assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007990525.1_ASM799052v1	NZ_AP019823	Leptotrichia hofstadii strain JCM16775	1	217237-217500	1,1,1	CRISPRCasFinder,PILER-CR,CRT	no		csa3,WYL,DinG,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csm6,cas1,cas2,cas3	Orphan	ATGGTTAAAATAGAGTATCCATTAAAACAAGGATTGAAACAA,GGTTAAAATAGAGTATCCATTAAAACAAGGATTGAAACAA,GGTTAAAATAGAGTATCCATTAAAACAAGGATTGAAACA	42,40,39	0	0	NA	NA	I-B:I-B:I-B	3,2,3	3	Orphan	csa3,WYL,DinG,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csm6,cas1,cas2,cas3	NA|104aa|up_0|NZ_AP019823.1_216622_216934_+,NA|294aa|down_1|NZ_AP019823.1_218763_219645_+,NA|386aa|down_2|NZ_AP019823.1_219660_220818_+	NA|96aa|up_9|NZ_AP019823.1_207914_208202_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|348aa|up_8|NZ_AP019823.1_208508_209552_+	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|341aa|up_7|NZ_AP019823.1_209599_210622_+	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|275aa|up_6|NZ_AP019823.1_210791_211616_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|271aa|up_5|NZ_AP019823.1_211644_212457_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|121aa|up_4|NZ_AP019823.1_212574_212937_-	cd17542, REC_CheY, phosphoacceptor receiver (REC) domain of chemotaxis protein CheY	NA|269aa|up_3|NZ_AP019823.1_212979_213786_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|159aa|up_2|NZ_AP019823.1_213918_214395_+	pfam14595, Thioredoxin_9, Thioredoxin	NA|610aa|up_1|NZ_AP019823.1_214744_216574_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|104aa|up_0|NZ_AP019823.1_216622_216934_+	NA	NA|255aa|down_0|NZ_AP019823.1_217866_218631_+	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|294aa|down_1|NZ_AP019823.1_218763_219645_+	NA	NA|386aa|down_2|NZ_AP019823.1_219660_220818_+	NA	NA|197aa|down_3|NZ_AP019823.1_221015_221606_+	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|120aa|down_4|NZ_AP019823.1_222257_222617_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|395aa|down_5|NZ_AP019823.1_222849_224034_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|573aa|down_6|NZ_AP019823.1_224333_226052_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|464aa|down_7|NZ_AP019823.1_226208_227600_+	COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]	NA|228aa|down_8|NZ_AP019823.1_227709_228393_+	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins	NA|174aa|down_9|NZ_AP019823.1_228425_228947_+	pfam04472, SepF, Cell division protein SepF
GCF_007990525.1_ASM799052v1	NZ_AP019823	Leptotrichia hofstadii strain JCM16775	2	625077-625258	2	PILER-CR	no		csa3,WYL,DinG,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csm6,cas1,cas2,cas3	Orphan	TACGGAAAAAGAAAAATCGGCAGGAATTTATGGAG	35	0	0	NA	NA	NA	2	2	Orphan	csa3,WYL,DinG,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csm6,cas1,cas2,cas3	NA|51aa|up_8|NZ_AP019823.1_615165_615318_+,NA|61aa|up_7|NZ_AP019823.1_615657_615840_+,NA|137aa|up_6|NZ_AP019823.1_615839_616250_+,NA|136aa|up_5|NZ_AP019823.1_616261_616669_+,NA|126aa|down_1|NZ_AP019823.1_636596_636974_+,NA|256aa|down_7|NZ_AP019823.1_642487_643255_+	NA|328aa|up_9|NZ_AP019823.1_614011_614995_+	TIGR01128, DNA_polymerase_III_subunit_delta, DNA polymerase III, delta subunit	NA|51aa|up_8|NZ_AP019823.1_615165_615318_+	NA	NA|61aa|up_7|NZ_AP019823.1_615657_615840_+	NA	NA|137aa|up_6|NZ_AP019823.1_615839_616250_+	NA	NA|136aa|up_5|NZ_AP019823.1_616261_616669_+	NA	NA|201aa|up_4|NZ_AP019823.1_616941_617544_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|180aa|up_3|NZ_AP019823.1_617761_618301_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|210aa|up_2|NZ_AP019823.1_618311_618941_+	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|89aa|up_1|NZ_AP019823.1_619040_619307_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|512aa|up_0|NZ_AP019823.1_619912_621448_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|1126aa|down_0|NZ_AP019823.1_633168_636546_+	pfam13569, DUF4132, Domain of unknown function (DUF4132)	NA|126aa|down_1|NZ_AP019823.1_636596_636974_+	NA	NA|326aa|down_2|NZ_AP019823.1_637010_637988_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|561aa|down_3|NZ_AP019823.1_638008_639691_+	cd01031, EriC, ClC chloride channel EriC	NA|504aa|down_4|NZ_AP019823.1_639762_641274_-	PRK00047, glpK, glycerol kinase GlpK	NA|88aa|down_5|NZ_AP019823.1_641408_641672_+	pfam03083, MtN3_slv, Sugar efflux transporter for intercellular exchange	NA|211aa|down_6|NZ_AP019823.1_641810_642443_+	cd11644, Precorrin-6Y-MT, Precorrin-6Y methyltransferase (also named CbiE)	NA|256aa|down_7|NZ_AP019823.1_642487_643255_+	NA	NA|185aa|down_8|NZ_AP019823.1_643348_643903_+	pfam03602, Cons_hypoth95, Conserved hypothetical protein 95	NA|72aa|down_9|NZ_AP019823.1_643940_644156_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional
GCF_007990525.1_ASM799052v1	NZ_AP019823	Leptotrichia hofstadii strain JCM16775	3	1370812-1371066	3,2	PILER-CR,CRT	no	cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csm6,cas1,cas2	csa3,WYL,DinG,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csm6,cas1,cas2,cas3	Type III-A,Type III-B,Type III-C,Type III-D	ATATAAAAAAGGATAGAACTCCGAAAGGAGACGGAA,ATATAAAAAAGGATAGAACTCCGAAAGGAGACGGAA	36,36	0	0	NA	NA	NA:NA	2,3	3	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	csa3,WYL,DinG,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csm6,cas1,cas2,cas3	NA,NA|285aa|down_1|NZ_AP019823.1_1371952_1372807_+,NA|484aa|down_9|NZ_AP019823.1_1378573_1380025_+	NA|551aa|up_9|NZ_AP019823.1_1359269_1360922_+	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	cas10|895aa|up_8|NZ_AP019823.1_1361011_1363696_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|135aa|up_7|NZ_AP019823.1_1363697_1364102_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|241aa|up_6|NZ_AP019823.1_1364139_1364862_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|338aa|up_5|NZ_AP019823.1_1364871_1365885_+	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm5gr7|405aa|up_4|NZ_AP019823.1_1365868_1367083_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	cas6|241aa|up_3|NZ_AP019823.1_1367084_1367807_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm6|473aa|up_2|NZ_AP019823.1_1367814_1369233_+	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6)	cas1|336aa|up_1|NZ_AP019823.1_1369329_1370337_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|108aa|up_0|NZ_AP019823.1_1370352_1370676_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	NA|210aa|down_0|NZ_AP019823.1_1371240_1371870_+	PRK13141, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|285aa|down_1|NZ_AP019823.1_1371952_1372807_+	NA	NA|239aa|down_2|NZ_AP019823.1_1372988_1373705_+	PRK00748, PRK00748, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated	NA|252aa|down_3|NZ_AP019823.1_1373774_1374530_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|111aa|down_4|NZ_AP019823.1_1374597_1374930_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|86aa|down_5|NZ_AP019823.1_1374919_1375177_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|218aa|down_6|NZ_AP019823.1_1375793_1376447_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|268aa|down_7|NZ_AP019823.1_1376547_1377351_+	pfam10086, DUF2324, Putative membrane peptidase family (DUF2324)	NA|284aa|down_8|NZ_AP019823.1_1377465_1378317_+	cd12110, PHP_HisPPase_Hisj_like, Polymerase and Histidinol Phosphatase domain of Histidinol phosphate phosphatase of Hisj like	NA|484aa|down_9|NZ_AP019823.1_1378573_1380025_+	NA
GCF_007990525.1_ASM799052v1	NZ_AP019823	Leptotrichia hofstadii strain JCM16775	4	1679778-1679886	2	CRISPRCasFinder	no		csa3,WYL,DinG,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csm6,cas1,cas2,cas3	Orphan	GTGGTGTTTTAGTCCCCTTCAATATTGGGGTGGTCTATATC	41	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DinG,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csm6,cas1,cas2,cas3	NA|162aa|up_9|NZ_AP019823.1_1669823_1670309_-,NA|339aa|down_1|NZ_AP019823.1_1681766_1682783_+,NA|264aa|down_2|NZ_AP019823.1_1682813_1683605_+,NA|268aa|down_5|NZ_AP019823.1_1686010_1686814_-,NA|102aa|down_6|NZ_AP019823.1_1686882_1687188_-,NA|60aa|down_8|NZ_AP019823.1_1688715_1688895_+,NA|60aa|down_9|NZ_AP019823.1_1689022_1689202_+	NA|162aa|up_9|NZ_AP019823.1_1669823_1670309_-	NA	NA|379aa|up_8|NZ_AP019823.1_1670358_1671495_-	sd00006, TPR, Tetratricopeptide repeat	NA|390aa|up_7|NZ_AP019823.1_1671499_1672669_-	sd00006, TPR, Tetratricopeptide repeat	NA|92aa|up_6|NZ_AP019823.1_1672774_1673050_-	TIGR02116, Hypothetical_protein_Rv3358/MT3466/Mb3393	NA|80aa|up_5|NZ_AP019823.1_1673043_1673283_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|392aa|up_4|NZ_AP019823.1_1673355_1674531_-	pfam13308, YARHG, YARHG domain	NA|458aa|up_3|NZ_AP019823.1_1674783_1676157_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|457aa|up_2|NZ_AP019823.1_1676309_1677680_-	pfam13644, DKNYY, DKNYY family	NA|336aa|up_1|NZ_AP019823.1_1677717_1678725_-	pfam13644, DKNYY, DKNYY family	NA|67aa|up_0|NZ_AP019823.1_1679475_1679676_-	smart00894, Excalibur, Excalibur calcium-binding domain	NA|507aa|down_0|NZ_AP019823.1_1680017_1681538_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|339aa|down_1|NZ_AP019823.1_1681766_1682783_+	NA	NA|264aa|down_2|NZ_AP019823.1_1682813_1683605_+	NA	NA|228aa|down_3|NZ_AP019823.1_1683644_1684328_+	pfam03729, DUF308, Short repeat of unknown function (DUF308)	NA|410aa|down_4|NZ_AP019823.1_1684415_1685645_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|268aa|down_5|NZ_AP019823.1_1686010_1686814_-	NA	NA|102aa|down_6|NZ_AP019823.1_1686882_1687188_-	NA	NA|166aa|down_7|NZ_AP019823.1_1688038_1688536_+	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional	NA|60aa|down_8|NZ_AP019823.1_1688715_1688895_+	NA	NA|60aa|down_9|NZ_AP019823.1_1689022_1689202_+	NA
GCF_007990525.1_ASM799052v1	NZ_AP019823	Leptotrichia hofstadii strain JCM16775	5	2133115-2133742	3,3,4	CRISPRCasFinder,CRT,PILER-CR	no		csa3,WYL,DinG,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csm6,cas1,cas2,cas3	Orphan	GTTTCAATCCTTGTTTTAATGGATTCACTATTCTTAC,GTNTCAATCCTTGTTNTAATGGATTCACTATTCTTAC,GTAAGAATAGTGAATCCATTAAAACAAGGATTGAAAC	37,37,37	0	0	NA	NA	I-B:I-B:I-B	8,8,8	8	Orphan	csa3,WYL,DinG,DEDDh,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csm6,cas1,cas2,cas3	NA,NA	NA|406aa|up_9|NZ_AP019823.1_2118146_2119364_-	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|780aa|up_8|NZ_AP019823.1_2119394_2121734_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|934aa|up_7|NZ_AP019823.1_2122488_2125290_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|190aa|up_6|NZ_AP019823.1_2125450_2126020_+	COG3212, COG3212, Predicted membrane protein [Function unknown]	NA|106aa|up_5|NZ_AP019823.1_2126094_2126412_+	COG3212, COG3212, Predicted membrane protein [Function unknown]	NA|224aa|up_4|NZ_AP019823.1_2126534_2127206_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|451aa|up_3|NZ_AP019823.1_2127259_2128612_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|876aa|up_2|NZ_AP019823.1_2128683_2131311_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|193aa|up_1|NZ_AP019823.1_2131607_2132186_-	COG0212, COG0212, 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]	NA|197aa|up_0|NZ_AP019823.1_2132447_2133038_-	PRK05800, cobU, adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated	NA|663aa|down_0|NZ_AP019823.1_2134222_2136211_-	PRK12740, PRK12740, elongation factor G-like protein EF-G2	NA|414aa|down_1|NZ_AP019823.1_2136474_2137716_+	pfam12138, Spherulin4, Spherulation-specific family 4	NA|147aa|down_2|NZ_AP019823.1_2137771_2138212_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|402aa|down_3|NZ_AP019823.1_2138406_2139612_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|376aa|down_4|NZ_AP019823.1_2139697_2140825_-	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|471aa|down_5|NZ_AP019823.1_2140861_2142274_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|249aa|down_6|NZ_AP019823.1_2142302_2143049_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|297aa|down_7|NZ_AP019823.1_2143290_2144181_-	pfam15575, Imm49, Immunity protein 49	NA|271aa|down_8|NZ_AP019823.1_2144820_2145633_-	PRK12412, PRK12412, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA|292aa|down_9|NZ_AP019823.1_2145772_2146648_-	TIGR00676, 510-methylenetetrahydrofolate_reductase
