assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007979905.1_ASM797990v1	NZ_CP017527	Mannheimia haemolytica strain 1563 chromosome, complete genome	1	915040-915114	1	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,RT	Orphan	CCTAGCGGTGGCAGGCACCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,RT	NA|288aa|up_3|NZ_CP017527.1_911435_912299_+,NA|198aa|up_2|NZ_CP017527.1_912422_913016_+,NA	NA|154aa|up_9|NZ_CP017527.1_906930_907392_+	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|298aa|up_8|NZ_CP017527.1_907404_908298_+	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|315aa|up_7|NZ_CP017527.1_908381_909326_-	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|182aa|up_6|NZ_CP017527.1_909418_909964_+	PRK04946, PRK04946, endonuclease SmrB	NA|162aa|up_5|NZ_CP017527.1_910027_910513_+	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function	NA|250aa|up_4|NZ_CP017527.1_910514_911264_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|288aa|up_3|NZ_CP017527.1_911435_912299_+	NA	NA|198aa|up_2|NZ_CP017527.1_912422_913016_+	NA	NA|68aa|up_1|NZ_CP017527.1_913478_913682_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|414aa|up_0|NZ_CP017527.1_913681_914923_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|347aa|down_0|NZ_CP017527.1_915326_916367_-	pfam00665, rve, Integrase core domain	NA|258aa|down_1|NZ_CP017527.1_916520_917294_-	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|1399aa|down_2|NZ_CP017527.1_917442_921639_+	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|365aa|down_3|NZ_CP017527.1_921693_922788_-	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|90aa|down_4|NZ_CP017527.1_922874_923144_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|213aa|down_5|NZ_CP017527.1_923207_923846_+	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|259aa|down_6|NZ_CP017527.1_923929_924706_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|85aa|down_7|NZ_CP017527.1_924715_924970_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|98aa|down_8|NZ_CP017527.1_924971_925265_+	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|down_9|NZ_CP017527.1_925331_926372_-	pfam00665, rve, Integrase core domain
GCF_007979905.1_ASM797990v1	NZ_CP017527	Mannheimia haemolytica strain 1563 chromosome, complete genome	2	1332783-1332897	2	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,RT	Orphan	ACAGTGGCGAAATTATTACGATTTATCC	28	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,RT	NA|93aa|up_5|NZ_CP017527.1_1325349_1325628_-,NA|116aa|down_6|NZ_CP017527.1_1338157_1338505_+,NA|269aa|down_9|NZ_CP017527.1_1340364_1341171_-	NA|152aa|up_9|NZ_CP017527.1_1323540_1323996_+	TIGR03495, Probable_spanin_inner_membrane_subunit, phage lysis regulatory protein, LysB family	NA|74aa|up_8|NZ_CP017527.1_1324144_1324366_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|162aa|up_7|NZ_CP017527.1_1324362_1324848_+	pfam06891, P2_Phage_GpR, P2 phage tail completion protein R (GpR)	NA|153aa|up_6|NZ_CP017527.1_1324840_1325299_+	pfam05069, Phage_tail_S, Phage virion morphogenesis family	NA|93aa|up_5|NZ_CP017527.1_1325349_1325628_-	NA	NA|90aa|up_4|NZ_CP017527.1_1328812_1329082_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|347aa|up_3|NZ_CP017527.1_1329116_1330157_-	pfam00665, rve, Integrase core domain	NA|202aa|up_2|NZ_CP017527.1_1330436_1331042_+	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector	NA|112aa|up_1|NZ_CP017527.1_1331041_1331377_+	PHA02516, W, baseplate wedge subunit; Provisional	NA|306aa|up_0|NZ_CP017527.1_1331373_1332291_+	PHA02568, J, baseplate assembly protein; Provisional	NA|760aa|down_0|NZ_CP017527.1_1332912_1335192_+	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|81aa|down_1|NZ_CP017527.1_1335192_1335435_+	