assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007974125.1_ASM797412v1	NZ_CP017493	Mannheimia haemolytica strain 38120 chromosome, complete genome	1	1082031-1082105	1	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|74aa|down_7|NZ_CP017493.1_1091848_1092070_+	NA|186aa|up_9|NZ_CP017493.1_1068854_1069412_+	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|347aa|up_8|NZ_CP017493.1_1070664_1071705_-	pfam00665, rve, Integrase core domain	NA|98aa|up_7|NZ_CP017493.1_1071895_1072189_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|up_6|NZ_CP017493.1_1072190_1073231_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|up_5|NZ_CP017493.1_1073314_1073953_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|up_4|NZ_CP017493.1_1074016_1074286_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|up_3|NZ_CP017493.1_1074372_1075467_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|up_2|NZ_CP017493.1_1075521_1079718_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|up_1|NZ_CP017493.1_1079866_1080640_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|347aa|up_0|NZ_CP017493.1_1080793_1081834_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017493.1_1082221_1083463_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017493.1_1083462_1083666_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017493.1_1084465_1084981_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017493.1_1085135_1087964_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NZ_CP017493.1_1088055_1089789_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NZ_CP017493.1_1090030_1090963_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NZ_CP017493.1_1090964_1091762_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NZ_CP017493.1_1091848_1092070_+	NA	DinG|642aa|down_8|NZ_CP017493.1_1092252_1094178_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NZ_CP017493.1_1094251_1094617_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_007974125.1_ASM797412v1	NZ_CP017493	Mannheimia haemolytica strain 38120 chromosome, complete genome	2	1533771-1534400	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type I-C,Type I-U, Type I-U?	GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	32,32,32	0	0	NA	NA	NA:NA:NA	9,9,9	9	TypeI-C,TypeI-U,TypeI-U?	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|227aa|down_2|NZ_CP017493.1_1536080_1536761_+	NA|269aa|up_9|NZ_CP017493.1_1521974_1522781_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP017493.1_1522782_1523973_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP017493.1_1523984_1524737_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP017493.1_1524962_1526495_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|137aa|up_5|NZ_CP017493.1_1526931_1527342_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP017493.1_1527411_1528251_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP017493.1_1528287_1528971_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP017493.1_1529238_1530312_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP017493.1_1530389_1531892_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017493.1_1532045_1533521_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017493.1_1534589_1534883_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017493.1_1534949_1535963_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|227aa|down_2|NZ_CP017493.1_1536080_1536761_+	NA	cas4|222aa|down_3|NZ_CP017493.1_1536862_1537528_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_4|NZ_CP017493.1_1537527_1538391_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|595aa|down_5|NZ_CP017493.1_1538400_1540185_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|226aa|down_6|NZ_CP017493.1_1540181_1540859_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|584aa|down_7|NZ_CP017493.1_1541096_1542848_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|352aa|down_8|NZ_CP017493.1_1542837_1543893_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	cas3|763aa|down_9|NZ_CP017493.1_1544023_1546312_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3
GCF_007974125.1_ASM797412v1	NZ_CP017493	Mannheimia haemolytica strain 38120 chromosome, complete genome	3	2117174-2117279	3	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Orphan	ACTGTCAGATTAGGTTTGATCTTCTACA	28	1	3	2117202-2117251|2117202-2117251|2117202-2117251	NZ_CP017493.1_733886-733935|NZ_CP017493.1_1736918-1736869|NZ_CP017493.1_1276177-1276128	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA|89aa|up_9|NZ_CP017493.1_2104234_2104501_-,NA	NA|89aa|up_9|NZ_CP017493.1_2104234_2104501_-	NA	NA|788aa|up_8|NZ_CP017493.1_2104504_2106868_-	PRK11642, PRK11642, ribonuclease R	NA|107aa|up_7|NZ_CP017493.1_2107008_2107329_+	TIGR00686, Protein_PhnA_homolog, alkylphosphonate utilization operon protein PhnA	NA|325aa|up_6|NZ_CP017493.1_2107380_2108355_-	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|488aa|up_5|NZ_CP017493.1_2108491_2109955_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|275aa|up_4|NZ_CP017493.1_2110038_2110863_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|282aa|up_3|NZ_CP017493.1_2110989_2111835_+	pfam00857, Isochorismatase, Isochorismatase family	NA|981aa|up_2|NZ_CP017493.1_2112291_2115234_+	PRK10811, rne, ribonuclease E; Reviewed	NA|187aa|up_1|NZ_CP017493.1_2115379_2115940_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|347aa|up_0|NZ_CP017493.1_2116102_2117143_+	pfam00665, rve, Integrase core domain	NA|82aa|down_0|NZ_CP017493.1_2117485_2117731_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|345aa|down_1|NZ_CP017493.1_2117743_2118778_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|98aa|down_2|NZ_CP017493.1_2118826_2119120_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|145aa|down_3|NZ_CP017493.1_2119112_2119547_-	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|410aa|down_4|NZ_CP017493.1_2119658_2120888_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_5|NZ_CP017493.1_2120898_2121495_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|209aa|down_6|NZ_CP017493.1_2121496_2122123_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|258aa|down_7|NZ_CP017493.1_2122122_2122896_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|412aa|down_8|NZ_CP017493.1_2122888_2124124_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|453aa|down_9|NZ_CP017493.1_2124126_2125485_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional
