assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007976445.1_ASM797644v1	NZ_CP017507	Mannheimia haemolytica strain 28253 chromosome, complete genome	1	1045828-1045902	1	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|74aa|down_7|NZ_CP017507.1_1055645_1055867_+	NA|186aa|up_9|NZ_CP017507.1_1032651_1033209_+	pfam11198, DUF2857, Protein of unknown function (DUF2857)	NA|347aa|up_8|NZ_CP017507.1_1034461_1035502_-	pfam00665, rve, Integrase core domain	NA|98aa|up_7|NZ_CP017507.1_1035692_1035986_-	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|up_6|NZ_CP017507.1_1035987_1037028_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|213aa|up_5|NZ_CP017507.1_1037111_1037750_-	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|90aa|up_4|NZ_CP017507.1_1037813_1038083_-	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|365aa|up_3|NZ_CP017507.1_1038169_1039264_+	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|1399aa|up_2|NZ_CP017507.1_1039318_1043515_-	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|258aa|up_1|NZ_CP017507.1_1043663_1044437_+	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|347aa|up_0|NZ_CP017507.1_1044590_1045631_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017507.1_1046018_1047260_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017507.1_1047259_1047463_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017507.1_1048262_1048778_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017507.1_1048932_1051761_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NZ_CP017507.1_1051852_1053586_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NZ_CP017507.1_1053827_1054760_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NZ_CP017507.1_1054761_1055559_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NZ_CP017507.1_1055645_1055867_+	NA	DinG|642aa|down_8|NZ_CP017507.1_1056049_1057975_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NZ_CP017507.1_1058048_1058414_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_007976445.1_ASM797644v1	NZ_CP017507	Mannheimia haemolytica strain 28253 chromosome, complete genome	2	1503117-1503746	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Type I-U,Type I-C, Type I-U?	GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	32,32,32	0	0	NA	NA	NA:NA:NA	9,9,7	9	TypeI-U,TypeI-C,TypeI-U?	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA,NA|227aa|down_2|NZ_CP017507.1_1505426_1506107_+	NA|269aa|up_9|NZ_CP017507.1_1491320_1492127_-	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit	NA|397aa|up_8|NZ_CP017507.1_1492128_1493319_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|251aa|up_7|NZ_CP017507.1_1493330_1494083_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|511aa|up_6|NZ_CP017507.1_1494308_1495841_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|137aa|up_5|NZ_CP017507.1_1496277_1496688_+	PRK10328, PRK10328, DNA-binding protein StpA	NA|280aa|up_4|NZ_CP017507.1_1496757_1497597_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|228aa|up_3|NZ_CP017507.1_1497633_1498317_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|358aa|up_2|NZ_CP017507.1_1498584_1499658_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|501aa|up_1|NZ_CP017507.1_1499735_1501238_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017507.1_1501391_1502867_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017507.1_1503935_1504229_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017507.1_1504295_1505309_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|227aa|down_2|NZ_CP017507.1_1505426_1506107_+	NA	cas4|222aa|down_3|NZ_CP017507.1_1506208_1506874_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_4|NZ_CP017507.1_1506873_1507737_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|595aa|down_5|NZ_CP017507.1_1507746_1509531_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|226aa|down_6|NZ_CP017507.1_1509527_1510205_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|584aa|down_7|NZ_CP017507.1_1510442_1512194_-	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	NA|352aa|down_8|NZ_CP017507.1_1512183_1513239_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	cas3|763aa|down_9|NZ_CP017507.1_1513369_1515658_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3
GCF_007976445.1_ASM797644v1	NZ_CP017507	Mannheimia haemolytica strain 28253 chromosome, complete genome	3	2080234-2080339	3	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	Orphan	ACTGTCAGATTAGGTTTGATCTTCTACA	28	1	3	2080262-2080311|2080262-2080311|2080262-2080311	NZ_CP017507.1_697667-697716|NZ_CP017507.1_1706316-1706267|NZ_CP017507.1_1240303-1240254	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,RT	NA|89aa|up_9|NZ_CP017507.1_2067294_2067561_-,NA	NA|89aa|up_9|NZ_CP017507.1_2067294_2067561_-	NA	NA|788aa|up_8|NZ_CP017507.1_2067564_2069928_-	PRK11642, PRK11642, ribonuclease R	NA|107aa|up_7|NZ_CP017507.1_2070068_2070389_+	TIGR00686, Protein_PhnA_homolog, alkylphosphonate utilization operon protein PhnA	NA|325aa|up_6|NZ_CP017507.1_2070440_2071415_-	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|488aa|up_5|NZ_CP017507.1_2071551_2073015_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|275aa|up_4|NZ_CP017507.1_2073098_2073923_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|282aa|up_3|NZ_CP017507.1_2074049_2074895_+	pfam00857, Isochorismatase, Isochorismatase family	NA|981aa|up_2|NZ_CP017507.1_2075351_2078294_+	PRK10811, rne, ribonuclease E; Reviewed	NA|187aa|up_1|NZ_CP017507.1_2078439_2079000_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|347aa|up_0|NZ_CP017507.1_2079162_2080203_+	pfam00665, rve, Integrase core domain	NA|82aa|down_0|NZ_CP017507.1_2080545_2080791_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|345aa|down_1|NZ_CP017507.1_2080803_2081838_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|98aa|down_2|NZ_CP017507.1_2081886_2082180_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|145aa|down_3|NZ_CP017507.1_2082172_2082607_-	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|410aa|down_4|NZ_CP017507.1_2082718_2083948_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_5|NZ_CP017507.1_2083958_2084555_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|209aa|down_6|NZ_CP017507.1_2084556_2085183_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|258aa|down_7|NZ_CP017507.1_2085182_2085956_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|412aa|down_8|NZ_CP017507.1_2085948_2087184_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|453aa|down_9|NZ_CP017507.1_2087186_2088545_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional
