assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007974925.1_ASM797492v1	NZ_CP017499	Mannheimia haemolytica strain 33702 chromosome, complete genome	1	611526-611631	1	CRISPRCasFinder	no		PD-DExK,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,RT	Orphan	TGTAGAAGATCAAACCTAATCTGACAGT	28	1	3	611554-611603|611554-611603|611554-611603	NZ_CP017499.1_943898-943849|NZ_CP017499.1_1917516-1917565|NZ_CP017499.1_1370496-1370447	NA	1	1	Orphan	PD-DExK,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,RT	NA,NA	NA|453aa|up_9|NZ_CP017499.1_603319_604678_+	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|412aa|up_8|NZ_CP017499.1_604680_605916_+	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|258aa|up_7|NZ_CP017499.1_605908_606682_+	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|209aa|up_6|NZ_CP017499.1_606681_607308_+	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|199aa|up_5|NZ_CP017499.1_607309_607906_+	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|410aa|up_4|NZ_CP017499.1_607916_609146_+	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|145aa|up_3|NZ_CP017499.1_609257_609692_+	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|98aa|up_2|NZ_CP017499.1_609684_609978_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|345aa|up_1|NZ_CP017499.1_610026_611061_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|82aa|up_0|NZ_CP017499.1_611073_611319_+	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|346aa|down_0|NZ_CP017499.1_611661_612699_-	pfam00665, rve, Integrase core domain	NA|253aa|down_1|NZ_CP017499.1_612796_613555_-	pfam13551, HTH_29, Winged helix-turn helix	NA|104aa|down_2|NZ_CP017499.1_613858_614170_+	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|388aa|down_3|NZ_CP017499.1_614280_615444_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|460aa|down_4|NZ_CP017499.1_615560_616940_+	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|333aa|down_5|NZ_CP017499.1_617107_618106_+	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|371aa|down_6|NZ_CP017499.1_618208_619321_+	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|426aa|down_7|NZ_CP017499.1_619326_620604_+	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|207aa|down_8|NZ_CP017499.1_620613_621234_+	COG2976, COG2976, Uncharacterized protein conserved in bacteria [Function unknown]	NA|368aa|down_9|NZ_CP017499.1_621296_622400_-	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated
GCF_007974925.1_ASM797492v1	NZ_CP017499	Mannheimia haemolytica strain 33702 chromosome, complete genome	2	1145017-1145579	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	PD-DExK,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,RT	Type I-C, Type I-U?,Type I-U	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC,GCAGCCACCTACGCGTGGCTGTGAATTGAAAC,GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	32,32,32	0	0	NA	NA	NA:NA:NA	8,8,8	8	TypeI-C,TypeI-U?,TypeI-U	PD-DExK,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,RT	NA|227aa|up_2|NZ_CP017499.1_1142655_1143336_-,NA	cas3|763aa|up_9|NZ_CP017499.1_1133104_1135393_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|352aa|up_8|NZ_CP017499.1_1135523_1136579_+	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|584aa|up_7|NZ_CP017499.1_1136568_1138320_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	cas5|226aa|up_6|NZ_CP017499.1_1138557_1139235_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|595aa|up_5|NZ_CP017499.1_1139231_1141016_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|288aa|up_4|NZ_CP017499.1_1141025_1141889_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|222aa|up_3|NZ_CP017499.1_1141888_1142554_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|227aa|up_2|NZ_CP017499.1_1142655_1143336_-	NA	cas1|338aa|up_1|NZ_CP017499.1_1143453_1144467_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP017499.1_1144533_1144827_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|492aa|down_0|NZ_CP017499.1_1145828_1147304_+	PRK11712, PRK11712, ribonuclease G; Provisional	NA|501aa|down_1|NZ_CP017499.1_1147457_1148960_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|358aa|down_2|NZ_CP017499.1_1149037_1150111_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|228aa|down_3|NZ_CP017499.1_1150378_1151062_+	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|280aa|down_4|NZ_CP017499.1_1151098_1151938_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|137aa|down_5|NZ_CP017499.1_1152007_1152418_-	PRK10328, PRK10328, DNA-binding protein StpA	NA|511aa|down_6|NZ_CP017499.1_1152854_1154387_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|251aa|down_7|NZ_CP017499.1_1154612_1155365_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|397aa|down_8|NZ_CP017499.1_1155376_1156567_+	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|269aa|down_9|NZ_CP017499.1_1156568_1157375_+	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit
GCF_007974925.1_ASM797492v1	NZ_CP017499	Mannheimia haemolytica strain 33702 chromosome, complete genome	3	1567264-1567338	3	CRISPRCasFinder	no	DinG	PD-DExK,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,RT	Type IV-A	CCTAGCGGTGGCAGGCACCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,RT	NA|74aa|up_7|NZ_CP017499.1_1557298_1557520_-,NA	NA|122aa|up_9|NZ_CP017499.1_1554751_1555117_-	PRK01821, PRK01821, hypothetical protein; Provisional	DinG|642aa|up_8|NZ_CP017499.1_1555190_1557116_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|74aa|up_7|NZ_CP017499.1_1557298_1557520_-	NA	NA|266aa|up_6|NZ_CP017499.1_1557606_1558404_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|311aa|up_5|NZ_CP017499.1_1558405_1559338_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|578aa|up_4|NZ_CP017499.1_1559579_1561313_+	PRK11660, PRK11660, putative transporter; Provisional	NA|943aa|up_3|NZ_CP017499.1_1561404_1564233_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|172aa|up_2|NZ_CP017499.1_1564387_1564903_+	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|68aa|up_1|NZ_CP017499.1_1565702_1565906_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|414aa|up_0|NZ_CP017499.1_1565905_1567147_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|347aa|down_0|NZ_CP017499.1_1567534_1568575_-	pfam00665, rve, Integrase core domain	NA|258aa|down_1|NZ_CP017499.1_1568728_1569502_-	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|1399aa|down_2|NZ_CP017499.1_1569650_1573847_+	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|365aa|down_3|NZ_CP017499.1_1573901_1574996_-	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|90aa|down_4|NZ_CP017499.1_1575082_1575352_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|213aa|down_5|NZ_CP017499.1_1575415_1576054_+	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|347aa|down_6|NZ_CP017499.1_1576137_1577178_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|98aa|down_7|NZ_CP017499.1_1577179_1577473_+	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|down_8|NZ_CP017499.1_1577663_1578704_+	pfam00665, rve, Integrase core domain	NA|186aa|down_9|NZ_CP017499.1_1579956_1580514_-	pfam11198, DUF2857, Protein of unknown function (DUF2857)
