542_1706429_-	peptidase	NA	Q4ZBQ3	Staphylococcus_phage	100.0	0.0e+00
WP_000560178.1|1706439_1707381_-|tail	phage tail protein	tail	A1KXA7	Staphylococcus_virus	99.7	2.6e-181
WP_000379445.1|1707395_1710281_-	hypothetical protein	NA	A0A0E3T8J3	Staphylococcus_phage	99.7	0.0e+00
WP_000880588.1|1710284_1710569_-	hypothetical protein	NA	A0A0E3TAI0	Staphylococcus_phage	98.9	1.5e-44
WP_000134337.1|1710613_1711120_-	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_000057582.1|1711186_1711744_-|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_000270190.1|1711744_1712170_-	DUF3168 domain-containing protein	NA	A0A0E3XBP2	Staphylococcus_phage	100.0	1.2e-74
WP_001151323.1|1712182_1712590_-	HK97 gp10 family phage protein	NA	A0A0E3T8J0	Staphylococcus_phage	100.0	3.4e-74
WP_000483041.1|1712576_1712912_-|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
WP_000177348.1|1712923_1713274_-|head,tail	phage head-tail adapter protein	head,tail	A0A0E3T9I9	Staphylococcus_phage	100.0	1.9e-60
WP_000235168.1|1713434_1714349_-|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_001019219.1|1714365_1714950_-	DUF4355 domain-containing protein	NA	A0A0N7E0U8	Staphylococcus_phage	100.0	1.3e-77
WP_000184128.1|1715045_1715996_-	hypothetical protein	NA	A0A0E3TAH5	Staphylococcus_phage	99.4	2.8e-175
WP_000177423.1|1715964_1717389_-|portal	phage portal protein	portal	Q4ZBZ7	Staphylococcus_virus	99.8	3.1e-271
WP_001037578.1|1717385_1718609_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
WP_000594080.1|1718601_1719096_-	hypothetical protein	NA	A0A059T7P8	Staphylococcus_phage	99.4	1.1e-74
WP_000286968.1|1719450_1719852_-	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_000166075.1|1719852_1720026_-	transcriptional activator RinB	NA	A0A0H4ISR0	Staphylococcus_phage	100.0	3.7e-22
WP_000195791.1|1720022_1720229_-	DUF1381 domain-containing protein	NA	A0A0H4IPW6	Staphylococcus_phage	100.0	4.5e-30
WP_001282070.1|1720225_1720471_-	hypothetical protein	NA	A0A0H4ITX2	Staphylococcus_phage	100.0	2.0e-37
WP_000181822.1|1720507_1721041_-	dUTP pyrophosphatase	NA	Q4ZCN7	Staphylococcus_virus	100.0	7.1e-96
WP_047213620.1|1721033_1721282_-	DUF1024 family protein	NA	A0A2K9VBU0	Staphylococcus_phage	98.8	2.0e-37
WP_145326126.1|1721274_1721550_-	hypothetical protein	NA	Q4ZCN9	Staphylococcus_virus	97.8	9.5e-44
WP_001808043.1|1721549_1721960_-	hypothetical protein	NA	Q4ZCP0	Staphylococcus_virus	100.0	8.0e-71
WP_001126836.1|1721970_1722219_-	hypothetical protein	NA	A0A2I6PDI0	Staphylococcus_phage	100.0	3.2e-43
WP_031807829.1|1722219_1722579_-	phage protein	NA	Q4ZBU0	Staphylococcus_virus	96.6	4.2e-60
WP_001187236.1|1722579_1722765_-	DUF3113 family protein	NA	A0A068A236	Staphylococcus_phage	95.1	7.8e-26
WP_145326128.1|1722769_1723174_-	DUF1064 domain-containing protein	NA	A0A059T5A5	Staphylococcus_phage	97.0	3.5e-71
WP_001123681.1|1723183_1723405_-	DUF3269 family protein	NA	A0A2H4PQI9	Staphylococcus_phage	100.0	2.2e-35
WP_031927495.1|1723418_1723577_-	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	96.2	1.3e-21
WP_070225381.1|1723570_1724350_-	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	99.6	1.9e-145
WP_115288693.1|1724359_1725130_-	replication protein	NA	A0A0N6WMQ8	Staphylococcus_phage	99.2	2.0e-115
WP_000371250.1|1725194_1726052_+	DUF4393 domain-containing protein	NA	Q4ZBL8	Staphylococcus_phage	100.0	9.5e-159
WP_001199439.1|1726157_1726829_-	hypothetical protein	NA	A7TWM9	Staphylococcus_phage	100.0	2.0e-127
WP_011447037.1|1726841_1727342_-	single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	7.2e-90
WP_001288247.1|1727426_1728200_-	AAA family ATPase	NA	A0EWP9	Staphylococcus_virus	100.0	1.6e-141
WP_000002516.1|1728199_1728679_-	siphovirus Gp157 family protein	NA	A0A0H4J328	Staphylococcus_phage	100.0	1.1e-82
WP_107386909.1|1728693_1728954_-	DUF1108 family protein	NA	E9LT80	Staphylococcus_phage	98.8	2.0e-43
WP_000066026.1|1729047_1729209_-	DUF1270 family protein	NA	C8CGY5	Staphylococcus_phage	100.0	2.5e-20
WP_000395457.1|1729388_1729619_+	hypothetical protein	NA	R4IG40	Staphylococcus_phage	100.0	2.3e-35
WP_000390105.1|1729822_1730017_-	hypothetical protein	NA	E9LT75	Staphylococcus_phage	100.0	1.2e-29
WP_001002760.1|1730033_1730798_-	phage antirepressor Ant	NA	R4IFK0	Staphylococcus_phage	99.6	2.7e-141
WP_000108122.1|1730797_1730992_-	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_001055143.1|1731255_1731588_+	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000775187.1|1731604_1732279_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_000392109.1|1732472_1733153_+	hypothetical protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
WP_000861313.1|1733358_1734744_+	recombinase family protein	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
WP_000290472.1|1734860_1735034_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_001791487.1|1734977_1735202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000872158.1|1735113_1735671_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000843612.1|1735797_1736937_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000401377.1|1736998_1737481_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
>prophage 7
NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	2752396	1789161	1797634	2752396		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238664.1|1789161_1789728_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030812.1|1789730_1790759_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_145326131.1|1790751_1792236_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032727.1|1792214_1794404_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000666799.1|1794396_1795068_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|1795069_1795333_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|1795332_1796037_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010406.1|1796040_1797165_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|1797151_1797634_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 8
NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	2752396	1986781	2004282	2752396	terminase,coat,integrase	Staphylococcus_phage(73.68%)	22	1987690:1987707	2001606:2001623
WP_001043552.1|1986781_1987582_-	staphylococcal enterotoxin type C2	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.4	3.1e-50
1987690:1987707	attL	ATTTAATGATTTCACGTT	NA	NA	NA	NA
WP_001035612.1|1988365_1988920_+	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	67.2	4.2e-59
WP_000801979.1|1989116_1990085_-	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_001293071.1|1990361_1990931_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
WP_072326620.1|1990927_1991140_-	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	88.6	5.1e-29
WP_000777464.1|1991271_1991799_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	98.9	1.1e-88
WP_000856046.1|1992027_1992606_-	hypothetical protein	NA	A0A1W6JQG0	Staphylococcus_phage	95.8	7.8e-80
WP_001288441.1|1992640_1992985_-	hypothetical protein	NA	A0A1W6JQF3	Staphylococcus_phage	100.0	1.4e-57
WP_001019807.1|1993694_1994336_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.0	5.5e-111
WP_000998185.1|1994332_1994617_-	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	98.9	7.7e-49
WP_001039170.1|1994618_1994981_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	98.3	3.4e-65
WP_000390453.1|1995281_1996739_-	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	95.9	6.6e-277
WP_145326168.1|1996755_1997625_-	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	95.5	4.3e-159
WP_001103939.1|1997688_1998006_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	57.0	3.2e-19
WP_145326170.1|1998056_1998218_-	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	96.2	4.3e-20
WP_000784885.1|1998210_1998357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000163544.1|1998368_1998587_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001045296.1|1998622_1998826_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_000358990.1|1998961_1999765_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JC02	uncultured_Caudovirales_phage	55.9	5.3e-10
WP_000149511.1|1999754_2000861_+|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.4	1.1e-77
WP_001085185.1|2001423_2001888_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
2001606:2001623	attR	ATTTAATGATTTCACGTT	NA	NA	NA	NA
WP_001050052.1|2001909_2004282_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.1	6.6e-93
>prophage 9
NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	2752396	2054913	2069311	2752396		uncultured_Caudovirales_phage(50.0%)	16	NA	NA
WP_000616839.1|2054913_2055675_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
WP_001245577.1|2055671_2056628_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|2056614_2057586_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|2057624_2057780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|2057960_2058932_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|2059049_2061155_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|2061117_2061516_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001790091.1|2061665_2061932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068497.1|2062316_2063183_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|2063202_2063703_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001837858.1|2063732_2063978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|2064043_2065549_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031797439.1|2065626_2065728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|2065817_2066735_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_145326178.1|2067359_2067902_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_145326180.1|2068252_2069311_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
>prophage 10
NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	2752396	2081282	2089101	2752396		Pandoravirus(16.67%)	10	NA	NA
WP_001217797.1|2081282_2082434_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604514.1|2082417_2083011_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|2083361_2084030_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|2084031_2084451_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|2084454_2085168_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|2085266_2085851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093562.1|2086130_2086571_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|2086911_2087385_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|2087359_2088046_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244417.1|2088045_2089101_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.5	1.6e-14
