assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007980145.1_ASM798014v1	NZ_CP017529	Mannheimia haemolytica strain 1560 chromosome, complete genome	1	904787-904861	1	CRISPRCasFinder	no		PD-DExK,cas3,DEDDh,WYL,DinG,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,RT	Orphan	CCTAGCGGTGGCAGGCACCAGAA	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,RT	NA|288aa|up_3|NZ_CP017529.1_901182_902046_+,NA|198aa|up_2|NZ_CP017529.1_902169_902763_+,NA	NA|154aa|up_9|NZ_CP017529.1_896677_897139_+	pfam14534, DUF4440, Domain of unknown function (DUF4440)	NA|298aa|up_8|NZ_CP017529.1_897151_898045_+	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|315aa|up_7|NZ_CP017529.1_898128_899073_-	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|182aa|up_6|NZ_CP017529.1_899165_899711_+	PRK04946, PRK04946, endonuclease SmrB	NA|162aa|up_5|NZ_CP017529.1_899774_900260_+	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function	NA|250aa|up_4|NZ_CP017529.1_900261_901011_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|288aa|up_3|NZ_CP017529.1_901182_902046_+	NA	NA|198aa|up_2|NZ_CP017529.1_902169_902763_+	NA	NA|68aa|up_1|NZ_CP017529.1_903225_903429_+	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|414aa|up_0|NZ_CP017529.1_903428_904670_+	pfam07804, HipA_C, HipA-like C-terminal domain	NA|347aa|down_0|NZ_CP017529.1_905073_906114_-	pfam00665, rve, Integrase core domain	NA|258aa|down_1|NZ_CP017529.1_906267_907041_-	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]	NA|1399aa|down_2|NZ_CP017529.1_907189_911386_+	pfam02395, Peptidase_S6, Immunoglobulin A1 protease	NA|365aa|down_3|NZ_CP017529.1_911440_912535_-	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional	NA|90aa|down_4|NZ_CP017529.1_912621_912891_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|213aa|down_5|NZ_CP017529.1_912954_913593_+	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA	NA|259aa|down_6|NZ_CP017529.1_913676_914453_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|85aa|down_7|NZ_CP017529.1_914462_914717_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|98aa|down_8|NZ_CP017529.1_914718_915012_+	pfam04175, DUF406, Protein of unknown function (DUF406)	NA|347aa|down_9|NZ_CP017529.1_915078_916119_-	pfam00665, rve, Integrase core domain
GCF_007980145.1_ASM798014v1	NZ_CP017529	Mannheimia haemolytica strain 1560 chromosome, complete genome	2	1139434-1139508	2	CRISPRCasFinder	no	DinG	PD-DExK,cas3,DEDDh,WYL,DinG,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,RT	Type IV-A	TTCTGGTGTCTGCCACCGCTAGG	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,DEDDh,WYL,DinG,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,RT	NA|82aa|up_9|NZ_CP017529.1_1129962_1130208_+,NA|81aa|up_8|NZ_CP017529.1_1130216_1130459_+,NA|281aa|up_7|NZ_CP017529.1_1130722_1131565_+,NA|138aa|up_6|NZ_CP017529.1_1131679_1132093_+,NA|81aa|up_4|NZ_CP017529.1_1133414_1133657_+,NA|74aa|down_7|NZ_CP017529.1_1149260_1149482_+	NA|82aa|up_9|NZ_CP017529.1_1129962_1130208_+	NA	NA|81aa|up_8|NZ_CP017529.1_1130216_1130459_+	NA	NA|281aa|up_7|NZ_CP017529.1_1130722_1131565_+	NA	NA|138aa|up_6|NZ_CP017529.1_1131679_1132093_+	NA	NA|328aa|up_5|NZ_CP017529.1_1132341_1133325_+	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|81aa|up_4|NZ_CP017529.1_1133414_1133657_+	NA	NA|662aa|up_3|NZ_CP017529.1_1134129_1136115_+	pfam07514, TraI_2, Putative helicase	NA|255aa|up_2|NZ_CP017529.1_1136270_1137035_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|239aa|up_1|NZ_CP017529.1_1137077_1137794_-	pfam12686, DUF3800, Protein of unknown function (DUF3800)	NA|366aa|up_0|NZ_CP017529.1_1138123_1139221_+	pfam00665, rve, Integrase core domain	NA|414aa|down_0|NZ_CP017529.1_1139624_1140866_-	pfam07804, HipA_C, HipA-like C-terminal domain	NA|68aa|down_1|NZ_CP017529.1_1140865_1141069_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|172aa|down_2|NZ_CP017529.1_1141877_1142393_-	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional	NA|943aa|down_3|NZ_CP017529.1_1142547_1145376_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|578aa|down_4|NZ_CP017529.1_1145467_1147201_-	PRK11660, PRK11660, putative transporter; Provisional	NA|311aa|down_5|NZ_CP017529.1_1147442_1148375_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|266aa|down_6|NZ_CP017529.1_1148376_1149174_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|74aa|down_7|NZ_CP017529.1_1149260_1149482_+	NA	DinG|642aa|down_8|NZ_CP017529.1_1149664_1151590_+	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	NA|122aa|down_9|NZ_CP017529.1_1151663_1152029_+	PRK01821, PRK01821, hypothetical protein; Provisional
GCF_007980145.1_ASM798014v1	NZ_CP017529	Mannheimia haemolytica strain 1560 chromosome, complete genome	3	1755109-1756211	3,1,1	CRISPRCasFinder,PILER-CR,CRT	no	cas3,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2	PD-DExK,cas3,DEDDh,WYL,DinG,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,RT	 Type I-U?,Type I-C,Type I-U	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC,CAGCCACCTACGCGTGGCTGTGAATTGAAAC,CAGCCACCTACGCGTGGCTGNGAATTGAAAC	32,31,31	4	4	1755209-1755242|1755275-1755309|1755944-1755980|1755275-1755310	NZ_CP017529.1_2649234-2649201|NZ_CP017529.1_1288039-1288073|NZ_CP017529.1_1551063-1551099|NZ_CP017529.1_1288039-1288074	NA:NA:NA	15,15,16	16	TypeI-U?,TypeI-C,TypeI-U	PD-DExK,cas3,DEDDh,WYL,DinG,c2c9_V-U4,cas5,cas8c,cas7,cas4,cas1,cas2,RT	NA|154aa|up_8|NZ_CP017529.1_1745729_1746191_+,NA|307aa|up_3|NZ_CP017529.1_1752227_1753148_+,NA|98aa|up_2|NZ_CP017529.1_1753148_1753442_+,NA|98aa|down_2|NZ_CP017529.1_1759831_1760125_-,NA|76aa|down_9|NZ_CP017529.1_1773613_1773841_-	c2c9_V-U4|379aa|up_9|NZ_CP017529.1_1744434_1745571_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|154aa|up_8|NZ_CP017529.1_1745729_1746191_+	NA	cas5|226aa|up_7|NZ_CP017529.1_1748173_1748851_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|594aa|up_6|NZ_CP017529.1_1748872_1750654_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|288aa|up_5|NZ_CP017529.1_1750663_1751527_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|225aa|up_4|NZ_CP017529.1_1751526_1752201_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|307aa|up_3|NZ_CP017529.1_1752227_1753148_+	NA	NA|98aa|up_2|NZ_CP017529.1_1753148_1753442_+	NA	cas1|338aa|up_1|NZ_CP017529.1_1753544_1754558_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP017529.1_1754624_1754918_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|492aa|down_0|NZ_CP017529.1_1756395_1757871_+	PRK11712, PRK11712, ribonuclease G; Provisional	NA|501aa|down_1|NZ_CP017529.1_1758024_1759527_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|98aa|down_2|NZ_CP017529.1_1759831_1760125_-	NA	NA|2353aa|down_3|NZ_CP017529.1_1760247_1767306_-	COG4733, COG4733, Phage-related protein, tail component [Function unknown]	NA|210aa|down_4|NZ_CP017529.1_1767315_1767945_-	COG4723, COG4723, Phage-related protein, tail component [Function unknown]	NA|244aa|down_5|NZ_CP017529.1_1768213_1768945_-	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains	NA|239aa|down_6|NZ_CP017529.1_1768948_1769665_-	COG4672, gp18, Phage-related protein [Function unknown]	NA|110aa|down_7|NZ_CP017529.1_1769664_1769994_-	pfam05939, Phage_min_tail, Phage minor tail protein	NA|1189aa|down_8|NZ_CP017529.1_1769993_1773560_-	TIGR01541, tail_length_tape, phage tail tape measure protein, lambda family	NA|76aa|down_9|NZ_CP017529.1_1773613_1773841_-	NA
