assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007843535.1_ASM784353v1	NZ_CP024946	Helicobacter pylori strain B147 chromosome, complete genome	1	558404-558509	1	CRISPRCasFinder	no		DEDDh,cas3,cas2	Orphan	AAAAATAAGGATTTTAAAGCTTTCA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas2	NA|98aa|up_9|NZ_CP024946.1_550257_550551_-,NA|241aa|up_2|NZ_CP024946.1_555328_556051_+,NA	NA|98aa|up_9|NZ_CP024946.1_550257_550551_-	NA	NA|179aa|up_8|NZ_CP024946.1_550493_551030_-	pfam02527, GidB, rRNA small subunit methyltransferase G	NA|346aa|up_7|NZ_CP024946.1_551026_552064_-	TIGR00113, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase	NA|249aa|up_6|NZ_CP024946.1_552067_552814_-	COG0805, TatC, Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]	NA|161aa|up_5|NZ_CP024946.1_552806_553289_-	PRK04098, PRK04098, Sec-independent protein translocase subunit TatB	NA|337aa|up_4|NZ_CP024946.1_553356_554367_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|271aa|up_3|NZ_CP024946.1_554367_555180_-	TIGR00222, 3-methyl-2-oxobutanoate_hydroxymethyltransferase, 3-methyl-2-oxobutanoate hydroxymethyltransferase	NA|241aa|up_2|NZ_CP024946.1_555328_556051_+	NA	NA|286aa|up_1|NZ_CP024946.1_556040_556898_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|314aa|up_0|NZ_CP024946.1_556909_557851_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|218aa|down_0|NZ_CP024946.1_559119_559773_+	PRK00556, minC, septum formation inhibitor; Reviewed	NA|296aa|down_1|NZ_CP024946.1_559769_560657_+	TIGR00325, UDP-3-O-_N-acetylglucosamine_deacetylase, UDP-3-0-acyl N-acetylglucosamine deacetylase	NA|141aa|down_2|NZ_CP024946.1_560729_561152_+	COG1214, COG1214, Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|294aa|down_3|NZ_CP024946.1_561205_562087_+	TIGR00191, Homoserine_kinase, homoserine kinase	NA|90aa|down_4|NZ_CP024946.1_562058_562328_+	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription]	NA|948aa|down_5|NZ_CP024946.1_562324_565168_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|112aa|down_6|NZ_CP024946.1_565167_565503_+	TIGR00082, Ribosome-binding_factor_A, ribosome-binding factor A	NA|147aa|down_7|NZ_CP024946.1_565495_565936_+	COG0779, COG0779, Uncharacterized protein conserved in bacteria [Function unknown]	NA|663aa|down_8|NZ_CP024946.1_566044_568033_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|371aa|down_9|NZ_CP024946.1_568230_569343_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain
GCF_007843535.1_ASM784353v1	NZ_CP024946	Helicobacter pylori strain B147 chromosome, complete genome	2	809661-809803	2	CRISPRCasFinder	no		DEDDh,cas3,cas2	Orphan	TTTAATGGCGGATCGTTTAATTT	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,cas2	NA|206aa|up_5|NZ_CP024946.1_799826_800444_+,NA|167aa|down_0|NZ_CP024946.1_817137_817638_-,NA|112aa|down_2|NZ_CP024946.1_818771_819107_-	NA|434aa|up_9|NZ_CP024946.1_794210_795512_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|299aa|up_8|NZ_CP024946.1_796463_797360_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|511aa|up_7|NZ_CP024946.1_797523_799056_+	PRK12584, PRK12584, flagellin A; Reviewed	NA|219aa|up_6|NZ_CP024946.1_799173_799830_+	PRK13913, PRK13913, 3-methyladenine DNA glycosylase; Provisional	NA|206aa|up_5|NZ_CP024946.1_799826_800444_+	NA	NA|341aa|up_4|NZ_CP024946.1_800510_801533_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|478aa|up_3|NZ_CP024946.1_801542_802976_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|235aa|up_2|NZ_CP024946.1_802986_803691_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1029aa|up_1|NZ_CP024946.1_803703_806790_+	pfam00873, ACR_tran, AcrB/AcrD/AcrF family	NA|190aa|up_0|NZ_CP024946.1_806786_807356_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|167aa|down_0|NZ_CP024946.1_817137_817638_-	NA	NA|223aa|down_1|NZ_CP024946.1_817893_818562_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|112aa|down_2|NZ_CP024946.1_818771_819107_-	NA	NA|657aa|down_3|NZ_CP024946.1_819210_821181_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|314aa|down_4|NZ_CP024946.1_821257_822199_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|578aa|down_5|NZ_CP024946.1_822233_823967_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|192aa|down_6|NZ_CP024946.1_823983_824559_+	PRK00279, adk, adenylate kinase; Reviewed	NA|333aa|down_7|NZ_CP024946.1_824584_825583_+	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]	NA|435aa|down_8|NZ_CP024946.1_825641_826946_+	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]	NA|174aa|down_9|NZ_CP024946.1_826998_827520_+	PRK01250, PRK01250, inorganic diphosphatase
GCF_007843535.1_ASM784353v1	NZ_CP024946	Helicobacter pylori strain B147 chromosome, complete genome	3	1096852-1096945	3	CRISPRCasFinder	no		DEDDh,cas3,cas2	Orphan	AATTTTCAGTAAGAAAGGCTTTTTAAGCTT	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas2	NA|72aa|up_9|NZ_CP024946.1_1082442_1082658_-,NA|292aa|up_8|NZ_CP024946.1_1082742_1083618_-,NA|615aa|up_2|NZ_CP024946.1_1092018_1093863_-,NA|126aa|down_4|NZ_CP024946.1_1104713_1105091_-,NA|43aa|down_9|NZ_CP024946.1_1110732_1110861_-	NA|72aa|up_9|NZ_CP024946.1_1082442_1082658_-	NA	NA|292aa|up_8|NZ_CP024946.1_1082742_1083618_-	NA	NA|506aa|up_7|NZ_CP024946.1_1083762_1085280_-	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase	NA|792aa|up_6|NZ_CP024946.1_1085607_1087983_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|158aa|up_5|NZ_CP024946.1_1087983_1088457_-	pfam02075, RuvC, Crossover junction endodeoxyribonuclease RuvC	NA|242aa|up_4|NZ_CP024946.1_1088588_1089314_+	COG1432, COG1432, Uncharacterized conserved protein [Function unknown]	NA|184aa|up_3|NZ_CP024946.1_1091441_1091993_-	TIGR00084, Holliday_junction_ATP-dependent_DNA_helicase_RuvA, Holliday junction DNA helicase, RuvA subunit	NA|615aa|up_2|NZ_CP024946.1_1092018_1093863_-	NA	NA|487aa|up_1|NZ_CP024946.1_1093955_1095416_+	pfam03023, MVIN, MviN-like protein	NA|466aa|up_0|NZ_CP024946.1_1095416_1096814_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|256aa|down_0|NZ_CP024946.1_1101145_1101913_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|327aa|down_1|NZ_CP024946.1_1101912_1102893_-	pfam01032, FecCD, FecCD transport family	NA|283aa|down_2|NZ_CP024946.1_1102885_1103734_-	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|87aa|down_3|NZ_CP024946.1_1104472_1104733_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|126aa|down_4|NZ_CP024946.1_1104713_1105091_-	NA	NA|729aa|down_5|NZ_CP024946.1_1105395_1107582_-	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|371aa|down_6|NZ_CP024946.1_1108537_1109650_-	TIGR00075, Hydrogenase_isoenzymes_formation_protein_HypD, hydrogenase expression/formation protein HypD	NA|79aa|down_7|NZ_CP024946.1_1109655_1109892_-	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|243aa|down_8|NZ_CP024946.1_1109891_1110620_-	TIGR00073, nickel_incorporation_protein_HypB, hydrogenase accessory protein HypB	NA|43aa|down_9|NZ_CP024946.1_1110732_1110861_-	NA
GCF_007843535.1_ASM784353v1	NZ_CP024946	Helicobacter pylori strain B147 chromosome, complete genome	4	1137939-1138078	1,4	PILER-CR,CRISPRCasFinder	no		DEDDh,cas3,cas2	Orphan	TTTAATAACAACACCTTCAATCAAGGGACTTATAACTTTAATA,TTCAATCAAGGGACTTATAATTTTAAT	43,27	0	0	NA	NA	I-B:I-B	2,2	2	Orphan	DEDDh,cas3,cas2	NA,NA|220aa|down_8|NZ_CP024946.1_1150787_1151447_+	NA|380aa|up_9|NZ_CP024946.1_1119395_1120535_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|676aa|up_8|NZ_CP024946.1_1120538_1122566_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|518aa|up_7|NZ_CP024946.1_1123111_1124665_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|531aa|up_6|NZ_CP024946.1_1124686_1126279_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_5|NZ_CP024946.1_1126966_1128511_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|814aa|up_4|NZ_CP024946.1_1128756_1131198_-	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|144aa|up_3|NZ_CP024946.1_1131455_1131887_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NZ_CP024946.1_1131891_1135149_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NZ_CP024946.1_1135247_1135940_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|up_0|NZ_CP024946.1_1136081_1137080_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|368aa|down_0|NZ_CP024946.1_1144342_1145446_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NZ_CP024946.1_1145513_1145720_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NZ_CP024946.1_1145878_1146460_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NZ_CP024946.1_1146456_1147602_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|327aa|down_4|NZ_CP024946.1_1147540_1148521_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NZ_CP024946.1_1148521_1149064_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NZ_CP024946.1_1149079_1149991_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NZ_CP024946.1_1149987_1150791_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_8|NZ_CP024946.1_1150787_1151447_+	NA	NA|201aa|down_9|NZ_CP024946.1_1151450_1152053_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
