assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007998005.1_ASM799800v1	NZ_CP042606	Escherichia coli strain NCYU-29-19 chromosome, complete genome	1	1852803-1852947	1	CRISPRCasFinder	no		csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	NA|28aa|up_2|NZ_CP042606.1_1850675_1850759_+,NA	NA|472aa|up_9|NZ_CP042606.1_1843475_1844891_+	PRK10518, PRK10518, alkaline phosphatase; Provisional	NA|270aa|up_8|NZ_CP042606.1_1846563_1847373_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|155aa|up_7|NZ_CP042606.1_1847492_1847957_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP042606.1_1848133_1848658_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP042606.1_1848707_1848899_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP042606.1_1849156_1849834_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP042606.1_1849905_1850190_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP042606.1_1850675_1850759_+	NA	NA|304aa|up_1|NZ_CP042606.1_1850836_1851748_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|117aa|up_0|NZ_CP042606.1_1851746_1852097_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP042606.1_1853023_1854208_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|401aa|down_1|NZ_CP042606.1_1857473_1858676_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_2|NZ_CP042606.1_1858866_1859556_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|440aa|down_3|NZ_CP042606.1_1861316_1862636_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_4|NZ_CP042606.1_1862711_1864085_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|194aa|down_5|NZ_CP042606.1_1866060_1866642_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_6|NZ_CP042606.1_1866734_1867805_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|376aa|down_7|NZ_CP042606.1_1867860_1868988_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|111aa|down_8|NZ_CP042606.1_1869010_1869343_+	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|324aa|down_9|NZ_CP042606.1_1871226_1872198_+	PRK13022, secF, protein translocase subunit SecF
GCF_007998005.1_ASM799800v1	NZ_CP042606	Escherichia coli strain NCYU-29-19 chromosome, complete genome	2	2218002-2218143	2	CRISPRCasFinder	no		csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	Orphan	GCATTCGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACC	49	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	NA,NA|56aa|down_3|NZ_CP042606.1_2220935_2221103_-,NA|94aa|down_4|NZ_CP042606.1_2221191_2221473_-,NA|94aa|down_7|NZ_CP042606.1_2222529_2222811_-	NA|314aa|up_9|NZ_CP042606.1_2196098_2197040_-	PRK03557, PRK03557, CDF family zinc transporter ZitB	NA|351aa|up_8|NZ_CP042606.1_2197849_2198902_+	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated	NA|251aa|up_7|NZ_CP042606.1_2199059_2199812_-	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|347aa|up_6|NZ_CP042606.1_2200014_2201055_-	PRK11055, galM, galactose-1-epimerase; Provisional	NA|491aa|up_5|NZ_CP042606.1_2204532_2206005_-	PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional	NA|263aa|up_4|NZ_CP042606.1_2206072_2206861_-	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional	NA|258aa|up_3|NZ_CP042606.1_2207306_2208080_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_2|NZ_CP042606.1_2208079_2208769_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|318aa|up_1|NZ_CP042606.1_2211838_2212792_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|351aa|up_0|NZ_CP042606.1_2212975_2214028_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|428aa|down_0|NZ_CP042606.1_2218211_2219495_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|357aa|down_1|NZ_CP042606.1_2219629_2220700_-	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|73aa|down_2|NZ_CP042606.1_2220677_2220896_-	pfam07825, Exc, Excisionase-like protein	NA|56aa|down_3|NZ_CP042606.1_2220935_2221103_-	NA	NA|94aa|down_4|NZ_CP042606.1_2221191_2221473_-	NA	NA|183aa|down_5|NZ_CP042606.1_2221664_2222213_-	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|74aa|down_6|NZ_CP042606.1_2222209_2222431_-	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|94aa|down_7|NZ_CP042606.1_2222529_2222811_-	NA	NA|64aa|down_8|NZ_CP042606.1_2222821_2223013_-	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|61aa|down_9|NZ_CP042606.1_2222985_2223168_-	pfam07026, DUF1317, Protein of unknown function (DUF1317)
GCF_007998005.1_ASM799800v1	NZ_CP042606	Escherichia coli strain NCYU-29-19 chromosome, complete genome	3	2360168-2360372	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	2,3,3	3	Orphan	csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	NA,NA|78aa|down_9|NZ_CP042606.1_2381758_2381992_+	NA|172aa|up_9|NZ_CP042606.1_2338373_2338889_-	PRK10533, PRK10533, putative lipoprotein; Provisional	NA|108aa|up_8|NZ_CP042606.1_2339015_2339339_+	PRK02877, PRK02877, hypothetical protein; Provisional	NA|277aa|up_7|NZ_CP042606.1_2339335_2340166_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|77aa|up_6|NZ_CP042606.1_2342552_2342783_-	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	NA|573aa|up_5|NZ_CP042606.1_2343754_2345473_-	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|323aa|up_4|NZ_CP042606.1_2345605_2346574_-	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional	NA|232aa|up_3|NZ_CP042606.1_2349770_2350466_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|319aa|up_2|NZ_CP042606.1_2352546_2353503_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_1|NZ_CP042606.1_2353653_2354769_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|75aa|up_0|NZ_CP042606.1_2356782_2357007_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|73aa|down_0|NZ_CP042606.1_2360756_2360975_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|574aa|down_1|NZ_CP042606.1_2362006_2363728_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_2|NZ_CP042606.1_2365617_2366583_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_3|NZ_CP042606.1_2367127_2367622_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|204aa|down_4|NZ_CP042606.1_2371902_2372514_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_5|NZ_CP042606.1_2372524_2373868_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|206aa|down_6|NZ_CP042606.1_2377943_2378561_+	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit	NA|209aa|down_7|NZ_CP042606.1_2379459_2380086_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|346aa|down_8|NZ_CP042606.1_2380511_2381549_+	PRK03633, PRK03633, putative MFS family transporter protein; Provisional	NA|78aa|down_9|NZ_CP042606.1_2381758_2381992_+	NA
GCF_007998005.1_ASM799800v1	NZ_CP042606	Escherichia coli strain NCYU-29-19 chromosome, complete genome	4	3774940-3775066	4	CRISPRCasFinder	no		csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	NA,NA	NA|163aa|up_9|NZ_CP042606.1_3732731_3733220_+	COG4574, Eco, Serine protease inhibitor ecotin [General function prediction only]	NA|548aa|up_8|NZ_CP042606.1_3735573_3737217_-	PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional	NA|355aa|up_7|NZ_CP042606.1_3737941_3739006_-	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA|369aa|up_6|NZ_CP042606.1_3740244_3741351_-	PRK10554, PRK10554, outer membrane porin protein C; Provisional	NA|217aa|up_5|NZ_CP042606.1_3744781_3745432_+	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional	NA|462aa|up_4|NZ_CP042606.1_3750467_3751853_+	PRK11361, PRK11361, acetoacetate metabolism transcriptional regulator AtoC	NA|217aa|up_3|NZ_CP042606.1_3752712_3753363_+	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|441aa|up_2|NZ_CP042606.1_3753359_3754682_+	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|259aa|up_1|NZ_CP042606.1_3755969_3756746_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_0|NZ_CP042606.1_3765393_3768021_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|377aa|down_0|NZ_CP042606.1_3775122_3776253_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|217aa|down_1|NZ_CP042606.1_3776561_3777212_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_2|NZ_CP042606.1_3777674_3778751_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|543aa|down_3|NZ_CP042606.1_3780385_3782014_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_4|NZ_CP042606.1_3782003_3783263_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|430aa|down_5|NZ_CP042606.1_3786408_3787698_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|261aa|down_6|NZ_CP042606.1_3788972_3789755_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|181aa|down_7|NZ_CP042606.1_3791277_3791820_-	pfam07437, YfaZ, YfaZ precursor	NA|142aa|down_8|NZ_CP042606.1_3792097_3792523_+	PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional	NA|205aa|down_9|NZ_CP042606.1_3793326_3793941_-	PRK15416, PRK15416, lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
GCF_007998005.1_ASM799800v1	NZ_CP042606	Escherichia coli strain NCYU-29-19 chromosome, complete genome	5	4222900-4223044	5	CRISPRCasFinder	no		csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	Orphan	CACAATGCCTGATGCGACGCTGGAGCGTCTTATCATGCCTACAAA	45	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	NA,NA	NA|221aa|up_9|NZ_CP042606.1_4210405_4211068_+	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|150aa|up_8|NZ_CP042606.1_4211068_4211518_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|53aa|up_7|NZ_CP042606.1_4211601_4211760_-	COG0401, COG0401, Uncharacterized homolog of Blt101 [Function unknown]	NA|175aa|up_6|NZ_CP042606.1_4212252_4212777_+	cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily	NA|115aa|up_5|NZ_CP042606.1_4214380_4214725_-	PRK10556, PRK10556, hypothetical protein; Provisional	NA|110aa|up_4|NZ_CP042606.1_4214876_4215206_+	PRK10132, PRK10132, hypothetical protein; Provisional	NA|82aa|up_3|NZ_CP042606.1_4215453_4215699_+	PRK10329, PRK10329, glutaredoxin-like protein NrdH	NA|137aa|up_2|NZ_CP042606.1_4215695_4216106_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|320aa|up_1|NZ_CP042606.1_4218231_4219191_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|401aa|up_0|NZ_CP042606.1_4219544_4220747_+	PRK10070, PRK10070, proline/glycine betaine ABC transporter ATP-binding protein ProV	NA|246aa|down_0|NZ_CP042606.1_4224451_4225189_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|112aa|down_1|NZ_CP042606.1_4225178_4225514_+	PRK10408, PRK10408, L-valine transporter subunit YgaH	NA|177aa|down_2|NZ_CP042606.1_4225604_4226135_+	PRK10870, PRK10870, transcriptional repressor MprA; Provisional	NA|188aa|down_3|NZ_CP042606.1_4229005_4229569_-	PRK02260, PRK02260, S-ribosylhomocysteine lyase	NA|519aa|down_4|NZ_CP042606.1_4229718_4231275_-	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional	NA|167aa|down_5|NZ_CP042606.1_4236837_4237338_-	PRK00117, recX, recombination regulator RecX; Reviewed	NA|166aa|down_6|NZ_CP042606.1_4238546_4239044_-	PRK03661, PRK03661, nicotinamide-nucleotide amidase	NA|188aa|down_7|NZ_CP042606.1_4240528_4241092_+	TIGR00821, Glucitol/sorbitol_permease_IIC_component, PTS system, glucitol/sorbitol-specific, IIC component	NA|320aa|down_8|NZ_CP042606.1_4241088_4242048_+	TIGR00825, EIIBC-GUT, PTS system, glucitol/sorbitol-specific, IIBC component	NA|124aa|down_9|NZ_CP042606.1_4242058_4242430_+	PRK10377, PRK10377, PTS glucitol/sorbitol transporter subunit IIA
GCF_007998005.1_ASM799800v1	NZ_CP042606	Escherichia coli strain NCYU-29-19 chromosome, complete genome	6	4292329-4293456	6,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cse2gr11	csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	18,18,16	18	TypeI-E	csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	NA,NA	NA|94aa|up_9|NZ_CP042606.1_4278010_4278292_+	COG3395, COG3395, Uncharacterized protein conserved in bacteria [Function unknown]	NA|213aa|up_8|NZ_CP042606.1_4278288_4278927_+	PRK08130, PRK08130, putative aldolase; Validated	NA|259aa|up_7|NZ_CP042606.1_4278931_4279708_+	PRK09989, PRK09989, HPr family phosphocarrier protein	NA|455aa|up_6|NZ_CP042606.1_4279796_4281161_+	PRK09821, PRK09821, putative transporter; Provisional	NA|331aa|up_5|NZ_CP042606.1_4281254_4282247_-	PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated	NA|254aa|up_4|NZ_CP042606.1_4284206_4284968_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|160aa|up_3|NZ_CP042606.1_4285993_4286473_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|202aa|up_2|NZ_CP042606.1_4288077_4288683_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_1|NZ_CP042606.1_4288682_4290110_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|346aa|up_0|NZ_CP042606.1_4291270_4292308_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP042606.1_4293561_4293846_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP042606.1_4293847_4294765_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP042606.1_4294780_4295380_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	NA|388aa|down_3|NZ_CP042606.1_4295795_4296958_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cse2gr11|161aa|down_4|NZ_CP042606.1_4298406_4298889_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|245aa|down_5|NZ_CP042606.1_4303829_4304564_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|600aa|down_6|NZ_CP042606.1_4306351_4308151_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|down_7|NZ_CP042606.1_4308466_4308832_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|87aa|down_8|NZ_CP042606.1_4310171_4310432_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|down_9|NZ_CP042606.1_4310448_4311024_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
GCF_007998005.1_ASM799800v1	NZ_CP042606	Escherichia coli strain NCYU-29-19 chromosome, complete genome	7	4320267-4320968	7,3,3	CRISPRCasFinder,CRT,PILER-CR	no		csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,GGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,28	2	2	4320784-4320815|4320784-4320816	NZ_CP042606.1_2387374-2387343|NZ_CP042606.1_2387374-2387342	I-E:I-E:I-E	11,11,11	11	Orphan	csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	NA,NA|47aa|down_1|NZ_CP042606.1_4324199_4324340_+	cse2gr11|161aa|up_9|NZ_CP042606.1_4298406_4298889_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|245aa|up_8|NZ_CP042606.1_4303829_4304564_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|600aa|up_7|NZ_CP042606.1_4306351_4308151_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_6|NZ_CP042606.1_4308466_4308832_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|87aa|up_5|NZ_CP042606.1_4310171_4310432_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_4|NZ_CP042606.1_4310448_4311024_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_3|NZ_CP042606.1_4311171_4312032_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_2|NZ_CP042606.1_4312028_4312808_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_1|NZ_CP042606.1_4314216_4315671_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_0|NZ_CP042606.1_4315740_4316526_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|224aa|down_0|NZ_CP042606.1_4323389_4324061_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP042606.1_4324199_4324340_+	NA	NA|316aa|down_2|NZ_CP042606.1_4324353_4325301_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|264aa|down_3|NZ_CP042606.1_4328539_4329331_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_4|NZ_CP042606.1_4329401_4329737_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_5|NZ_CP042606.1_4329736_4329985_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|434aa|down_6|NZ_CP042606.1_4332343_4333645_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|447aa|down_7|NZ_CP042606.1_4336687_4338028_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|106aa|down_8|NZ_CP042606.1_4339061_4339379_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|150aa|down_9|NZ_CP042606.1_4341166_4341616_-	PRK08105, PRK08105, flavodoxin; Provisional
GCF_007998005.1_ASM799800v1	NZ_CP042606	Escherichia coli strain NCYU-29-19 chromosome, complete genome	8	4322350-4323051	4,8,4	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,NCGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,30	0	0	NA	NA	I-E:I-E:I-E	11,11,11	11	Orphan	csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	NA,NA|47aa|down_1|NZ_CP042606.1_4324199_4324340_+	cse2gr11|161aa|up_9|NZ_CP042606.1_4298406_4298889_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	NA|245aa|up_8|NZ_CP042606.1_4303829_4304564_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|600aa|up_7|NZ_CP042606.1_4306351_4308151_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_6|NZ_CP042606.1_4308466_4308832_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|87aa|up_5|NZ_CP042606.1_4310171_4310432_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_4|NZ_CP042606.1_4310448_4311024_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_3|NZ_CP042606.1_4311171_4312032_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_2|NZ_CP042606.1_4312028_4312808_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_1|NZ_CP042606.1_4314216_4315671_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_0|NZ_CP042606.1_4315740_4316526_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|224aa|down_0|NZ_CP042606.1_4323389_4324061_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP042606.1_4324199_4324340_+	NA	NA|316aa|down_2|NZ_CP042606.1_4324353_4325301_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|264aa|down_3|NZ_CP042606.1_4328539_4329331_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_4|NZ_CP042606.1_4329401_4329737_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_5|NZ_CP042606.1_4329736_4329985_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|434aa|down_6|NZ_CP042606.1_4332343_4333645_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|447aa|down_7|NZ_CP042606.1_4336687_4338028_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|106aa|down_8|NZ_CP042606.1_4339061_4339379_-	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|150aa|down_9|NZ_CP042606.1_4341166_4341616_-	PRK08105, PRK08105, flavodoxin; Provisional
GCF_007998005.1_ASM799800v1	NZ_CP042608	Escherichia coli strain NCYU-29-19 plasmid pNCYU-29-19-2_MCR3, complete sequence	1	7128-7247	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATGGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,RT,WYL,cas3,cas2,cas1,cas6e,cse2gr11	NA,NA|77aa|down_0|NZ_CP042608.1_7330_7561_-,NA|119aa|down_2|NZ_CP042608.1_8962_9319_+,NA|54aa|down_3|NZ_CP042608.1_10316_10478_-,NA|28aa|down_4|NZ_CP042608.1_12543_12627_-,NA|95aa|down_6|NZ_CP042608.1_16873_17158_-,NA|62aa|down_7|NZ_CP042608.1_17206_17392_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|274aa|up_3|NZ_CP042608.1_1840_2662_+	pfam00665, rve, Integrase core domain	NA|127aa|up_2|NZ_CP042608.1_4490_4871_+	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase	NA|94aa|up_1|NZ_CP042608.1_5742_6024_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|84aa|up_0|NZ_CP042608.1_6013_6265_-	PRK02854, PRK02854, primosomal protein DnaT	NA|77aa|down_0|NZ_CP042608.1_7330_7561_-	NA	NA|279aa|down_1|NZ_CP042608.1_7499_8336_+	pfam01051, Rep_3, Initiator Replication protein	NA|119aa|down_2|NZ_CP042608.1_8962_9319_+	NA	NA|54aa|down_3|NZ_CP042608.1_10316_10478_-	NA	NA|28aa|down_4|NZ_CP042608.1_12543_12627_-	NA	NA|219aa|down_5|NZ_CP042608.1_16289_16946_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|95aa|down_6|NZ_CP042608.1_16873_17158_-	NA	NA|62aa|down_7|NZ_CP042608.1_17206_17392_+	NA	NA|94aa|down_8|NZ_CP042608.1_17611_17893_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|275aa|down_9|NZ_CP042608.1_18976_19801_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain
