assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007826355.1_ASM782635v1	NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	1	295013-295146	1	PILER-CR	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|68aa|up_9|NZ_CP041037.1_283218_283422_+,NA|101aa|up_1|NZ_CP041037.1_292081_292384_+,NA|34aa|up_0|NZ_CP041037.1_292432_292534_+,NA|103aa|down_3|NZ_CP041037.1_306827_307136_-,NA|89aa|down_4|NZ_CP041037.1_307275_307542_-	NA|68aa|up_9|NZ_CP041037.1_283218_283422_+	NA	NA|608aa|up_8|NZ_CP041037.1_283933_285757_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP041037.1_285895_286312_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP041037.1_286542_287235_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP041037.1_287399_288164_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP041037.1_288317_288998_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP041037.1_289021_290575_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP041037.1_290691_292050_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|101aa|up_1|NZ_CP041037.1_292081_292384_+	NA	NA|34aa|up_0|NZ_CP041037.1_292432_292534_+	NA	NA|936aa|down_0|NZ_CP041037.1_296305_299113_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_1|NZ_CP041037.1_299292_300159_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|117aa|down_2|NZ_CP041037.1_301503_301854_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|103aa|down_3|NZ_CP041037.1_306827_307136_-	NA	NA|89aa|down_4|NZ_CP041037.1_307275_307542_-	NA	NA|603aa|down_5|NZ_CP041037.1_307825_309634_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_6|NZ_CP041037.1_309765_310158_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_7|NZ_CP041037.1_310159_313021_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|253aa|down_8|NZ_CP041037.1_313326_314085_+	pfam04507, DUF576, Csa1 family	NA|265aa|down_9|NZ_CP041037.1_314196_314991_+	pfam04507, DUF576, Csa1 family
GCF_007826355.1_ASM782635v1	NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	2	372264-372342	1	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|220aa|up_3|NZ_CP041037.1_369192_369852_-,NA|36aa|up_0|NZ_CP041037.1_371836_371944_+,NA	NA|693aa|up_9|NZ_CP041037.1_361654_363733_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP041037.1_363870_365280_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP041037.1_365565_366372_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP041037.1_366434_367091_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP041037.1_367203_367677_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP041037.1_367799_369011_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP041037.1_369192_369852_-	NA	NA|381aa|up_2|NZ_CP041037.1_369911_371054_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP041037.1_371311_371698_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP041037.1_371836_371944_+	NA	NA|588aa|down_0|NZ_CP041037.1_372647_374411_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP041037.1_374435_376169_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP041037.1_376619_377306_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP041037.1_377283_378642_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP041037.1_378643_379651_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP041037.1_379628_380744_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP041037.1_380754_381447_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP041037.1_381457_381925_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP041037.1_381976_382954_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP041037.1_382955_383903_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_007826355.1_ASM782635v1	NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	3	536087-536237	2	PILER-CR	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAGAATTTCAAAA	38	2	26	536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536129-536145|536188-536216|536188-536216|536188-536216|536188-536216|536188-536216|536188-536216|536188-536216	NZ_CP041037.1_1006005-1005989|NZ_CP041037.1_1656391-1656375|NZ_CP041037.1_536237-536253|NZ_CP041037.1_1447147-1447131|NZ_CP041037.1_1660356-1660340|NZ_CP041037.1_2469986-2469970|NZ_CP041037.1_2666597-2666581|NZ_CP041037.1_547045-547061|NZ_CP041037.1_863032-863048|NZ_CP041037.1_1148491-1148507|NZ_CP041037.1_1180955-1180971|NZ_CP041037.1_1359432-1359448|NZ_CP041037.1_1798987-1799003|NZ_CP041037.1_1799103-1799119|NZ_CP041037.1_1799219-1799235|NZ_CP041037.1_1895238-1895254|NZ_CP041037.1_2021011-2021027|NZ_CP041037.1_2021069-2021085|NZ_CP041037.1_2026503-2026519|NZ_CP041037.1_546975-547003|NZ_CP041037.1_1359479-1359507|NZ_CP041037.1_1447100-1447072|NZ_CP041037.1_1572613-1572585|NZ_CP041037.1_1799034-1799062|NZ_CP041037.1_1799150-1799178|NZ_CP041037.1_2562556-2562584	NA	2	2	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|62aa|down_0|NZ_CP041037.1_536266_536452_-,NA|106aa|down_7|NZ_CP041037.1_544968_545286_-,NA|55aa|down_8|NZ_CP041037.1_545530_545695_-	NA|202aa|up_9|NZ_CP041037.1_528979_529585_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP041037.1_529754_530759_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP041037.1_530789_531296_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP041037.1_531297_531792_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP041037.1_531854_533114_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP041037.1_533110_533596_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP041037.1_533609_534056_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP041037.1_534061_534295_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP041037.1_534301_534901_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP041037.1_534920_535943_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP041037.1_536266_536452_-	NA	NA|117aa|down_1|NZ_CP041037.1_536577_536928_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP041037.1_537029_538241_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP041037.1_538233_538674_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP041037.1_538835_539600_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|422aa|down_5|NZ_CP041037.1_540232_541498_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_6|NZ_CP041037.1_541614_544782_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_7|NZ_CP041037.1_544968_545286_-	NA	NA|55aa|down_8|NZ_CP041037.1_545530_545695_-	NA	NA|303aa|down_9|NZ_CP041037.1_545827_546736_+	COG0679, COG0679, Predicted permeases [General function prediction only]
GCF_007826355.1_ASM782635v1	NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	4	647310-647400	2	CRISPRCasFinder	no	csa3	WYL,csa3,DEDDh,cas3,DinG	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|72aa|up_7|NZ_CP041037.1_640965_641181_-,NA|31aa|up_3|NZ_CP041037.1_645504_645597_-,NA|53aa|up_2|NZ_CP041037.1_646032_646191_-,NA|61aa|up_1|NZ_CP041037.1_646255_646438_+,NA|35aa|up_0|NZ_CP041037.1_646870_646975_+,NA|364aa|down_0|NZ_CP041037.1_647416_648508_-,NA|77aa|down_5|NZ_CP041037.1_652297_652528_+	NA|711aa|up_9|NZ_CP041037.1_637244_639377_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_8|NZ_CP041037.1_639411_640950_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|72aa|up_7|NZ_CP041037.1_640965_641181_-	NA	NA|602aa|up_6|NZ_CP041037.1_641630_643436_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_5|NZ_CP041037.1_643667_644450_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_4|NZ_CP041037.1_644517_645375_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_3|NZ_CP041037.1_645504_645597_-	NA	NA|53aa|up_2|NZ_CP041037.1_646032_646191_-	NA	NA|61aa|up_1|NZ_CP041037.1_646255_646438_+	NA	NA|35aa|up_0|NZ_CP041037.1_646870_646975_+	NA	NA|364aa|down_0|NZ_CP041037.1_647416_648508_-	NA	NA|327aa|down_1|NZ_CP041037.1_648773_649754_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP041037.1_649755_650076_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP041037.1_650227_650893_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP041037.1_651328_652267_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP041037.1_652297_652528_+	NA	NA|458aa|down_6|NZ_CP041037.1_653199_654573_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP041037.1_655029_655443_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP041037.1_655642_656086_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP041037.1_656206_656917_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_007826355.1_ASM782635v1	NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	5	1180869-1180956	3	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGGGGCCCCAACACAGAAGCTGACGAAAAG	30	1	12	1180899-1180926|1180899-1180926|1180899-1180926|1180899-1180926|1180899-1180926|1180899-1180926|1180899-1180926|1180899-1180926|1180899-1180926|1180899-1180926|1180899-1180926|1180899-1180926	