assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007990425.1_ASM799042v1	NZ_AP019840	Leptotrichia trevisanii strain JMUB3935	1	1354470-1355032	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas10,csx10gr5,csm3gr7,cas6	csa3,PD-DExK,DinG,DEDDh,RT,cas3,WYL,cas10,csx10gr5,csm3gr7,cas6,cas2,cas4,csx20,csx1	Type III-A,Type III-D,Type III-C,Type III-B	GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC,GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC,GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAACAT	37,37,39	0	0	NA	NA	I-B:I-B:I-B	6,7,7	7	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	csa3,PD-DExK,DinG,DEDDh,RT,cas3,WYL,cas10,csx10gr5,csm3gr7,cas6,cas2,cas4,csx20,csx1	NA|55aa|up_0|NZ_AP019840.1_1353963_1354128_+,NA	NA|244aa|up_9|NZ_AP019840.1_1344215_1344947_+	pfam03883, H2O2_YaaD, Peroxide stress protein YaaA	NA|346aa|up_8|NZ_AP019840.1_1345091_1346129_+	PHA02569, 39, DNA topoisomerase II large subunit; Provisional	NA|605aa|up_7|NZ_AP019840.1_1346152_1347967_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|281aa|up_6|NZ_AP019840.1_1348057_1348900_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|233aa|up_5|NZ_AP019840.1_1348942_1349641_-	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|316aa|up_4|NZ_AP019840.1_1349692_1350640_-	cd01018, ZntC, Metal binding protein ZntC	NA|119aa|up_3|NZ_AP019840.1_1350680_1351037_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|531aa|up_2|NZ_AP019840.1_1351301_1352894_+	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional	NA|298aa|up_1|NZ_AP019840.1_1353025_1353919_+	PRK01212, PRK01212, homoserine kinase; Provisional	NA|55aa|up_0|NZ_AP019840.1_1353963_1354128_+	NA	NA|163aa|down_0|NZ_AP019840.1_1355183_1355672_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|398aa|down_1|NZ_AP019840.1_1355671_1356865_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|174aa|down_2|NZ_AP019840.1_1356986_1357508_+	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription]	NA|1026aa|down_3|NZ_AP019840.1_1357504_1360582_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|123aa|down_4|NZ_AP019840.1_1360604_1360973_+	pfam02033, RBFA, Ribosome-binding factor A	NA|566aa|down_5|NZ_AP019840.1_1361066_1362764_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|429aa|down_6|NZ_AP019840.1_1362821_1364108_+	PRK01490, tig, trigger factor; Provisional	NA|192aa|down_7|NZ_AP019840.1_1364418_1364994_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|410aa|down_8|NZ_AP019840.1_1365325_1366555_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|789aa|down_9|NZ_AP019840.1_1366622_1368989_+	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
GCF_007990425.1_ASM799042v1	NZ_AP019840	Leptotrichia trevisanii strain JMUB3935	2	1687170-1687578	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas4,cas2,csx20,csx1	csa3,PD-DExK,DinG,DEDDh,RT,cas3,WYL,cas10,csx10gr5,csm3gr7,cas6,cas2,cas4,csx20,csx1	Unclear	GTTTCAATCCTTGTTTTAATGGATATACTACTTTTAC,GTTTCAATCCTTGTTTTAATGGATATACTACTTTTAC,GTAAAAGTAGTATATCCATTAAAACAAGGATTGAAAC	37,37,37	0	0	NA	NA	I-B:I-B:I-B	5,5,4	5	Unclear	csa3,PD-DExK,DinG,DEDDh,RT,cas3,WYL,cas10,csx10gr5,csm3gr7,cas6,cas2,cas4,csx20,csx1	csx20|128aa|up_7|NZ_AP019840.1_1679548_1679932_-,NA|634aa|up_6|NZ_AP019840.1_1679952_1681854_-,NA|74aa|up_4|NZ_AP019840.1_1683572_1683794_-,NA|61aa|up_0|NZ_AP019840.1_1686470_1686653_-,NA|336aa|down_4|NZ_AP019840.1_1690740_1691748_-,NA|211aa|down_5|NZ_AP019840.1_1691789_1692422_-	cas4|208aa|up_9|NZ_AP019840.1_1676773_1677397_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas2|97aa|up_8|NZ_AP019840.1_1677411_1677702_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	csx20|128aa|up_7|NZ_AP019840.1_1679548_1679932_-	NA	NA|634aa|up_6|NZ_AP019840.1_1679952_1681854_-	NA	csx1|450aa|up_5|NZ_AP019840.1_1682044_1683394_-	