assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007978905.1_ASM797890v1	NZ_CP017521	Mannheimia haemolytica strain 1584 chromosome, complete genome	1	917560-917634	1	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	CCTAGCGGTGGCAGGCACCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|288aa|up_3|NZ_CP017521.1_913955_914819_+,NA|198aa|up_2|NZ_CP017521.1_914942_915536_+,NA	NA|154aa|up_9|NZ_CP017521.1_909450_909912_+	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|298aa|up_8|NZ_CP017521.1_909924_910818_+	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|315aa|up_7|NZ_CP017521.1_910901_911846_-	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|182aa|up_6|NZ_CP017521.1_911938_912484_+	PRK04946, PRK04946, endonuclease SmrB	NA|162aa|up_5|NZ_CP017521.1_912547_913033_+	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function	NA|250aa|up_4|NZ_CP017521.1_913034_913784_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|288aa|up_3|NZ_CP017521.1_913955_914819_+	NA	NA|198aa|up_2|NZ_CP017521.1_914942_915536_+	NA	NA|68aa|up_1|NZ_CP017521.1_915998_916202_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|414aa|up_0|NZ_CP017521.1_916201_917443_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|347aa|down_0|NZ_CP017521.1_917846_918887_-	pfam00665, rve, Integrase core domain	NA|258aa|down_1|NZ_CP017521.1_919040_919814_-	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|1399aa|down_2|NZ_CP017521.1_919962_924159_+	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|365aa|down_3|NZ_CP017521.1_924213_925308_-	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|90aa|down_4|NZ_CP017521.1_925394_925664_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|213aa|down_5|NZ_CP017521.1_925727_926366_+	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|259aa|down_6|NZ_CP017521.1_926449_927226_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|85aa|down_7|NZ_CP017521.1_927235_927490_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|98aa|down_8|NZ_CP017521.1_927491_927785_+	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|down_9|NZ_CP017521.1_927851_928892_-	pfam00665, rve, Integrase core domain
GCF_007978905.1_ASM797890v1	NZ_CP017521	Mannheimia haemolytica strain 1584 chromosome, complete genome	2	1568928-1569042	2	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Orphan	GGATAAATCGTAATAATTTCGCCACTGT	28	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|269aa|up_9|NZ_CP017521.1_1560669_1561476_+,NA|116aa|up_6|NZ_CP017521.1_1563335_1563683_-,NA|60aa|down_5|NZ_CP017521.1_1573004_1573184_-,NA|93aa|down_6|NZ_CP017521.1_1576196_1576475_+	NA|269aa|up_9|NZ_CP017521.1_1560669_1561476_+	NA	NA|413aa|up_8|NZ_CP017521.1_1561658_1562897_-	PHA02561, D, tail protein; Provisional	NA|146aa|up_7|NZ_CP017521.1_1562896_1563334_-	pfam06995, Phage_P2_GpU, Phage P2 GpU	NA|116aa|up_6|NZ_CP017521.1_1563335_1563683_-	NA	NA|39aa|up_5|NZ_CP017521.1_1563746_1563863_-	pfam06528, Phage_P2_GpE, Phage P2 GpE	NA|105aa|up_4|NZ_CP017521.1_1563886_1564201_-	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14	NA|169aa|up_3|NZ_CP017521.1_1564279_1564786_-	PHA02600, FII, major tail tube protein; Provisional	NA|394aa|up_2|NZ_CP017521.1_1564794_1565976_-	PHA02560, FI, major tail sheath protein; Provisional	NA|81aa|up_1|NZ_CP017521.1_1566389_1566632_-	pfam07087, DUF1353, Protein of unknown function (DUF1353)	NA|760aa|up_0|NZ_CP017521.1_1566632_1568912_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|306aa|down_0|NZ_CP017521.1_1569533_1570451_-	PHA02568, J, baseplate assembly protein; Provisional	NA|112aa|down_1|NZ_CP017521.1_1570447_1570783_-	PHA02516, W, baseplate wedge subunit; Provisional	NA|202aa|down_2|NZ_CP017521.1_1570782_1571388_-	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector	NA|347aa|down_3|NZ_CP017521.1_1571667_1572708_+	pfam00665, rve, Integrase core domain	NA|90aa|down_4|NZ_CP017521.1_1572742_1573012_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|60aa|down_5|NZ_CP017521.1_1573004_1573184_-	NA	NA|93aa|down_6|NZ_CP017521.1_1576196_1576475_+	NA	NA|153aa|down_7|NZ_CP017521.1_1576525_1576984_-	pfam05069, Phage_tail_S, Phage virion morphogenesis family	NA|162aa|down_8|NZ_CP017521.1_1576976_1577462_-	pfam06891, P2_Phage_GpR, P2 phage tail completion protein R (GpR)	NA|74aa|down_9|NZ_CP017521.1_1577458_1577680_-	PHA00080, PHA00080, DksA-like zinc finger domain containing protein
GCF_007978905.1_ASM797890v1	NZ_CP017521	Mannheimia haemolytica strain 1584 chromosome, complete genome	3	1745522-1746422	1,1,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,cas3	PD-DExK,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	Type I-U, Type I-U?,Type I-C	GTTTCAATTCACAGCCACGCGTAGGTGGCTG,GTTTCAATTCACAGCCACGCGTAGGTGGCTG,GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	31,31,32	5	5	1746220-1746256|1745753-1745789|1745956-1745989|1746221-1746256|1746289-1746322	NZ_CP017521.1_1565869-1565905|NZ_CP017521.1_1617376-1617340|NZ_CP017521.1_1625553-1625520|NZ_CP017521.1_1565870-1565905|NZ_CP017521.1_2716684-2716717	NA:NA:NA	13,12,12	13	TypeI-U,TypeI-U?,TypeI-C	PD-DExK,cas3,DEDDh,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4,RT	NA|98aa|up_2|NZ_CP017521.1_1741607_1741901_+,NA|98aa|down_2|NZ_CP017521.1_1748088_1748382_-,NA|307aa|down_3|NZ_CP017521.1_1748382_1749303_-,NA|154aa|down_8|NZ_CP017521.1_1755339_1755801_-	NA|1189aa|up_9|NZ_CP017521.1_1728176_1731743_+	TIGR01541, tail_length_tape, phage tail tape measure protein, lambda family	NA|110aa|up_8|NZ_CP017521.1_1731742_1732072_+	pfam05939, Phage_min_tail, Phage minor tail protein	NA|239aa|up_7|NZ_CP017521.1_1732071_1732788_+	COG4672, gp18, Phage-related protein [Function unknown]	NA|244aa|up_6|NZ_CP017521.1_1732791_1733523_+	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains	NA|210aa|up_5|NZ_CP017521.1_1733791_1734421_+	COG4723, COG4723, Phage-related protein, tail component [Function unknown]	NA|1244aa|up_4|NZ_CP017521.1_1734430_1738162_+	COG4733, COG4733, Phage-related protein, tail component [Function unknown]	NA|1109aa|up_3|NZ_CP017521.1_1738158_1741485_+	pfam09327, DUF1983, Domain of unknown function (DUF1983)	NA|98aa|up_2|NZ_CP017521.1_1741607_1741901_+	NA	NA|501aa|up_1|NZ_CP017521.1_1742205_1743708_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|492aa|up_0|NZ_CP017521.1_1743861_1745337_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas2|98aa|down_0|NZ_CP017521.1_1746612_1746906_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|338aa|down_1|NZ_CP017521.1_1746972_1747986_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	NA|98aa|down_2|NZ_CP017521.1_1748088_1748382_-	NA	NA|307aa|down_3|NZ_CP017521.1_1748382_1749303_-	NA	cas4|225aa|down_4|NZ_CP017521.1_1749329_1750004_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|288aa|down_5|NZ_CP017521.1_1750003_1750867_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|594aa|down_6|NZ_CP017521.1_1750876_1752658_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|226aa|down_7|NZ_CP017521.1_1752679_1753357_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|154aa|down_8|NZ_CP017521.1_1755339_1755801_-	NA	c2c9_V-U4|379aa|down_9|NZ_CP017521.1_1755959_1757096_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