pfam07087, DUF1353, Protein of unknown function (DUF1353)	NA|394aa|down_2|NZ_CP017527.1_1335864_1337046_+	PHA02560, FI, major tail sheath protein; Provisional	NA|169aa|down_3|NZ_CP017527.1_1337054_1337561_+	PHA02600, FII, major tail tube protein; Provisional	NA|105aa|down_4|NZ_CP017527.1_1337639_1337954_+	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14	NA|39aa|down_5|NZ_CP017527.1_1337977_1338094_+	pfam06528, Phage_P2_GpE, Phage P2 GpE	NA|116aa|down_6|NZ_CP017527.1_1338157_1338505_+	NA	NA|146aa|down_7|NZ_CP017527.1_1338506_1338944_+	pfam06995, Phage_P2_GpU, Phage P2 GpU	NA|413aa|down_8|NZ_CP017527.1_1338943_1340182_+	PHA02561, D, tail protein; Provisional	NA|269aa|down_9|NZ_CP017527.1_1340364_1341171_-	NA
GCF_007979905.1_ASM797990v1	NZ_CP017527	Mannheimia haemolytica strain 1563 chromosome, complete genome	3	1793502-1794404	3,1,1	CRISPRCasFinder,PILER-CR,CRT	no	cas3,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2	PD-DExK,cas3,DEDDh,WYL,DinG,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,RT	Type I-C, Type I-U?,Type I-U	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC,CAGCCACCTACGCGTGGCTGTGAATTGAAAC,CAGCCACCTACGCGTGGCTG	32,31,20	7	7	1793534-1793569|1793602-1793635|1793668-1793703|1793736-1793770|1793803-1793836|1794202-1794238|1793668-1793704	NZ_CP017527.1_2677927-2677892|NZ_CP017527.1_2672017-2671984|NZ_CP017527.1_1335936-1335971|NZ_CP017527.1_1335284-1335318|NZ_CP017527.1_1335587-1335620|NZ_CP017527.1_1284485-1284449|NZ_CP017527.1_1335936-1335972	NA:NA:NA	13,13,13	13	TypeI-C,TypeI-U?,TypeI-U	PD-DExK,cas3,DEDDh,WYL,DinG,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,RT	NA|154aa|up_8|NZ_CP017527.1_1784122_1784584_+,NA|307aa|up_3|NZ_CP017527.1_1790620_1791541_+,NA|98aa|up_2|NZ_CP017527.1_1791541_1791835_+,NA|98aa|down_2|NZ_CP017527.1_1798089_1798383_-	c2c9_V-U4|379aa|up_9|NZ_CP017527.1_1782827_1783964_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|154aa|up_8|NZ_CP017527.1_1784122_1784584_+	NA	cas5|226aa|up_7|NZ_CP017527.1_1786566_1787244_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|594aa|up_6|NZ_CP017527.1_1787265_1789047_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|288aa|up_5|NZ_CP017527.1_1789056_1789920_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|225aa|up_4|NZ_CP017527.1_1789919_1790594_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|307aa|up_3|NZ_CP017527.1_1790620_1791541_+	NA	NA|98aa|up_2|NZ_CP017527.1_1791541_1791835_+	NA	cas1|338aa|up_1|NZ_CP017527.1_1791937_1792951_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP017527.1_1793017_1793311_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|492aa|down_0|NZ_CP017527.1_1794653_1796129_+	PRK11712, PRK11712, ribonuclease G; Provisional	NA|501aa|down_1|NZ_CP017527.1_1796282_1797785_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|98aa|down_2|NZ_CP017527.1_1798089_1798383_-	NA	NA|1109aa|down_3|NZ_CP017527.1_1798505_1801832_-	pfam09327, DUF1983, Domain of unknown function (DUF1983)	NA|1244aa|down_4|NZ_CP017527.1_1801828_1805560_-	COG4733, COG4733, Phage-related protein, tail component [Function unknown]	NA|210aa|down_5|NZ_CP017527.1_1805569_1806199_-	COG4723, COG4723, Phage-related protein, tail component [Function unknown]	NA|244aa|down_6|NZ_CP017527.1_1806467_1807199_-	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains	NA|239aa|down_7|NZ_CP017527.1_1807202_1807919_-	COG4672, gp18, Phage-related protein [Function unknown]	NA|110aa|down_8|NZ_CP017527.1_1807918_1808248_-	pfam05939, Phage_min_tail, Phage minor tail protein	NA|1189aa|down_9|NZ_CP017527.1_1808247_1811814_-	TIGR01541, tail_length_tape, phage tail tape measure protein, lambda family