TIGR02221, CRISPR-associated_protein_Csx1_2, CRISPR-associated protein, TM1812 family	NA|74aa|up_4|NZ_AP019840.1_1683572_1683794_-	NA	NA|77aa|up_3|NZ_AP019840.1_1683963_1684194_-	PHA03231, PHA03231, glycoprotein BALF4; Provisional	NA|231aa|up_2|NZ_AP019840.1_1684468_1685161_-	COG3596, COG3596, Predicted GTPase [General function prediction only]	NA|99aa|up_1|NZ_AP019840.1_1685317_1685614_-	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme	NA|61aa|up_0|NZ_AP019840.1_1686470_1686653_-	NA	NA|336aa|down_0|NZ_AP019840.1_1687885_1688893_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|98aa|down_1|NZ_AP019840.1_1688971_1689265_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|97aa|down_2|NZ_AP019840.1_1689254_1689545_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|315aa|down_3|NZ_AP019840.1_1689620_1690565_-	pfam07751, Abi_2, Abi-like protein	NA|336aa|down_4|NZ_AP019840.1_1690740_1691748_-	NA	NA|211aa|down_5|NZ_AP019840.1_1691789_1692422_-	NA	NA|700aa|down_6|NZ_AP019840.1_1692488_1694588_-	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|124aa|down_7|NZ_AP019840.1_1695282_1695654_-	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|80aa|down_8|NZ_AP019840.1_1695830_1696070_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|1170aa|down_9|NZ_AP019840.1_1696436_1699946_+	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase
GCF_007990425.1_ASM799042v1	NZ_AP019840	Leptotrichia trevisanii strain JMUB3935	3	2639234-2639338	3	CRISPRCasFinder	no		csa3,PD-DExK,DinG,DEDDh,RT,cas3,WYL,cas10,csx10gr5,csm3gr7,cas6,cas2,cas4,csx20,csx1	Orphan	TGGTTCTCTTTTCACATATACAAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,PD-DExK,DinG,DEDDh,RT,cas3,WYL,cas10,csx10gr5,csm3gr7,cas6,cas2,cas4,csx20,csx1	NA|261aa|up_5|NZ_AP019840.1_2634581_2635364_+,NA|73aa|up_4|NZ_AP019840.1_2635441_2635660_+,NA|242aa|down_3|NZ_AP019840.1_2644330_2645056_+	NA|318aa|up_9|NZ_AP019840.1_2628693_2629647_+	pfam13177, DNA_pol3_delta2, DNA polymerase III, delta subunit	NA|287aa|up_8|NZ_AP019840.1_2630594_2631455_-	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|273aa|up_7|NZ_AP019840.1_2631534_2632353_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|510aa|up_6|NZ_AP019840.1_2633051_2634581_+	pfam00350, Dynamin_N, Dynamin family	NA|261aa|up_5|NZ_AP019840.1_2634581_2635364_+	NA	NA|73aa|up_4|NZ_AP019840.1_2635441_2635660_+	NA	NA|283aa|up_3|NZ_AP019840.1_2635743_2636592_-	cd13694, PBP2_Cysteine, Substrate binding domain of ABC cysteine transporter; the type 2 periplasmic binding protein fold	NA|254aa|up_2|NZ_AP019840.1_2636649_2637411_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|226aa|up_1|NZ_AP019840.1_2637468_2638146_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|220aa|up_0|NZ_AP019840.1_2638126_2638786_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|597aa|down_0|NZ_AP019840.1_2639736_2641527_+	TIGR01530, Probable_5'-nucleotidase, NAD pyrophosphatase/5'-nucleotidase NadN	NA|123aa|down_1|NZ_AP019840.1_2641978_2642347_+	cd11536, NTP-PPase_iMazG, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|552aa|down_2|NZ_AP019840.1_2642464_2644120_+	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|242aa|down_3|NZ_AP019840.1_2644330_2645056_+	NA	NA|437aa|down_4|NZ_AP019840.1_2645282_2646593_+	PRK00077, eno, enolase; Provisional	NA|136aa|down_5|NZ_AP019840.1_2646756_2647164_+	pfam09403, FadA, Adhesion protein FadA	NA|138aa|down_6|NZ_AP019840.1_2647244_2647658_+	pfam09403, FadA, Adhesion protein FadA	NA|297aa|down_7|NZ_AP019840.1_2647986_2648877_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|263aa|down_8|NZ_AP019840.1_2648976_2649765_+	pfam03724, META, META domain	NA|216aa|down_9|NZ_AP019840.1_2649964_2650612_+	PRK10838, spr, bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase
