assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007954445.1_ASM795444v1	NZ_CP042346	Staphylococcus aureus strain BSN9S chromosome, complete genome	1	433780-433880	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_8|NZ_CP042346.1_426386_426770_-,NA|98aa|up_6|NZ_CP042346.1_427723_428017_-,NA|34aa|up_1|NZ_CP042346.1_433004_433106_+,NA|86aa|up_0|NZ_CP042346.1_433313_433571_-,NA|221aa|down_1|NZ_CP042346.1_434970_435633_-,NA|179aa|down_7|NZ_CP042346.1_441724_442261_-	NA|194aa|up_9|NZ_CP042346.1_425739_426321_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|NZ_CP042346.1_426386_426770_-	NA	NA|209aa|up_7|NZ_CP042346.1_427024_427651_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|NZ_CP042346.1_427723_428017_-	NA	NA|508aa|up_5|NZ_CP042346.1_428095_429619_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP042346.1_429634_430204_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP042346.1_430695_431451_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP042346.1_431531_432920_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|NZ_CP042346.1_433004_433106_+	NA	NA|86aa|up_0|NZ_CP042346.1_433313_433571_-	NA	NA|319aa|down_0|NZ_CP042346.1_433896_434853_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP042346.1_434970_435633_-	NA	NA|136aa|down_2|NZ_CP042346.1_435775_436183_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP042346.1_436695_437274_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP042346.1_437273_438542_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP042346.1_438579_440046_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP042346.1_440070_441612_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP042346.1_441724_442261_-	NA	NA|235aa|down_8|NZ_CP042346.1_442653_443358_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP042346.1_443756_444029_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_007954445.1_ASM795444v1	NZ_CP042346	Staphylococcus aureus strain BSN9S chromosome, complete genome	2	678087-678179	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP042346.1_674571_674679_+,NA|169aa|down_4|NZ_CP042346.1_681926_682433_+,NA|239aa|down_5|NZ_CP042346.1_682594_683311_+	NA|313aa|up_9|NZ_CP042346.1_668773_669712_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP042346.1_669922_670459_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP042346.1_670627_671104_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP042346.1_671143_672439_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP042346.1_672466_672988_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP042346.1_673486_674497_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP042346.1_674571_674679_+	NA	NA|128aa|up_2|NZ_CP042346.1_674804_675188_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP042346.1_675184_676846_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP042346.1_677233_677869_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP042346.1_678307_679135_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP042346.1_679282_680233_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP042346.1_680287_681007_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP042346.1_680990_681791_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP042346.1_681926_682433_+	NA	NA|239aa|down_5|NZ_CP042346.1_682594_683311_+	NA	NA|263aa|down_6|NZ_CP042346.1_683479_684268_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP042346.1_684518_684893_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|179aa|down_8|NZ_CP042346.1_686608_687145_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|168aa|down_9|NZ_CP042346.1_687125_687629_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_007954445.1_ASM795444v1	NZ_CP042346	Staphylococcus aureus strain BSN9S chromosome, complete genome	3	853896-853981	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	853926-853951|853926-853951|853926-853951|853926-853951|853926-853951	NZ_CP042346.1_2789912-2789937|NZ_CP042346.1_2789968-2789993|NZ_CP042346.1_816888-816863|NZ_CP042346.1_816944-816919|NZ_CP042346.1_960058-960033	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP042346.1_841148_841988_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP042346.1_842161_842812_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP042346.1_842808_843045_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP042346.1_843313_845299_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP042346.1_845306_848153_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP042346.1_848814_849747_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP042346.1_849752_850592_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP042346.1_850599_851085_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP042346.1_851092_852532_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP042346.1_852598_853534_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP042346.1_854413_855325_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP042346.1_855321_856317_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP042346.1_856426_857371_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP042346.1_857944_858532_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP042346.1_858774_859677_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP042346.1_860378_861008_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP042346.1_861767_862781_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP042346.1_862833_863844_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP042346.1_863982_865173_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP042346.1_865294_866056_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_007954445.1_ASM795444v1	NZ_CP042346	Staphylococcus aureus strain BSN9S chromosome, complete genome	4	897248-897329	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	897272-897305|897272-897305	NZ_CP042346.1_1386226-1386193|NZ_CP042346.1_1475388-1475421	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP042346.1_896150_896264_+,NA	NA|206aa|up_9|NZ_CP042346.1_891005_891623_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP042346.1_891777_892272_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP042346.1_892670_893093_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP042346.1_893240_893957_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP042346.1_894039_894579_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP042346.1_894728_895049_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP042346.1_895192_895549_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP042346.1_895706_896087_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP042346.1_896150_896264_+	NA	NA|293aa|up_0|NZ_CP042346.1_896265_897144_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP042346.1_897885_898272_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP042346.1_898264_898561_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP042346.1_898810_899836_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP042346.1_899828_900524_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP042346.1_900541_901363_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP042346.1_901505_902726_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP042346.1_902813_903542_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP042346.1_903565_904294_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP042346.1_904310_904769_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP042346.1_904780_905113_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_007954445.1_ASM795444v1	NZ_CP042346	Staphylococcus aureus strain BSN9S chromosome, complete genome	5	960059-960341	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	960089-960114|960089-960114|960089-960114|960089-960114|960203-960228|960203-960228	NZ_CP042346.1_960033-960058|NZ_CP042346.1_2789937-2789912|NZ_CP042346.1_2789993-2789968|NZ_CP042346.1_816863-816888|NZ_CP042346.1_854007-853982|NZ_CP042346.1_395113-395138	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP042346.1_948947_950444_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP042346.1_950436_950766_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP042346.1_950777_951206_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP042346.1_951198_953604_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP042346.1_953734_954118_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP042346.1_954181_954775_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP042346.1_955190_955568_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP042346.1_955929_957057_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP042346.1_957364_958555_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP042346.1_958663_959908_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP042346.1_960410_961340_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP042346.1_961581_962961_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP042346.1_962950_964156_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP042346.1_964506_965838_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP042346.1_966162_966738_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP042346.1_966742_967267_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP042346.1_967282_967858_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP042346.1_968017_971494_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP042346.1_971494_975148_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP042346.1_975313_976216_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_007954445.1_ASM795444v1	NZ_CP042346	Staphylococcus aureus strain BSN9S chromosome, complete genome	6	1989631-1989709	5	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	1989654-1989686|1989654-1989686|1989654-1989686|1989654-1989686|1989654-1989686|1989654-1989686	NZ_CP042346.1_853962-853994|NZ_CP042346.1_1654569-1654601|NZ_CP042346.1_2624580-2624612|NZ_CP042346.1_1178030-1177998|NZ_CP042346.1_1386180-1386148|NZ_CP042346.1_1475434-1475466	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP042346.1_1983825_1984101_+,NA|129aa|up_1|NZ_CP042346.1_1988086_1988473_-,NA|66aa|down_1|NZ_CP042346.1_1990972_1991170_-,NA|138aa|down_2|NZ_CP042346.1_1991451_1991865_-,NA|37aa|down_3|NZ_CP042346.1_1991893_1992004_-,NA|31aa|down_7|NZ_CP042346.1_1995009_1995102_-	NA|419aa|up_9|NZ_CP042346.1_1981748_1983005_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP042346.1_1983007_1983208_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP042346.1_1983354_1983819_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP042346.1_1983825_1984101_+	NA	NA|406aa|up_5|NZ_CP042346.1_1984378_1985596_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP042346.1_1985711_1986341_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP042346.1_1986330_1987374_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP042346.1_1987370_1988072_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP042346.1_1988086_1988473_-	NA	NA|253aa|up_0|NZ_CP042346.1_1988689_1989448_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP042346.1_1989975_1990962_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|66aa|down_1|NZ_CP042346.1_1990972_1991170_-	NA	NA|138aa|down_2|NZ_CP042346.1_1991451_1991865_-	NA	NA|37aa|down_3|NZ_CP042346.1_1991893_1992004_-	NA	NA|244aa|down_4|NZ_CP042346.1_1992089_1992821_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_5|NZ_CP042346.1_1992822_1994136_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_6|NZ_CP042346.1_1994427_1994928_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_7|NZ_CP042346.1_1995009_1995102_-	NA	DEDDh|185aa|down_8|NZ_CP042346.1_1995316_1995871_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_9|NZ_CP042346.1_1995938_1997009_-	PRK02406, PRK02406, DNA polymerase IV; Validated
GCF_007954445.1_ASM795444v1	NZ_CP042346	Staphylococcus aureus strain BSN9S chromosome, complete genome	7	2224581-2224731	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP042346.1_2219452_2219683_-,NA|364aa|up_0|NZ_CP042346.1_2223471_2224563_+,NA|35aa|down_0|NZ_CP042346.1_2225062_2225167_-,NA|31aa|down_2|NZ_CP042346.1_2227278_2227371_+	NA|237aa|up_9|NZ_CP042346.1_2215062_2215773_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP042346.1_2215893_2216337_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP042346.1_2216536_2216950_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP042346.1_2217407_2218781_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP042346.1_2219452_2219683_-	NA	NA|313aa|up_4|NZ_CP042346.1_2219713_2220652_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP042346.1_2221086_2221752_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP042346.1_2221903_2222224_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP042346.1_2222225_2223206_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP042346.1_2223471_2224563_+	NA	NA|35aa|down_0|NZ_CP042346.1_2225062_2225167_-	NA	NA|379aa|down_1|NZ_CP042346.1_2225853_2226990_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP042346.1_2227278_2227371_+	NA	NA|286aa|down_3|NZ_CP042346.1_2228075_2228933_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP042346.1_2229000_2229783_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP042346.1_2230014_2231820_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP042346.1_2232500_2234039_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP042346.1_2234073_2236206_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP042346.1_2236217_2236652_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP042346.1_2236651_2237758_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_007954445.1_ASM795444v1	NZ_CP042346	Staphylococcus aureus strain BSN9S chromosome, complete genome	8	2348574-2348767	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2348597-2348629|2348597-2348629|2348597-2348629|2348597-2348629|2348597-2348629|2348653-2348688|2348653-2348688|2348653-2348688|2348653-2348688|2348712-2348744|2348712-2348744|2348712-2348744|2348712-2348744	NZ_CP042346.1_853962-853994|NZ_CP042346.1_1475434-1475466|NZ_CP042346.1_2624580-2624612|NZ_CP042346.1_1178030-1177998|NZ_CP042346.1_1386180-1386148|NZ_CP042346.1_1177977-1177942|NZ_CP042346.1_1833056-1833021|NZ_CP042346.1_1654508-1654543|NZ_CP042346.1_2000457-2000492|NZ_CP042346.1_853962-853994|NZ_CP042346.1_2624580-2624612|NZ_CP042346.1_1178030-1177998|NZ_CP042346.1_1386180-1386148	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP042346.1_2339101_2339266_+,NA|106aa|up_8|NZ_CP042346.1_2339510_2339828_+,NA|84aa|up_5|NZ_CP042346.1_2344952_2345204_+,NA|57aa|up_0|NZ_CP042346.1_2348343_2348514_+,NA	NA|55aa|up_9|NZ_CP042346.1_2339101_2339266_+	NA	NA|106aa|up_8|NZ_CP042346.1_2339510_2339828_+	NA	NA|1056aa|up_7|NZ_CP042346.1_2340014_2343182_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP042346.1_2343298_2344564_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP042346.1_2344952_2345204_+	NA	NA|255aa|up_4|NZ_CP042346.1_2345195_2345960_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP042346.1_2346121_2346562_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP042346.1_2346554_2347766_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP042346.1_2347867_2348218_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP042346.1_2348343_2348514_+	NA	NA|341aa|down_0|NZ_CP042346.1_2348908_2349931_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP042346.1_2349950_2350550_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP042346.1_2350556_2350790_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP042346.1_2350795_2351242_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP042346.1_2351255_2351741_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP042346.1_2351737_2352997_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP042346.1_2353059_2353554_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP042346.1_2353555_2354062_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP042346.1_2354092_2355097_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP042346.1_2355266_2355872_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
