assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007833875.1_ASM783387v1	NZ_CP040456	Escherichia coli strain UPEC132 chromosome, complete genome	1	1092766-1092854	1	CRISPRCasFinder	no		WYL,cas3,PD-DExK,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	ATTTTTATCTAAAGGGCTTTAGACATTTTT	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,PD-DExK,c2c9_V-U4,csa3,DEDDh,DinG,cas14j,RT	NA|108aa|up_2|NZ_CP040456.1_1090216_1090540_+,NA|84aa|up_1|NZ_CP040456.1_1090549_1090801_+,NA|77aa|down_0|NZ_CP040456.1_1093221_1093452_+,NA|62aa|down_2|NZ_CP040456.1_1095298_1095484_+,NA|86aa|down_3|NZ_CP040456.1_1095480_1095738_+,NA|69aa|down_4|NZ_CP040456.1_1095734_1095941_+,NA|127aa|down_5|NZ_CP040456.1_1096069_1096450_+,NA|68aa|down_6|NZ_CP040456.1_1096497_1096701_+,NA|103aa|down_7|NZ_CP040456.1_1096697_1097006_+,NA|71aa|down_8|NZ_CP040456.1_1097002_1097215_+,NA|72aa|down_9|NZ_CP040456.1_1098103_1098319_+	NA|399aa|up_9|NZ_CP040456.1_1079984_1081181_-	TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase	NA|396aa|up_8|NZ_CP040456.1_1081238_1082426_-	PRK07200, PRK07200, aspartate/ornithine carbamoyltransferase family protein; Validated	NA|593aa|up_7|NZ_CP040456.1_1082904_1084683_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|160aa|up_6|NZ_CP040456.1_1084722_1085202_-	PRK09908, PRK09908, xanthine dehydrogenase iron sulfur-binding subunit XdhC	NA|293aa|up_5|NZ_CP040456.1_1085198_1086077_-	PRK09971, PRK09971, xanthine dehydrogenase subunit XdhB; Provisional	NA|766aa|up_4|NZ_CP040456.1_1086087_1088385_-	PRK09970, PRK09970, xanthine dehydrogenase subunit XdhA; Provisional	NA|252aa|up_3|NZ_CP040456.1_1088798_1089554_+	PRK10871, nlpD, murein hydrolase activator NlpD	NA|108aa|up_2|NZ_CP040456.1_1090216_1090540_+	NA	NA|84aa|up_1|NZ_CP040456.1_1090549_1090801_+	NA	NA|193aa|up_0|NZ_CP040456.1_1090963_1091542_-	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|77aa|down_0|NZ_CP040456.1_1093221_1093452_+	NA	NA|498aa|down_1|NZ_CP040456.1_1093602_1095096_+	cd00046, SF2-N, N-terminal DEAD/H-box helicase domain of superfamily 2 helicases	NA|62aa|down_2|NZ_CP040456.1_1095298_1095484_+	NA	NA|86aa|down_3|NZ_CP040456.1_1095480_1095738_+	NA	NA|69aa|down_4|NZ_CP040456.1_1095734_1095941_+	NA	NA|127aa|down_5|NZ_CP040456.1_1096069_1096450_+	NA	NA|68aa|down_6|NZ_CP040456.1_1096497_1096701_+	NA	NA|103aa|down_7|NZ_CP040456.1_1096697_1097006_+	NA	NA|71aa|down_8|NZ_CP040456.1_1097002_1097215_+	NA	NA|72aa|down_9|NZ_CP040456.1_1098103_1098319_+	NA
GCF_007833875.1_ASM783387v1	NZ_CP040456	Escherichia coli strain UPEC132 chromosome, complete genome	2	1730994-1731107	2	CRISPRCasFinder	no		WYL,cas3,PD-DExK,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	33	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,PD-DExK,c2c9_V-U4,csa3,DEDDh,DinG,cas14j,RT	NA,NA	NA|74aa|up_9|NZ_CP040456.1_1720563_1720785_-	PRK09956, PRK09956, ISNCY family transposase	NA|304aa|up_8|NZ_CP040456.1_1720797_1721709_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP040456.1_1721901_1723092_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP040456.1_1723088_1724348_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP040456.1_1724337_1725966_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP040456.1_1726238_1727597_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP040456.1_1727601_1728678_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP040456.1_1728880_1729531_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP040456.1_1729584_1729839_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP040456.1_1729838_1730969_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP040456.1_1731158_1733444_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|241aa|down_1|NZ_CP040456.1_1738023_1738746_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_2|NZ_CP040456.1_1738892_1741520_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_3|NZ_CP040456.1_1741668_1743357_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_4|NZ_CP040456.1_1744119_1748514_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_5|NZ_CP040456.1_1748514_1750164_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_6|NZ_CP040456.1_1750168_1750945_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_7|NZ_CP040456.1_1751018_1752203_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_8|NZ_CP040456.1_1752233_1753556_-	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|217aa|down_9|NZ_CP040456.1_1753552_1754203_-	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit
GCF_007833875.1_ASM783387v1	NZ_CP040456	Escherichia coli strain UPEC132 chromosome, complete genome	3	2463590-2463713	3	CRISPRCasFinder	no	DEDDh	WYL,cas3,PD-DExK,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,PD-DExK,c2c9_V-U4,csa3,DEDDh,DinG,cas14j,RT	NA,NA|30aa|down_7|NZ_CP040456.1_2472609_2472699_+	NA|471aa|up_9|NZ_CP040456.1_2453042_2454455_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP040456.1_2455011_2455221_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP040456.1_2455676_2456303_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP040456.1_2456323_2458426_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP040456.1_2458429_2459077_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP040456.1_2459140_2459809_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP040456.1_2459805_2460591_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP040456.1_2460594_2461407_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|537aa|up_1|NZ_CP040456.1_2461412_2463023_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP040456.1_2463148_2463454_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP040456.1_2464027_2465284_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP040456.1_2465324_2466698_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP040456.1_2466912_2467554_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP040456.1_2467593_2468742_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP040456.1_2469032_2470244_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP040456.1_2470356_2471289_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP040456.1_2471285_2472311_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP040456.1_2472609_2472699_+	NA	NA|390aa|down_8|NZ_CP040456.1_2472863_2474033_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP040456.1_2474178_2474760_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_007833875.1_ASM783387v1	NZ_CP040456	Escherichia coli strain UPEC132 chromosome, complete genome	4	3180509-3180600	4	CRISPRCasFinder	no		WYL,cas3,PD-DExK,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,PD-DExK,c2c9_V-U4,csa3,DEDDh,DinG,cas14j,RT	NA|70aa|up_9|NZ_CP040456.1_3169759_3169969_-,NA	NA|70aa|up_9|NZ_CP040456.1_3169759_3169969_-	NA	NA|1321aa|up_8|NZ_CP040456.1_3170023_3173986_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP040456.1_3174025_3174664_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP040456.1_3174951_3176043_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP040456.1_3176042_3176735_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP040456.1_3176746_3177133_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP040456.1_3177140_3177941_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP040456.1_3177950_3178541_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP040456.1_3178551_3179046_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP040456.1_3179066_3180395_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP040456.1_3181023_3181620_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP040456.1_3181640_3181868_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP040456.1_3181905_3183147_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP040456.1_3183681_3184602_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP040456.1_3184601_3184907_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP040456.1_3185161_3185761_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP040456.1_3185757_3188304_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP040456.1_3188303_3189476_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP040456.1_3189605_3190298_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP040456.1_3190270_3191299_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_007833875.1_ASM783387v1	NZ_CP040456	Escherichia coli strain UPEC132 chromosome, complete genome	5	3885292-3885427	5	CRISPRCasFinder	no		WYL,cas3,PD-DExK,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	GCGCCACTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC	43	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,PD-DExK,c2c9_V-U4,csa3,DEDDh,DinG,cas14j,RT	NA|82aa|up_3|NZ_CP040456.1_3880568_3880814_-,NA	NA|484aa|up_9|NZ_CP040456.1_3873825_3875277_-	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|390aa|up_8|NZ_CP040456.1_3875310_3876480_-	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|297aa|up_7|NZ_CP040456.1_3876639_3877530_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|529aa|up_6|NZ_CP040456.1_3877768_3879355_+	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional	NA|92aa|up_5|NZ_CP040456.1_3879455_3879731_-	PRK09929, PRK09929, hypothetical protein; Provisional	NA|225aa|up_4|NZ_CP040456.1_3879877_3880552_+	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|82aa|up_3|NZ_CP040456.1_3880568_3880814_-	NA	NA|350aa|up_2|NZ_CP040456.1_3881435_3882485_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|461aa|up_1|NZ_CP040456.1_3882861_3884244_-	PRK06846, PRK06846, putative deaminase; Validated	NA|317aa|up_0|NZ_CP040456.1_3884253_3885204_-	PRK12352, PRK12352, putative carbamate kinase; Reviewed	NA|473aa|down_0|NZ_CP040456.1_3885450_3886869_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|516aa|down_1|NZ_CP040456.1_3886868_3888416_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|288aa|down_2|NZ_CP040456.1_3888405_3889269_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|202aa|down_3|NZ_CP040456.1_3889308_3889914_-	sd00045, ANK, ankyrin repeats	NA|166aa|down_4|NZ_CP040456.1_3890171_3890669_+	pfam06496, DUF1097, Protein of unknown function (DUF1097)	NA|311aa|down_5|NZ_CP040456.1_3890760_3891693_+	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|363aa|down_6|NZ_CP040456.1_3891734_3892823_-	smart00052, EAL, Putative diguanylate phosphodiesterase	NA|678aa|down_7|NZ_CP040456.1_3893700_3895734_-	PRK09928, PRK09928, choline transport protein BetT; Provisional	NA|196aa|down_8|NZ_CP040456.1_3895862_3896450_+	PRK00767, PRK00767, transcriptional regulator BetI; Validated	NA|491aa|down_9|NZ_CP040456.1_3896463_3897936_+	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional
GCF_007833875.1_ASM783387v1	NZ_CP040456	Escherichia coli strain UPEC132 chromosome, complete genome	6	4214306-4214438	1	PILER-CR	no		WYL,cas3,PD-DExK,c2c9_V-U4,csa3,DEDDh,DinG,cas14j	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,PD-DExK,c2c9_V-U4,csa3,DEDDh,DinG,cas14j,RT	NA,NA	NA|105aa|up_9|NZ_CP040456.1_4205677_4205992_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP040456.1_4205994_4206228_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP040456.1_4206313_4206793_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP040456.1_4206984_4208847_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP040456.1_4208839_4209370_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP040456.1_4209477_4210809_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP040456.1_4210867_4211155_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP040456.1_4211151_4212438_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP040456.1_4212488_4213430_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP040456.1_4213444_4214215_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP040456.1_4214687_4216202_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP040456.1_4216232_4217375_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP040456.1_4217502_4218720_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP040456.1_4218792_4220346_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP040456.1_4220454_4221240_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP040456.1_4221245_4221836_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP040456.1_4221954_4222350_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP040456.1_4222610_4225832_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP040456.1_4225849_4226998_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP040456.1_4227453_4228275_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
