assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007844035.1_ASM784403v1	NZ_CP024949	Helicobacter pylori strain B136A chromosome, complete genome	1	269537-269634	1	CRISPRCasFinder	no	cas2	cas2,c2c9_V-U4,cas3,cas14j,DEDDh	Unclear	AAATTTTGGGCTAGAATGTGTAAAAAGGTAAAAT	34	0	0	NA	NA	NA	1	1	Unclear	cas2,c2c9_V-U4,cas3,cas14j,DEDDh	NA|131aa|up_8|NZ_CP024949.1_260551_260944_+,NA|97aa|up_6|NZ_CP024949.1_261376_261667_+,NA|615aa|down_2|NZ_CP024949.1_272594_274439_+,NA|207aa|down_4|NZ_CP024949.1_277856_278477_+	NA|723aa|up_9|NZ_CP024949.1_257987_260156_+	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|131aa|up_8|NZ_CP024949.1_260551_260944_+	NA	cas2|95aa|up_7|NZ_CP024949.1_260924_261209_+	COG3309, VapD, Uncharacterized virulence-associated protein D [Function unknown]	NA|97aa|up_6|NZ_CP024949.1_261376_261667_+	NA	NA|85aa|up_5|NZ_CP024949.1_261680_261935_+	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|175aa|up_4|NZ_CP024949.1_262055_262580_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|281aa|up_3|NZ_CP024949.1_262738_263581_+	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs	NA|327aa|up_2|NZ_CP024949.1_263573_264554_+	pfam01032, FecCD, FecCD transport family	NA|256aa|up_1|NZ_CP024949.1_264553_265321_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|1321aa|up_0|NZ_CP024949.1_265394_269357_-	pfam02691, VacA, Vacuolating cyotoxin	NA|466aa|down_0|NZ_CP024949.1_269643_271041_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|487aa|down_1|NZ_CP024949.1_271041_272502_-	pfam03023, MVIN, MviN-like protein	NA|615aa|down_2|NZ_CP024949.1_272594_274439_+	NA	NA|184aa|down_3|NZ_CP024949.1_274465_275017_+	TIGR00084, Holliday_junction_ATP-dependent_DNA_helicase_RuvA, Holliday junction DNA helicase, RuvA subunit	NA|207aa|down_4|NZ_CP024949.1_277856_278477_+	NA	NA|659aa|down_5|NZ_CP024949.1_278546_280523_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|278aa|down_6|NZ_CP024949.1_280527_281361_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|441aa|down_7|NZ_CP024949.1_281426_282749_-	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|315aa|down_8|NZ_CP024949.1_282856_283801_-	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|408aa|down_9|NZ_CP024949.1_283813_285037_-	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha
GCF_007844035.1_ASM784403v1	NZ_CP024949	Helicobacter pylori strain B136A chromosome, complete genome	2	289502-289587	2	CRISPRCasFinder	no		cas2,c2c9_V-U4,cas3,cas14j,DEDDh	Orphan	GTTCTTGAACCACTACTTCTCGCATG	26	0	0	NA	NA	NA	1	1	Orphan	cas2,c2c9_V-U4,cas3,cas14j,DEDDh	NA|207aa|up_9|NZ_CP024949.1_277856_278477_+,NA|436aa|up_0|NZ_CP024949.1_286962_288270_-,NA|512aa|down_8|NZ_CP024949.1_298399_299935_-	NA|207aa|up_9|NZ_CP024949.1_277856_278477_+	NA	NA|659aa|up_8|NZ_CP024949.1_278546_280523_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|278aa|up_7|NZ_CP024949.1_280527_281361_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|441aa|up_6|NZ_CP024949.1_281426_282749_-	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|315aa|up_5|NZ_CP024949.1_282856_283801_-	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|408aa|up_4|NZ_CP024949.1_283813_285037_-	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|131aa|up_3|NZ_CP024949.1_285046_285439_-	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|187aa|up_2|NZ_CP024949.1_285454_286015_-	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|221aa|up_1|NZ_CP024949.1_286293_286956_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|436aa|up_0|NZ_CP024949.1_286962_288270_-	NA	NA|349aa|down_0|NZ_CP024949.1_289763_290810_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|337aa|down_1|NZ_CP024949.1_290970_291981_-	TIGR00749, Glucokinase_Glucose_kinase	NA|228aa|down_2|NZ_CP024949.1_291967_292651_-	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|426aa|down_3|NZ_CP024949.1_292661_293939_-	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|609aa|down_4|NZ_CP024949.1_294004_295831_+	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|207aa|down_5|NZ_CP024949.1_295849_296470_+	TIGR01182, KHG/KDPG_aldolase_	NA|291aa|down_6|NZ_CP024949.1_296544_297417_+	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|251aa|down_7|NZ_CP024949.1_297629_298382_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|512aa|down_8|NZ_CP024949.1_298399_299935_-	NA	NA|345aa|down_9|NZ_CP024949.1_300668_301703_+	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE
GCF_007844035.1_ASM784403v1	NZ_CP024949	Helicobacter pylori strain B136A chromosome, complete genome	3	459716-459849	3	CRISPRCasFinder	no		cas2,c2c9_V-U4,cas3,cas14j,DEDDh	Orphan	TTAAAATTATAAGTGCCTTGATT	23	0	0	NA	NA	I-B	2	2	Orphan	cas2,c2c9_V-U4,cas3,cas14j,DEDDh	NA|220aa|up_8|NZ_CP024949.1_446371_447031_-,NA	NA|201aa|up_9|NZ_CP024949.1_445765_446368_-	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]	NA|220aa|up_8|NZ_CP024949.1_446371_447031_-	NA	NA|268aa|up_7|NZ_CP024949.1_447027_447831_-	COG0496, SurE, Predicted acid phosphatase [General function prediction only]	NA|304aa|up_6|NZ_CP024949.1_447827_448739_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|181aa|up_5|NZ_CP024949.1_448754_449297_-	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|327aa|up_4|NZ_CP024949.1_449297_450278_-	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|382aa|up_3|NZ_CP024949.1_450216_451362_-	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|194aa|up_2|NZ_CP024949.1_451358_451940_-	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|69aa|up_1|NZ_CP024949.1_452086_452293_+	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|367aa|up_0|NZ_CP024949.1_452360_453461_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|333aa|down_0|NZ_CP024949.1_460714_461713_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|231aa|down_1|NZ_CP024949.1_461856_462549_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|1086aa|down_2|NZ_CP024949.1_462646_465904_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|144aa|down_3|NZ_CP024949.1_465908_466340_+	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|814aa|down_4|NZ_CP024949.1_466523_468965_+	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|515aa|down_5|NZ_CP024949.1_469213_470758_+	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|532aa|down_6|NZ_CP024949.1_471541_473137_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|517aa|down_7|NZ_CP024949.1_473158_474709_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|676aa|down_8|NZ_CP024949.1_475544_477572_-	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|380aa|down_9|NZ_CP024949.1_477575_478715_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]
GCF_007844035.1_ASM784403v1	NZ_CP024949	Helicobacter pylori strain B136A chromosome, complete genome	4	1215306-1215429	4	CRISPRCasFinder	no		cas2,c2c9_V-U4,cas3,cas14j,DEDDh	Orphan	AATTCTTCTAGTTTTTTTGAAATGATTTCTTCAG	34	0	0	NA	NA	NA	1	1	Orphan	cas2,c2c9_V-U4,cas3,cas14j,DEDDh	NA|262aa|up_3|NZ_CP024949.1_1213295_1214081_-,NA|32aa|up_2|NZ_CP024949.1_1214653_1214749_-,NA|87aa|up_1|NZ_CP024949.1_1214760_1215021_-,NA|113aa|down_0|NZ_CP024949.1_1215821_1216160_-	NA|259aa|up_9|NZ_CP024949.1_1203537_1204314_-	PRK06669, fliH, flagellar assembly protein H; Validated	NA|344aa|up_8|NZ_CP024949.1_1204300_1205332_-	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|221aa|up_7|NZ_CP024949.1_1207090_1207753_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|539aa|up_6|NZ_CP024949.1_1208011_1209628_+	PRK05380, pyrG, CTP synthetase; Validated	NA|517aa|up_5|NZ_CP024949.1_1209637_1211188_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|294aa|up_4|NZ_CP024949.1_1211187_1212069_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|262aa|up_3|NZ_CP024949.1_1213295_1214081_-	NA	NA|32aa|up_2|NZ_CP024949.1_1214653_1214749_-	NA	NA|87aa|up_1|NZ_CP024949.1_1214760_1215021_-	NA	NA|69aa|up_0|NZ_CP024949.1_1215014_1215221_-	cd00737, lyz_endolysin_autolysin, endolysin and autolysin	NA|113aa|down_0|NZ_CP024949.1_1215821_1216160_-	NA	NA|118aa|down_1|NZ_CP024949.1_1216344_1216698_-	sd00010, SLR, Sel1-like repeat	NA|135aa|down_2|NZ_CP024949.1_1216829_1217234_-	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|267aa|down_3|NZ_CP024949.1_1217230_1218031_-	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|78aa|down_4|NZ_CP024949.1_1218037_1218271_-	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|269aa|down_5|NZ_CP024949.1_1218267_1219074_-	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|331aa|down_6|NZ_CP024949.1_1219097_1220090_-	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|261aa|down_7|NZ_CP024949.1_1220339_1221122_+	PRK13980, PRK13980, NAD synthetase; Provisional	NA|313aa|down_8|NZ_CP024949.1_1221118_1222057_+	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|181aa|down_9|NZ_CP024949.1_1221989_1222532_-	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase
