assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007964065.1_ASM796406v1	NZ_CP017541	Mannheimia haemolytica strain 1450, complete genome	1	917289-917363	1	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	CCTAGCGGTGGCAGGCACCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|288aa|up_3|NZ_CP017541.1_913684_914548_+,NA|198aa|up_2|NZ_CP017541.1_914671_915265_+,NA	NA|154aa|up_9|NZ_CP017541.1_909179_909641_+	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|298aa|up_8|NZ_CP017541.1_909653_910547_+	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|315aa|up_7|NZ_CP017541.1_910630_911575_-	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|182aa|up_6|NZ_CP017541.1_911667_912213_+	PRK04946, PRK04946, endonuclease SmrB	NA|162aa|up_5|NZ_CP017541.1_912276_912762_+	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function	NA|250aa|up_4|NZ_CP017541.1_912763_913513_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|288aa|up_3|NZ_CP017541.1_913684_914548_+	NA	NA|198aa|up_2|NZ_CP017541.1_914671_915265_+	NA	NA|68aa|up_1|NZ_CP017541.1_915727_915931_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|414aa|up_0|NZ_CP017541.1_915930_917172_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|347aa|down_0|NZ_CP017541.1_917575_918616_-	pfam00665, rve, Integrase core domain	NA|258aa|down_1|NZ_CP017541.1_918769_919543_-	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|1399aa|down_2|NZ_CP017541.1_919691_923888_+	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|365aa|down_3|NZ_CP017541.1_923942_925037_-	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|90aa|down_4|NZ_CP017541.1_925123_925393_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|213aa|down_5|NZ_CP017541.1_925456_926095_+	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|259aa|down_6|NZ_CP017541.1_926178_926955_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|85aa|down_7|NZ_CP017541.1_926964_927219_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|98aa|down_8|NZ_CP017541.1_927220_927514_+	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|down_9|NZ_CP017541.1_927580_928621_-	pfam00665, rve, Integrase core domain
GCF_007964065.1_ASM796406v1	NZ_CP017541	Mannheimia haemolytica strain 1450, complete genome	2	966874-966952	2	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	CCTTAAATATCCTAGATTAGTTTCA	25	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|144aa|up_5|NZ_CP017541.1_962489_962921_+,NA|86aa|up_3|NZ_CP017541.1_964508_964766_+,NA|77aa|up_1|NZ_CP017541.1_965701_965932_+,NA|81aa|down_2|NZ_CP017541.1_968973_969216_+,NA|86aa|down_3|NZ_CP017541.1_969375_969633_-,NA|167aa|down_4|NZ_CP017541.1_969644_970145_-	NA|331aa|up_9|NZ_CP017541.1_957668_958661_-	PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional	NA|144aa|up_8|NZ_CP017541.1_958678_959110_-	pfam12101, DUF3577, Protein of unknown function (DUF3577)	NA|93aa|up_7|NZ_CP017541.1_960078_960357_+	TIGR03756, conj_TIGR03756, integrating conjugative element protein, PFL_4710 family	NA|701aa|up_6|NZ_CP017541.1_960383_962486_+	TIGR03755, conj_TIGR03755, integrating conjugative element protein, PFL_4711 family	NA|144aa|up_5|NZ_CP017541.1_962489_962921_+	NA	NA|363aa|up_4|NZ_CP017541.1_962985_964074_+	pfam13614, AAA_31, AAA domain	NA|86aa|up_3|NZ_CP017541.1_964508_964766_+	NA	NA|106aa|up_2|NZ_CP017541.1_965263_965581_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|77aa|up_1|NZ_CP017541.1_965701_965932_+	NA	NA|185aa|up_0|NZ_CP017541.1_966199_966754_-	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	NA|244aa|down_0|NZ_CP017541.1_967071_967803_-	pfam16793, RepB_primase, RepB DNA-primase from phage plasmid	NA|347aa|down_1|NZ_CP017541.1_967801_968842_+	pfam00665, rve, Integrase core domain	NA|81aa|down_2|NZ_CP017541.1_968973_969216_+	NA	NA|86aa|down_3|NZ_CP017541.1_969375_969633_-	NA	NA|167aa|down_4|NZ_CP017541.1_969644_970145_-	NA	NA|658aa|down_5|NZ_CP017541.1_970648_972622_+	pfam07514, TraI_2, Putative helicase	NA|255aa|down_6|NZ_CP017541.1_972775_973540_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|313aa|down_7|NZ_CP017541.1_974154_975093_+	pfam00899, ThiF, ThiF family	NA|442aa|down_8|NZ_CP017541.1_975089_976415_+	cd08509, PBP2_TmCBP_oligosaccharides_like, The substrate binding domain of a cellulose-binding protein from Thermotoga maritima contains the type 2 periplasmic binding fold	NA|426aa|down_9|NZ_CP017541.1_976423_977701_+	COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
GCF_007964065.1_ASM796406v1	NZ_CP017541	Mannheimia haemolytica strain 1450, complete genome	3	1357385-1357499	3	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	ACAGTGGCGAAATTATTACGATTTATCC	28	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|93aa|up_6|NZ_CP017541.1_1349951_1350230_-,NA|60aa|up_5|NZ_CP017541.1_1353242_1353422_+,NA|116aa|down_6|NZ_CP017541.1_1362731_1363079_+,NA|269aa|down_9|NZ_CP017541.1_1364938_1365745_-	NA|74aa|up_9|NZ_CP017541.1_1348746_1348968_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|162aa|up_8|NZ_CP017541.1_1348964_1349450_+	pfam06891, P2_Phage_GpR, P2 phage tail completion protein R (GpR)	NA|153aa|up_7|NZ_CP017541.1_1349442_1349901_+	pfam05069, Phage_tail_S, Phage virion morphogenesis family	NA|93aa|up_6|NZ_CP017541.1_1349951_1350230_-	NA	NA|60aa|up_5|NZ_CP017541.1_1353242_1353422_+	NA	NA|90aa|up_4|NZ_CP017541.1_1353414_1353684_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|347aa|up_3|NZ_CP017541.1_1353718_1354759_-	pfam00665, rve, Integrase core domain	NA|202aa|up_2|NZ_CP017541.1_1355038_1355644_+	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector	NA|112aa|up_1|NZ_CP017541.1_1355643_1355979_+	PHA02516, W, baseplate wedge subunit; Provisional	NA|306aa|up_0|NZ_CP017541.1_1355975_1356893_+	PHA02568, J, baseplate assembly protein; Provisional	NA|760aa|down_0|NZ_CP017541.1_1357514_1359794_+	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|81aa|down_1|NZ_CP017541.1_1359794_1360037_+	pfam07087, DUF1353, Protein of unknown function (DUF1353)	NA|394aa|down_2|NZ_CP017541.1_1360438_1361620_+	PHA02560, FI, major tail sheath protein; Provisional	NA|169aa|down_3|NZ_CP017541.1_1361628_1362135_+	PHA02600, FII, major tail tube protein; Provisional	NA|105aa|down_4|NZ_CP017541.1_1362213_1362528_+	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14	NA|39aa|down_5|NZ_CP017541.1_1362551_1362668_+	pfam06528, Phage_P2_GpE, Phage P2 GpE	NA|116aa|down_6|NZ_CP017541.1_1362731_1363079_+	NA	NA|146aa|down_7|NZ_CP017541.1_1363080_1363518_+	pfam06995, Phage_P2_GpU, Phage P2 GpU	NA|413aa|down_8|NZ_CP017541.1_1363517_1364756_+	PHA02561, D, tail protein; Provisional	NA|269aa|down_9|NZ_CP017541.1_1364938_1365745_-	NA
GCF_007964065.1_ASM796406v1	NZ_CP017541	Mannheimia haemolytica strain 1450, complete genome	4	1727353-1728454	1,1,4	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	 Type I-U?,Type I-U,Type I-C	GTTTCAATTCNCAGCCACGCGTAGGTGGCTG,GTTTCAATTCACAGCCACGCGTAGGTGGCTG,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	31,31,32	7	7	1728252-1728288|1727584-1727620|1728120-1728153|1728186-1728220|1728253-1728288|1728321-1728354|1728387-1728422	NZ_CP017541.1_1360546-1360510|NZ_CP017541.1_1309051-1309087|NZ_CP017541.1_1360194-1360161|NZ_CP017541.1_1359920-1359886|NZ_CP017541.1_1360545-1360510|NZ_CP017541.1_2702151-2702184|NZ_CP017541.1_2708059-2708094	NA:NA:NA	16,15,15	16	TypeI-U?,TypeI-U,TypeI-C	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|98aa|up_2|NZ_CP017541.1_1723438_1723732_+,NA|98aa|down_2|NZ_CP017541.1_1730120_1730414_-,NA|307aa|down_3|NZ_CP017541.1_1730414_1731335_-,NA|154aa|down_8|NZ_CP017541.1_1737371_1737833_-	NA|110aa|up_9|NZ_CP017541.1_1713095_1713425_+	pfam05939, Phage_min_tail, Phage minor tail protein	NA|157aa|up_8|NZ_CP017541.1_1713424_1713895_+	COG4672, gp18, Phage-related protein [Function unknown]	NA|239aa|up_7|NZ_CP017541.1_1713902_1714619_+	COG4672, gp18, Phage-related protein [Function unknown]	NA|244aa|up_6|NZ_CP017541.1_1714622_1715354_+	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains	NA|210aa|up_5|NZ_CP017541.1_1715622_1716252_+	COG4723, COG4723, Phage-related protein, tail component [Function unknown]	NA|1244aa|up_4|NZ_CP017541.1_1716261_1719993_+	COG4733, COG4733, Phage-related protein, tail component [Function unknown]	NA|1109aa|up_3|NZ_CP017541.1_1719989_1723316_+	pfam09327, DUF1983, Domain of unknown function (DUF1983)	NA|98aa|up_2|NZ_CP017541.1_1723438_1723732_+	NA	NA|501aa|up_1|NZ_CP017541.1_1724036_1725539_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017541.1_1725692_1727168_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017541.1_1728644_1728938_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017541.1_1729004_1730018_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|98aa|down_2|NZ_CP017541.1_1730120_1730414_-	NA	NA|307aa|down_3|NZ_CP017541.1_1730414_1731335_-	NA	cas4|225aa|down_4|NZ_CP017541.1_1731361_1732036_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_5|NZ_CP017541.1_1732035_1732899_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|594aa|down_6|NZ_CP017541.1_1732908_1734690_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|226aa|down_7|NZ_CP017541.1_1734711_1735389_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|154aa|down_8|NZ_CP017541.1_1737371_1737833_-	NA	c2c9_V-U4|379aa|down_9|NZ_CP017541.1_1737991_1739128_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
