assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007976765.1_ASM797676v1	NZ_CP017509	Mannheimia haemolytica strain 28226 chromosome, complete genome	1	623894-623999	1	CRISPRCasFinder	no		PD-DExK,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,RT	Orphan	TGTAGAAGATCAAACCTAATCTGACAGT	28	1	3	623922-623971|623922-623971|623922-623971	NZ_CP017509.1_956304-956255|NZ_CP017509.1_1928162-1928211|NZ_CP017509.1_1327401-1327352	NA	1	1	Orphan	PD-DExK,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,RT	NA,NA	NA|453aa|up_9|NZ_CP017509.1_615687_617046_+	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|412aa|up_8|NZ_CP017509.1_617048_618284_+	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|258aa|up_7|NZ_CP017509.1_618276_619050_+	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|209aa|up_6|NZ_CP017509.1_619049_619676_+	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|199aa|up_5|NZ_CP017509.1_619677_620274_+	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|410aa|up_4|NZ_CP017509.1_620284_621514_+	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|145aa|up_3|NZ_CP017509.1_621625_622060_+	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|98aa|up_2|NZ_CP017509.1_622052_622346_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|345aa|up_1|NZ_CP017509.1_622394_623429_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|82aa|up_0|NZ_CP017509.1_623441_623687_+	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|346aa|down_0|NZ_CP017509.1_624029_625067_-	pfam00665, rve, Integrase core domain	NA|253aa|down_1|NZ_CP017509.1_625164_625923_-	pfam13551, HTH_29, Winged helix-turn helix	NA|104aa|down_2|NZ_CP017509.1_626226_626538_+	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|388aa|down_3|NZ_CP017509.1_626648_627812_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|460aa|down_4|NZ_CP017509.1_627928_629308_+	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|333aa|down_5|NZ_CP017509.1_629475_630474_+	PRK10856, PRK10856, cytoskeleton protein RodZ	NA|371aa|down_6|NZ_CP017509.1_630576_631689_+	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|426aa|down_7|NZ_CP017509.1_631694_632972_+	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|207aa|down_8|NZ_CP017509.1_632981_633602_+	COG2976, COG2976, Uncharacterized protein conserved in bacteria [Function unknown]	NA|368aa|down_9|NZ_CP017509.1_633664_634768_-	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated
GCF_007976765.1_ASM797676v1	NZ_CP017509	Mannheimia haemolytica strain 28226 chromosome, complete genome	2	1157397-1158087	2,1,1	CRISPRCasFinder,PILER-CR,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	PD-DExK,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,RT	Type I-C, Type I-U?,Type I-U	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC,CAGCCACCTACGCGTGGCTGTGAATTGAAAC,CAGCCACCTACGCGTGGCTGTGAATTGAAAC	32,31,31	0	0	NA	NA	NA:NA:NA	10,10,10	10	TypeI-C,TypeI-U?,TypeI-U	PD-DExK,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,RT	NA|227aa|up_2|NZ_CP017509.1_1155035_1155716_-,NA	cas3|763aa|up_9|NZ_CP017509.1_1145484_1147773_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|352aa|up_8|NZ_CP017509.1_1147903_1148959_+	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|584aa|up_7|NZ_CP017509.1_1148948_1150700_+	COG0433, COG0433,  HerA helicase [Replication, recombination, and repair]	cas5|226aa|up_6|NZ_CP017509.1_1150937_1151615_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|595aa|up_5|NZ_CP017509.1_1151611_1153396_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|288aa|up_4|NZ_CP017509.1_1153405_1154269_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|222aa|up_3|NZ_CP017509.1_1154268_1154934_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|227aa|up_2|NZ_CP017509.1_1155035_1155716_-	NA	cas1|338aa|up_1|NZ_CP017509.1_1155833_1156847_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP017509.1_1156913_1157207_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|492aa|down_0|NZ_CP017509.1_1158336_1159812_+	PRK11712, PRK11712, ribonuclease G; Provisional	NA|501aa|down_1|NZ_CP017509.1_1159965_1161468_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|358aa|down_2|NZ_CP017509.1_1161545_1162619_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|228aa|down_3|NZ_CP017509.1_1162886_1163570_+	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|280aa|down_4|NZ_CP017509.1_1163606_1164446_-	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|137aa|down_5|NZ_CP017509.1_1164515_1164926_-	PRK10328, PRK10328, DNA-binding protein StpA	NA|511aa|down_6|NZ_CP017509.1_1165362_1166895_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|251aa|down_7|NZ_CP017509.1_1167120_1167873_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|397aa|down_8|NZ_CP017509.1_1167884_1169075_+	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|269aa|down_9|NZ_CP017509.1_1169076_1169883_+	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit
GCF_007976765.1_ASM797676v1	NZ_CP017509	Mannheimia haemolytica strain 28226 chromosome, complete genome	3	1524053-1524127	3	CRISPRCasFinder	no	DinG	PD-DExK,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,RT	Type IV-A	CCTAGCGGTGGCAGGCACCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,WYL,RT	NA|74aa|up_7|NZ_CP017509.1_1514087_1514309_-,NA	NA|122aa|up_9|NZ_CP017509.1_1511540_1511906_-	PRK01821, PRK01821, hypothetical protein; Provisional	DinG|642aa|up_8|NZ_CP017509.1_1511979_1513905_-	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|74aa|up_7|NZ_CP017509.1_1514087_1514309_-	NA	NA|266aa|up_6|NZ_CP017509.1_1514395_1515193_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|311aa|up_5|NZ_CP017509.1_1515194_1516127_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|578aa|up_4|NZ_CP017509.1_1516368_1518102_+	PRK11660, PRK11660, putative transporter; Provisional	NA|943aa|up_3|NZ_CP017509.1_1518193_1521022_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|172aa|up_2|NZ_CP017509.1_1521176_1521692_+	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|68aa|up_1|NZ_CP017509.1_1522491_1522695_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|414aa|up_0|NZ_CP017509.1_1522694_1523936_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|347aa|down_0|NZ_CP017509.1_1524323_1525364_-	pfam00665, rve, Integrase core domain	NA|258aa|down_1|NZ_CP017509.1_1525517_1526291_-	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|1399aa|down_2|NZ_CP017509.1_1526439_1530636_+	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|365aa|down_3|NZ_CP017509.1_1530690_1531785_-	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|90aa|down_4|NZ_CP017509.1_1531871_1532141_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|213aa|down_5|NZ_CP017509.1_1532204_1532843_+	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|347aa|down_6|NZ_CP017509.1_1532926_1533967_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|98aa|down_7|NZ_CP017509.1_1533968_1534262_+	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|down_8|NZ_CP017509.1_1534452_1535493_+	pfam00665, rve, Integrase core domain	NA|186aa|down_9|NZ_CP017509.1_1536745_1537303_-	pfam11198, DUF2857, Protein of unknown function (DUF2857)