NZ_CP041037.1_546988-547015|NZ_CP041037.1_853626-853653|NZ_CP041037.1_1359492-1359519|NZ_CP041037.1_1799047-1799074|NZ_CP041037.1_1799163-1799190|NZ_CP041037.1_1963627-1963654|NZ_CP041037.1_2562569-2562596|NZ_CP041037.1_1447087-1447060|NZ_CP041037.1_1656278-1656251|NZ_CP041037.1_2666482-2666455|NZ_CP041037.1_1005833-1005806|NZ_CP041037.1_1914815-1914788	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|97aa|up_9|NZ_CP041037.1_1171266_1171557_+	COG1534, COG1534, Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]	NA|190aa|up_8|NZ_CP041037.1_1171559_1172129_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_7|NZ_CP041037.1_1172118_1172703_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_6|NZ_CP041037.1_1172703_1173057_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_5|NZ_CP041037.1_1173059_1173776_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_4|NZ_CP041037.1_1173815_1174502_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_3|NZ_CP041037.1_1174593_1175055_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|325aa|up_2|NZ_CP041037.1_1177291_1178266_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP041037.1_1178310_1178562_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP041037.1_1178907_1180731_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP041037.1_1181293_1182418_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP041037.1_1182517_1183495_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP041037.1_1183526_1184153_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP041037.1_1184221_1186054_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP041037.1_1186189_1187329_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP041037.1_1187332_1188271_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP041037.1_1188272_1189025_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP041037.1_1189031_1190378_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP041037.1_1190670_1190847_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP041037.1_1191090_1191774_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_007826355.1_ASM782635v1	NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	6	1583291-1583380	4	CRISPRCasFinder	no	cas3	WYL,csa3,DEDDh,cas3,DinG	Unclear	TGAGCTTTAGCTCAGGCGTTCCTCTA	26	1	1	1583317-1583354	NZ_CP041037.1_1583544-1583581	NA	1	1	Unclear	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|117aa|up_9|NZ_CP041037.1_1572913_1573264_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|up_8|NZ_CP041037.1_1573366_1574104_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|up_7|NZ_CP041037.1_1574103_1574607_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|up_6|NZ_CP041037.1_1574794_1575070_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|up_5|NZ_CP041037.1_1575411_1576779_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|up_4|NZ_CP041037.1_1576804_1577137_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|417aa|up_3|NZ_CP041037.1_1577123_1578374_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1189aa|up_2|NZ_CP041037.1_1578373_1581940_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|244aa|up_1|NZ_CP041037.1_1582086_1582818_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|up_0|NZ_CP041037.1_1582933_1583167_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|245aa|down_0|NZ_CP041037.1_1583601_1584336_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|309aa|down_1|NZ_CP041037.1_1584328_1585255_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|329aa|down_2|NZ_CP041037.1_1585247_1586234_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|191aa|down_3|NZ_CP041037.1_1586238_1586811_-	PRK04424, PRK04424, transcription factor FapR	cas3|687aa|down_4|NZ_CP041037.1_1587013_1589074_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|549aa|down_5|NZ_CP041037.1_1589263_1590910_-	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	NA|125aa|down_6|NZ_CP041037.1_1590924_1591299_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_7|NZ_CP041037.1_1591741_1591930_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|214aa|down_8|NZ_CP041037.1_1592310_1592952_-	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|215aa|down_9|NZ_CP041037.1_1592958_1593603_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
GCF_007826355.1_ASM782635v1	NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	7	1656309-1656389	5	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CCAACTTGCATTGTCTGTAGAAATT	25	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|76aa|up_6|NZ_CP041037.1_1649050_1649278_-,NA|75aa|down_0|NZ_CP041037.1_1656576_1656801_-,NA|49aa|down_1|NZ_CP041037.1_1656757_1656904_-,NA|78aa|down_3|NZ_CP041037.1_1659012_1659246_+,NA|83aa|down_4|NZ_CP041037.1_1659409_1659658_+,NA|62aa|down_5|NZ_CP041037.1_1659864_1660050_+,NA|169aa|down_8|NZ_CP041037.1_1661959_1662466_-	NA|45aa|up_9|NZ_CP041037.1_1646315_1646450_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_8|NZ_CP041037.1_1647361_1647550_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_7|NZ_CP041037.1_1647798_1648746_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_6|NZ_CP041037.1_1649050_1649278_-	NA	NA|502aa|up_5|NZ_CP041037.1_1649585_1651091_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_4|NZ_CP041037.1_1651313_1652246_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_3|NZ_CP041037.1_1652268_1653270_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_2|NZ_CP041037.1_1653707_1654433_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_1|NZ_CP041037.1_1654527_1655253_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_0|NZ_CP041037.1_1655360_1656077_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|down_0|NZ_CP041037.1_1656576_1656801_-	NA	NA|49aa|down_1|NZ_CP041037.1_1656757_1656904_-	NA	NA|320aa|down_2|NZ_CP041037.1_1657576_1658536_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|down_3|NZ_CP041037.1_1659012_1659246_+	NA	NA|83aa|down_4|NZ_CP041037.1_1659409_1659658_+	NA	NA|62aa|down_5|NZ_CP041037.1_1659864_1660050_+	NA	NA|117aa|down_6|NZ_CP041037.1_1660702_1661053_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_7|NZ_CP041037.1_1661203_1661701_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_8|NZ_CP041037.1_1661959_1662466_-	NA	NA|133aa|down_9|NZ_CP041037.1_1663136_1663535_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed
GCF_007826355.1_ASM782635v1	NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	8	1914803-1914881	6	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TATTGTAAGCTGACTTTCCGCCA	23	1	2	1914826-1914858|1914826-1914858	NZ_CP041037.1_1005844-1005876|NZ_CP041037.1_1572555-1572587	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|301aa|up_9|NZ_CP041037.1_1898769_1899672_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP041037.1_1899837_1903491_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP041037.1_1903491_1906968_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP041037.1_1907127_1907703_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP041037.1_1907718_1908243_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP041037.1_1908247_1908823_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP041037.1_1909147_1910479_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP041037.1_1910829_1912035_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP041037.1_1912024_1913404_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP041037.1_1913645_1914575_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP041037.1_1915027_1916272_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP041037.1_1916380_1917571_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP041037.1_1917878_1919006_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP041037.1_1919367_1919745_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP041037.1_1920160_1920754_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP041037.1_1920817_1921201_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP041037.1_1921331_1923737_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP041037.1_1923729_1924158_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP041037.1_1924169_1924499_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP041037.1_1924491_1925988_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_007826355.1_ASM782635v1	NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	9	2430024-2430126	7	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|160aa|up_9|NZ_CP041037.1_2419096_2419576_+,NA|131aa|up_8|NZ_CP041037.1_2419597_2419990_+,NA|221aa|up_1|NZ_CP041037.1_2428270_2428933_+,NA|86aa|down_0|NZ_CP041037.1_2430333_2430591_+,NA|34aa|down_1|NZ_CP041037.1_2430797_2430899_-,NA|93aa|down_6|NZ_CP041037.1_2437262_2437541_+,NA|128aa|down_8|NZ_CP041037.1_2438495_2438879_+	NA|160aa|up_9|NZ_CP041037.1_2419096_2419576_+	NA	NA|131aa|up_8|NZ_CP041037.1_2419597_2419990_+	NA	NA|369aa|up_7|NZ_CP041037.1_2420615_2421722_-	pfam07751, Abi_2, Abi-like protein	NA|514aa|up_6|NZ_CP041037.1_2422291_2423833_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP041037.1_2423857_2425324_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP041037.1_2425361_2426630_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP041037.1_2426629_2427208_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP041037.1_2427720_2428128_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP041037.1_2428270_2428933_+	NA	NA|319aa|up_0|NZ_CP041037.1_2429050_2430007_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|86aa|down_0|NZ_CP041037.1_2430333_2430591_+	NA	NA|34aa|down_1|NZ_CP041037.1_2430797_2430899_-	NA	NA|463aa|down_2|NZ_CP041037.1_2430983_2432372_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_3|NZ_CP041037.1_2432451_2433207_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_4|NZ_CP041037.1_2433698_2434268_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_5|NZ_CP041037.1_2434283_2435807_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|93aa|down_6|NZ_CP041037.1_2437262_2437541_+	NA	NA|209aa|down_7|NZ_CP041037.1_2437613_2438240_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_8|NZ_CP041037.1_2438495_2438879_+	NA	NA|194aa|down_9|NZ_CP041037.1_2438944_2439526_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCF_007826355.1_ASM782635v1	NZ_CP041037	Staphylococcus aureus strain NP66 chromosome, complete genome	10	2547319-2547452	8	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	2	13	2547342-2547374|2547342-2547374|2547398-2547429|2547398-2547429|2547398-2547429|2547398-2547429|2547398-2547429|2547398-2547429|2547398-2547429|2547398-2547429|2547398-2547429|2547398-2547429|2547398-2547429	NZ_CP041037.1_1656263-1656295|NZ_CP041037.1_2666467-2666499|NZ_CP041037.1_2547287-2547318|NZ_CP041037.1_547061-547030|NZ_CP041037.1_863048-863017|NZ_CP041037.1_1359448-1359417|NZ_CP041037.1_1447131-1447162|NZ_CP041037.1_1799003-1798972|NZ_CP041037.1_1799119-1799088|NZ_CP041037.1_1799235-1799204|NZ_CP041037.1_2021027-2020996|NZ_CP041037.1_2026519-2026488|NZ_CP041037.1_2666581-2666612	NA	2	2	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|131aa|up_6|NZ_CP041037.1_2541743_2542136_-,NA|45aa|up_1|NZ_CP041037.1_2546086_2546221_-,NA	NA|317aa|up_9|NZ_CP041037.1_2537193_2538144_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|331aa|up_8|NZ_CP041037.1_2538469_2539462_-	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|459aa|up_7|NZ_CP041037.1_2539695_2541072_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|131aa|up_6|NZ_CP041037.1_2541743_2542136_-	NA	NA|333aa|up_5|NZ_CP041037.1_2542516_2543515_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|294aa|up_4|NZ_CP041037.1_2543746_2544628_+	pfam06800, Sugar_transport, Sugar transport protein	NA|135aa|up_3|NZ_CP041037.1_2544642_2545047_+	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|305aa|up_2|NZ_CP041037.1_2545074_2545989_+	TIGR02152, Putative_ribokinase, ribokinase	NA|45aa|up_1|NZ_CP041037.1_2546086_2546221_-	NA	NA|254aa|up_0|NZ_CP041037.1_2546239_2547001_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|479aa|down_0|NZ_CP041037.1_2547516_2548953_-	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|264aa|down_1|NZ_CP041037.1_2548968_2549760_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|235aa|down_2|NZ_CP041037.1_2549908_2550613_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|234aa|down_3|NZ_CP041037.1_2550720_2551422_-	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|148aa|down_4|NZ_CP041037.1_2551414_2551858_-	PRK04125, PRK04125, antiholin-like protein LrgA	NA|247aa|down_5|NZ_CP041037.1_2551970_2552711_-	PRK14084, PRK14084, DNA-binding response regulator	NA|580aa|down_6|NZ_CP041037.1_2552713_2554453_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|225aa|down_7|NZ_CP041037.1_2554712_2555387_-	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|574aa|down_8|NZ_CP041037.1_2555530_2557252_-	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|563aa|down_9|NZ_CP041037.1_2557284_2558973_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase
