assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007973365.1_ASM797336v1	NZ_CP017485	Mannheimia haemolytica strain 39409 chromosome, complete genome	1	1045831-1045905	1	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|74aa|down_7|NZ_CP017485.1_1055648_1055870_+	NA|186aa|up_9|NZ_CP017485.1_1032654_1033212_+	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|347aa|up_8|NZ_CP017485.1_1034464_1035505_-	pfam00665, rve, Integrase core domain	NA|98aa|up_7|NZ_CP017485.1_1035695_1035989_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|up_6|NZ_CP017485.1_1035990_1037031_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|up_5|NZ_CP017485.1_1037114_1037753_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|up_4|NZ_CP017485.1_1037816_1038086_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|up_3|NZ_CP017485.1_1038172_1039267_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|up_2|NZ_CP017485.1_1039321_1043518_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|up_1|NZ_CP017485.1_1043666_1044440_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|347aa|up_0|NZ_CP017485.1_1044593_1045634_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017485.1_1046021_1047263_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017485.1_1047262_1047466_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017485.1_1048265_1048781_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017485.1_1048935_1051764_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NZ_CP017485.1_1051855_1053589_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NZ_CP017485.1_1053830_1054763_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NZ_CP017485.1_1054764_1055562_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NZ_CP017485.1_1055648_1055870_+	NA	DinG|642aa|down_8|NZ_CP017485.1_1056052_1057978_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NZ_CP017485.1_1058051_1058417_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_007973365.1_ASM797336v1	NZ_CP017485	Mannheimia haemolytica strain 39409 chromosome, complete genome	2	1503134-1503763	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type I-U,Type I-C, Type I-U?	GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	32,32,32	0	0	NA	NA	NA:NA:NA	9,9,9	9	TypeI-U,TypeI-C,TypeI-U?	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|227aa|down_2|NZ_CP017485.1_1505443_1506124_+	NA|269aa|up_9|NZ_CP017485.1_1491337_1492144_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP017485.1_1492145_1493336_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP017485.1_1493347_1494100_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP017485.1_1494325_1495858_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|137aa|up_5|NZ_CP017485.1_1496294_1496705_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP017485.1_1496774_1497614_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP017485.1_1497650_1498334_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP017485.1_1498601_1499675_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP017485.1_1499752_1501255_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017485.1_1501408_1502884_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017485.1_1503952_1504246_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017485.1_1504312_1505326_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|227aa|down_2|NZ_CP017485.1_1505443_1506124_+	NA	cas4|222aa|down_3|NZ_CP017485.1_1506225_1506891_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_4|NZ_CP017485.1_1506890_1507754_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|595aa|down_5|NZ_CP017485.1_1507763_1509548_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|226aa|down_6|NZ_CP017485.1_1509544_1510222_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|584aa|down_7|NZ_CP017485.1_1510459_1512211_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|352aa|down_8|NZ_CP017485.1_1512200_1513256_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	cas3|763aa|down_9|NZ_CP017485.1_1513386_1515675_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3
GCF_007973365.1_ASM797336v1	NZ_CP017485	Mannheimia haemolytica strain 39409 chromosome, complete genome	3	2080269-2080374	3	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Orphan	ACTGTCAGATTAGGTTTGATCTTCTACA	28	1	3	2080297-2080346|2080297-2080346|2080297-2080346	NZ_CP017485.1_697670-697719|NZ_CP017485.1_1706351-1706302|NZ_CP017485.1_1240320-1240271	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA|89aa|up_9|NZ_CP017485.1_2067329_2067596_-,NA	NA|89aa|up_9|NZ_CP017485.1_2067329_2067596_-	NA	NA|788aa|up_8|NZ_CP017485.1_2067599_2069963_-	PRK11642, PRK11642, ribonuclease R	NA|107aa|up_7|NZ_CP017485.1_2070103_2070424_+	TIGR00686, Protein_PhnA_homolog, alkylphosphonate utilization operon protein PhnA	NA|325aa|up_6|NZ_CP017485.1_2070475_2071450_-	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|488aa|up_5|NZ_CP017485.1_2071586_2073050_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|275aa|up_4|NZ_CP017485.1_2073133_2073958_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|282aa|up_3|NZ_CP017485.1_2074084_2074930_+	pfam00857, Isochorismatase, Isochorismatase family	NA|981aa|up_2|NZ_CP017485.1_2075386_2078329_+	PRK10811, rne, ribonuclease E; Reviewed	NA|187aa|up_1|NZ_CP017485.1_2078474_2079035_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|347aa|up_0|NZ_CP017485.1_2079197_2080238_+	pfam00665, rve, Integrase core domain	NA|82aa|down_0|NZ_CP017485.1_2080580_2080826_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|345aa|down_1|NZ_CP017485.1_2080838_2081873_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|98aa|down_2|NZ_CP017485.1_2081921_2082215_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|145aa|down_3|NZ_CP017485.1_2082207_2082642_-	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|410aa|down_4|NZ_CP017485.1_2082753_2083983_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_5|NZ_CP017485.1_2083993_2084590_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|209aa|down_6|NZ_CP017485.1_2084591_2085218_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|258aa|down_7|NZ_CP017485.1_2085217_2085991_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|412aa|down_8|NZ_CP017485.1_2085983_2087219_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|453aa|down_9|NZ_CP017485.1_2087221_2088580_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional
