The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	0	3014	2601809	integrase	Streptococcus_phage(66.67%)	4	810:822	3040:3052
WP_002332471.1|355_616_-	hypothetical protein	NA	E8ZDN3	Streptococcus_phage	54.9	2.5e-14
WP_147586755.1|772_1480_+	helix-turn-helix domain-containing protein	NA	E8ZDN4	Streptococcus_phage	43.0	1.3e-39
810:822	attL	AATTAAATTTAAG	NA	NA	NA	NA
WP_002306332.1|1554_1761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_147586756.1|1871_3014_+|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	42.6	8.4e-70
3040:3052	attR	AATTAAATTTAAG	NA	NA	NA	NA
>prophage 2
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	19661	22612	2601809		Staphylococcus_phage(33.33%)	4	NA	NA
WP_002329437.1|19661_20564_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.4	5.5e-32
WP_002335946.1|20563_20764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002329439.1|20765_21878_-	helix-turn-helix transcriptional regulator	NA	A0A1B1P888	Bacillus_phage	37.1	7.6e-07
WP_002290264.1|22057_22612_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	28.7	3.9e-12
>prophage 3
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	26281	32939	2601809		Bacillus_phage(66.67%)	4	NA	NA
WP_002291606.1|26281_26986_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.8	2.4e-38
WP_002308716.1|26982_28722_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	33.6	1.6e-27
WP_002335948.1|28816_30286_-	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_002335949.1|30470_32939_-	cation-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	28.5	1.2e-44
>prophage 4
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	44111	61034	2601809	tRNA	Streptococcus_phage(33.33%)	14	NA	NA
WP_002335957.1|44111_46298_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	38.7	3.1e-121
WP_002291786.1|46297_46507_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_002291784.1|46519_46960_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA	NA
WP_002329453.1|47033_47573_-	DNA topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	32.2	6.7e-17
WP_002288779.1|48066_49533_-	amino acid permease	NA	NA	NA	NA	NA
WP_147586758.1|49835_51923_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.7	2.9e-116
WP_002288776.1|52446_52806_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_002331530.1|52835_53177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586759.1|53173_53848_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_002291771.1|54774_56073_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.3	9.0e-60
WP_147586760.1|56112_57303_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_002316397.1|57323_57851_-	DUF5590 domain-containg protein	NA	NA	NA	NA	NA
WP_002288763.1|57897_60687_-	DEAD/DEAH box helicase family protein	NA	A0A1X9I5C8	Streptococcus_phage	30.9	1.4e-89
WP_147586761.1|60833_61034_-	cold shock domain-containing protein	NA	Q9AZD3	Lactococcus_phage	74.2	1.5e-22
>prophage 5
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	66551	70296	2601809		Streptococcus_phage(50.0%)	5	NA	NA
WP_002329456.1|66551_67820_-	voltage-gated chloride channel family protein	NA	A0A1X9I5Z9	Streptococcus_phage	31.6	9.8e-43
WP_002340861.1|67982_68630_-	elongation factor G-binding protein	NA	NA	NA	NA	NA
WP_080019389.1|68701_68893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002291751.1|68905_69409_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_002340862.1|69531_70296_-	RNA methyltransferase	NA	A0A2D1A6G0	Rhodococcus_phage	26.8	7.5e-06
>prophage 6
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	73308	74007	2601809		Streptococcus_phage(100.0%)	1	NA	NA
WP_016853041.1|73308_74007_-	CpsD/CapB family tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	37.6	3.5e-26
>prophage 7
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	85321	94041	2601809		Erwinia_phage(25.0%)	9	NA	NA
WP_147586765.1|85321_86293_-	AAA family ATPase	NA	W8D063	Erwinia_phage	49.8	3.5e-48
WP_002291696.1|86998_88378_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_002335977.1|88533_88980_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	38.8	1.6e-19
WP_002287321.1|89006_89183_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_002287322.1|89344_89773_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_002294941.1|89863_90724_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_002291691.1|90807_91101_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002291690.1|91173_92901_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	62.9	5.3e-209
WP_002291688.1|93114_94041_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	52.8	2.3e-89
>prophage 8
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	101488	105024	2601809		Bacillus_phage(100.0%)	2	NA	NA
WP_002329480.1|101488_103273_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.8	1.2e-46
WP_002291671.1|103272_105024_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	30.6	1.9e-57
>prophage 9
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	109297	110200	2601809		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_002335980.1|109297_110200_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	30.7	1.5e-21
>prophage 10
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	118912	119851	2601809		Bacillus_phage(100.0%)	1	NA	NA
WP_002291647.1|118912_119851_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	51.2	5.5e-75
>prophage 11
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	127967	129548	2601809		Bacillus_virus(100.0%)	2	NA	NA
WP_002292757.1|127967_128726_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.8	3.9e-15
WP_002292758.1|128741_129548_-	phosphate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.4	3.6e-14
>prophage 12
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	135152	135839	2601809		Bacillus_virus(100.0%)	1	NA	NA
WP_002292768.1|135152_135839_-	cell division ATP-binding protein FtsE	NA	G3M9Y6	Bacillus_virus	25.0	5.5e-16
>prophage 13
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	143557	144202	2601809		Streptococcus_phage(100.0%)	1	NA	NA
WP_002292780.1|143557_144202_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	52.3	1.0e-48
>prophage 14
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	147691	147988	2601809		Staphylococcus_phage(100.0%)	1	NA	NA
WP_147586767.1|147691_147988_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	58.0	3.0e-19
>prophage 15
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	157130	159974	2601809		Staphylococcus_phage(50.0%)	2	NA	NA
WP_002292799.1|157130_157595_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	58.5	1.0e-45
WP_002329493.1|157616_159974_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	41.9	3.1e-98
>prophage 16
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	166912	168211	2601809		Streptococcus_phage(100.0%)	1	NA	NA
WP_002292812.1|166912_168211_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	81.5	3.6e-194
>prophage 17
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	179123	180491	2601809		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_002292830.1|179123_180491_+	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	32.7	8.1e-27
>prophage 18
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	200747	214136	2601809		Staphylococcus_phage(16.67%)	11	NA	NA
WP_002290805.1|200747_201647_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.7	5.5e-24
WP_002336006.1|201790_203569_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_002290803.1|203750_204065_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	40.8	3.6e-15
WP_002290802.1|204151_206512_-	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	51.3	1.7e-24
WP_002333754.1|206654_207203_-	CvpA family protein	NA	NA	NA	NA	NA
WP_002290800.1|207260_207698_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_002336566.1|207899_208817_+	ribonuclease HIII	NA	NA	NA	NA	NA
WP_002290913.1|209109_210024_-	N-acetylmuramoyl-L-alanine amidase	NA	C8CHK8	Thermus_virus	41.1	5.3e-06
WP_002336008.1|210145_212437_-	hypothetical protein	NA	A0A2K9L3D4	Tupanvirus	30.1	5.0e-37
WP_002290909.1|212869_213448_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002290906.1|213467_214136_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.8	8.0e-36
>prophage 19
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	238511	240446	2601809		Tupanvirus(100.0%)	1	NA	NA
WP_002336010.1|238511_240446_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	31.4	1.4e-56
>prophage 20
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	243972	256892	2601809		Mycoplasma_phage(40.0%)	12	NA	NA
WP_002293466.1|243972_245103_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	45.0	3.9e-83
WP_002293464.1|245661_246735_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002287036.1|246731_247559_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002287038.1|247559_248366_-	ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	27.6	7.9e-14
WP_002287039.1|248377_249463_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	45.0	4.0e-37
WP_002287040.1|249479_250022_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002293462.1|250279_251269_+	oxidoreductase	NA	NA	NA	NA	NA
WP_002293460.1|251265_252003_+	phosphopantothenate--cysteine ligase	NA	NA	NA	NA	NA
WP_002287045.1|251999_252551_+	phosphopantothenoylcysteine decarboxylase	NA	A0A1V0S7W6	Shearwaterpox_virus	41.2	3.2e-30
WP_002287046.1|252566_253199_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002329511.1|253934_254918_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_002329512.1|255377_256892_-	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	30.7	1.7e-49
>prophage 21
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	264825	270267	2601809	tRNA	Cafeteria_roenbergensis_virus(33.33%)	6	NA	NA
WP_002336014.1|264825_265578_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	47.1	8.3e-58
WP_002329516.1|266318_266852_+	exonuclease	NA	A0A1S5SFA9	Streptococcus_phage	43.4	7.8e-26
WP_002287063.1|267340_267865_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002287066.1|267857_268331_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_002291445.1|268453_269434_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_002329517.1|269586_270267_-	uracil-DNA glycosylase	NA	A0A0B5IW78	Pandoravirus	43.3	4.3e-45
>prophage 22
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	275954	276704	2601809		Lactobacillus_phage(100.0%)	1	NA	NA
WP_002287078.1|275954_276704_+	nicotinamide mononucleotide transporter	NA	A0A2H4PB74	Lactobacillus_phage	70.7	5.1e-92
>prophage 23
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	281665	282571	2601809		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002299964.1|281665_282571_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	39.4	2.3e-38
>prophage 24
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	292188	293310	2601809		Streptococcus_phage(100.0%)	1	NA	NA
WP_002291594.1|292188_293310_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	31.3	5.8e-23
>prophage 25
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	302911	312303	2601809		Planktothrix_phage(25.0%)	6	NA	NA
WP_147586770.1|302911_303985_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	35.0	7.5e-28
WP_002321117.1|304630_305302_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_073357594.1|305388_308067_-	magnesium-translocating P-type ATPase	NA	M1HXH2	Paramecium_bursaria_Chlorella_virus	25.6	1.5e-48
WP_002293327.1|308725_309163_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	46.2	4.1e-25
WP_147586771.1|309184_310051_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_002329531.1|310209_312303_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	47.1	1.6e-162
>prophage 26
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	317452	319185	2601809		Lactobacillus_virus(33.33%)	3	NA	NA
WP_002336017.1|317452_318154_-	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	47.7	3.9e-49
WP_002293607.1|318169_318610_-	nucleoside deoxyribosyltransferase	NA	A0A2P0ZL88	Lactobacillus_phage	50.7	8.9e-36
WP_002293608.1|318609_319185_-	TIGR00730 family Rossman fold protein	NA	A0A1D3SNB7	Enterococcus_phage	44.9	1.5e-35
>prophage 27
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	325052	326215	2601809	transposase	Paenibacillus_phage(100.0%)	1	NA	NA
WP_086956687.1|325052_326215_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
>prophage 28
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	335699	337142	2601809		Pandoravirus(100.0%)	1	NA	NA
WP_002291139.1|335699_337142_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	27.4	1.6e-33
>prophage 29
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	349583	350801	2601809	transposase	Streptococcus_phage(100.0%)	1	NA	NA
WP_002329089.1|349583_350801_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.4	2.9e-68
>prophage 30
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	353947	357417	2601809		Brazilian_cedratvirus(50.0%)	3	NA	NA
WP_002291166.1|353947_354586_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.8	5.9e-12
WP_002329542.1|354589_356626_-	DUF1430 domain-containing protein	NA	NA	NA	NA	NA
WP_002291169.1|356751_357417_+	helix-turn-helix domain-containing protein	NA	A0A2I7SCV6	Paenibacillus_phage	47.1	2.2e-06
>prophage 31
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	360655	367833	2601809		environmental_halophage(25.0%)	8	NA	NA
WP_016853083.1|360655_361891_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	47.7	3.0e-113
WP_002287681.1|361887_363174_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_002287679.1|363186_363960_-	Fe-S cluster assembly ATPase SufC	NA	A0A2R8FG22	Brazilian_cedratvirus	28.8	2.1e-08
WP_002291174.1|364156_365005_-	methionine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002287674.1|365028_365715_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002304234.1|365707_366742_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	35.1	4.2e-28
WP_002291179.1|367136_367475_-	glycine cleavage system protein H	NA	NA	NA	NA	NA
WP_002295166.1|367476_367833_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	42.3	2.7e-22
>prophage 32
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	372865	374523	2601809		Acanthamoeba_polyphaga_mimivirus(50.0%)	2	NA	NA
WP_002291193.1|372865_373330_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	37.2	8.8e-18
WP_002289773.1|373575_374523_+	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	51.0	5.0e-84
>prophage 33
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	383630	391699	2601809		Enterococcus_phage(25.0%)	7	NA	NA
WP_002291205.1|383630_384230_+	metallophosphatase	NA	A0A288TXW7	Enterococcus_phage	40.0	5.6e-33
WP_002291207.1|384367_385654_-	multidrug efflux MFS transporter EfmA	NA	A0A1B0RXG2	Streptococcus_phage	36.7	4.0e-68
WP_002286736.1|385924_386269_-	DUF1831 domain-containing protein	NA	NA	NA	NA	NA
WP_002336026.1|386405_387542_-	cysteine desulfurase	NA	NA	NA	NA	NA
WP_002286741.1|387730_388705_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	32.2	2.0e-40
WP_002336027.1|388784_389660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002336028.1|389791_391699_+	peptidase M13	NA	E3T4I7	Cafeteria_roenbergensis_virus	31.1	1.4e-80
>prophage 34
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	395527	403357	2601809	lysis	Bacillus_virus(33.33%)	9	NA	NA
WP_002314540.1|395527_396073_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	38.5	6.7e-25
WP_002308200.1|396084_396777_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_002286760.1|396795_397080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002329574.1|397092_397656_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_002329575.1|397883_398546_+|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_016853088.1|398667_399864_+	toxic anion resistance protein	NA	A0A2K9VCT6	Lactobacillus_phage	28.7	3.0e-33
WP_002312044.1|399963_401340_-	amino acid permease	NA	NA	NA	NA	NA
WP_002291228.1|401376_402243_-	glucose transporter GlcU	NA	NA	NA	NA	NA
WP_002291231.1|402331_403357_-	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	33.8	1.4e-07
>prophage 35
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	419982	424024	2601809		Bacillus_phage(50.0%)	3	NA	NA
WP_002314527.1|419982_420558_-	SOS response-associated peptidase	NA	A0A1P8CX02	Bacillus_phage	34.4	7.9e-08
WP_002336038.1|421282_421864_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002336041.1|422695_424024_-	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	58.0	1.1e-140
>prophage 36
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	432315	432912	2601809		Enterococcus_phage(100.0%)	1	NA	NA
WP_002336046.1|432315_432912_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A249XZV3	Enterococcus_phage	55.7	9.3e-36
>prophage 37
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	437144	437891	2601809		Staphylococcus_phage(100.0%)	1	NA	NA
WP_147586780.1|437144_437891_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.8	3.6e-13
>prophage 38
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	446426	447809	2601809		Streptococcus_phage(100.0%)	1	NA	NA
WP_002336237.1|446426_447809_+	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	40.8	1.4e-90
>prophage 39
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	460291	465187	2601809		Paramecium_bursaria_Chlorella_virus(33.33%)	5	NA	NA
WP_002336061.1|460291_462187_-	MBL fold metallo-hydrolase	NA	M1HPV7	Paramecium_bursaria_Chlorella_virus	40.7	3.5e-105
WP_016853093.1|462314_463082_-	DnaJ domain-containing protein	NA	A0A1V0SCV5	Indivirus	54.9	2.6e-06
WP_002289434.1|463279_463843_-	elongation factor P	NA	NA	NA	NA	NA
WP_099108003.1|463926_464124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292689.1|464269_465187_+	cysteine synthase family protein	NA	A0A1W6JHY1	Lactococcus_phage	42.3	3.6e-63
>prophage 40
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	474374	478263	2601809		Bacillus_virus(50.0%)	4	NA	NA
WP_002336062.1|474374_476561_-	ATP-dependent helicase	NA	G3MA40	Bacillus_virus	27.1	4.2e-41
WP_147586782.1|476780_477464_+	DUF1275 family protein	NA	NA	NA	NA	NA
WP_073357484.1|477425_477608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016853096.1|477543_478263_-	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	47.7	1.8e-49
>prophage 41
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	489535	490237	2601809		Planktothrix_phage(100.0%)	1	NA	NA
WP_002293249.1|489535_490237_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.0	1.2e-34
>prophage 42
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	495300	497466	2601809		Clostridium_phage(100.0%)	1	NA	NA
WP_002336067.1|495300_497466_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0A8WF62	Clostridium_phage	45.6	2.6e-19
>prophage 43
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	500612	501365	2601809		Planktothrix_phage(100.0%)	1	NA	NA
WP_002312797.1|500612_501365_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	4.9e-34
>prophage 44
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	507375	511568	2601809		Bacillus_phage(66.67%)	3	NA	NA
WP_002336068.1|507375_508419_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	38.2	1.1e-52
WP_002293217.1|508421_509090_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	45.9	4.8e-49
WP_002293214.1|509231_511568_+	ABC transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	38.4	4.0e-34
>prophage 45
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	519670	520888	2601809	transposase	Streptococcus_phage(100.0%)	1	NA	NA
WP_002329618.1|519670_520888_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.4	3.8e-68
>prophage 46
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	526537	531914	2601809		Vibrio_phage(50.0%)	3	NA	NA
WP_002292610.1|526537_528703_-	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	32.7	7.3e-06
WP_002329613.1|528961_531256_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA	NA
WP_002329614.1|531248_531914_+	beta-phosphoglucomutase	NA	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	27.4	2.3e-11
>prophage 47
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	542430	547360	2601809	tRNA	Pectobacterium_phage(50.0%)	4	NA	NA
WP_002315946.1|542430_543687_-|tRNA	tyrosine--tRNA ligase	tRNA	A0A1L2CUL7	Pectobacterium_phage	42.5	1.2e-80
WP_002329620.1|544257_545559_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_002329621.1|545625_546225_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002336074.1|546478_547360_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.4	9.5e-21
>prophage 48
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	563391	568617	2601809		Ostreococcus_tauri_virus(33.33%)	6	NA	NA
WP_002336078.1|563391_563706_-	rhodanese-like domain-containing protein	NA	E4WM79	Ostreococcus_tauri_virus	34.9	3.4e-05
WP_002292566.1|563875_564136_+	metal-sensitive transcriptional regulator	NA	NA	NA	NA	NA
WP_002329633.1|564149_564464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_147586786.1|564991_565546_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA	NA
WP_002336079.1|565666_567595_-	DNA mismatch repair protein MutS2	NA	F2Y0V3	Organic_Lake_phycodnavirus	31.3	2.1e-20
WP_002336080.1|567900_568617_-	aquaporin family protein	NA	M1HVL5	Acanthocystis_turfacea_Chlorella_virus	37.3	7.0e-30
>prophage 49
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	579624	580938	2601809		Moraxella_phage(100.0%)	1	NA	NA
WP_002292548.1|579624_580938_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	32.1	4.4e-46
>prophage 50
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	602010	604563	2601809		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_147586791.1|602010_604563_-	HAD-IC family P-type ATPase	NA	M1I547	Acanthocystis_turfacea_Chlorella_virus	30.2	1.0e-67
>prophage 51
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	616251	617385	2601809		Synechococcus_phage(100.0%)	1	NA	NA
WP_002292500.1|616251_617385_+	alcohol dehydrogenase catalytic domain-containing protein	NA	E3SJ82	Synechococcus_phage	24.5	2.5e-13
>prophage 52
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	636418	638299	2601809		Streptococcus_phage(100.0%)	1	NA	NA
WP_002336103.1|636418_638299_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.4	1.3e-99
>prophage 53
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	642882	644361	2601809		Bacillus_phage(100.0%)	1	NA	NA
WP_002336108.1|642882_644361_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	24.3	1.5e-18
>prophage 54
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	657992	658502	2601809		Enterobacteria_phage(100.0%)	1	NA	NA
WP_002296569.1|657992_658502_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	34.8	2.8e-17
>prophage 55
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	668374	669562	2601809		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_002315619.1|668374_669562_+	PDZ domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	30.2	5.2e-22
>prophage 56
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	682918	690358	2601809	transposase	Bacillus_phage(33.33%)	8	NA	NA
WP_099036936.1|682918_684344_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	40.6	2.3e-48
WP_002315607.1|684494_686315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293355.1|686553_686913_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_002289309.1|686965_687166_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_002293357.1|687237_687762_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.3	1.4e-14
WP_002336138.1|688081_688714_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_002313988.1|688715_689621_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002315605.1|689704_690358_-	deoxynucleoside kinase	NA	C1KFI3	Lactobacillus_virus	52.3	1.1e-58
>prophage 57
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	714894	723051	2601809	tRNA,holin	uncultured_Mediterranean_phage(33.33%)	5	NA	NA
WP_002294183.1|714894_716040_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	40.9	2.5e-82
WP_002293400.1|716254_716953_+	DUF975 family protein	NA	NA	NA	NA	NA
WP_002336144.1|717121_719761_-	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	30.5	2.2e-84
WP_002293403.1|720626_721658_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002329721.1|721875_723051_+|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	32.9	1.0e-17
>prophage 58
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	732210	735718	2601809		Lactobacillus_phage(50.0%)	4	NA	NA
WP_002289874.1|732210_732573_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A291I9M9	Lactobacillus_phage	37.8	7.6e-09
WP_002329725.1|732583_733705_-	alanine racemase	NA	NA	NA	NA	NA
WP_002293418.1|733720_734071_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_086283475.1|734200_735718_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.2	2.3e-62
>prophage 59
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	738810	745089	2601809		Ostreococcus_lucimarinus_virus(33.33%)	6	NA	NA
WP_147586795.1|738810_740556_+	AarF/ABC1/UbiB kinase family protein	NA	M4R0M8	Ostreococcus_lucimarinus_virus	28.0	1.6e-40
WP_002293427.1|740738_741206_-	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_002329728.1|741189_742563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586796.1|742885_743374_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002293431.1|743395_743998_-	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	30.6	2.1e-19
WP_002289751.1|744459_745089_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	40.2	3.1e-34
>prophage 60
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	751380	753372	2601809		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_002293439.1|751380_753372_-	potassium transporter Kup	NA	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	34.1	2.2e-65
>prophage 61
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	757125	757689	2601809		Synechococcus_phage(100.0%)	1	NA	NA
WP_002293455.1|757125_757689_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	37.1	2.3e-12
>prophage 62
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	764198	764939	2601809		Planktothrix_phage(100.0%)	1	NA	NA
WP_002293446.1|764198_764939_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	1.2e-29
>prophage 63
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	773546	784216	2601809		Bacillus_phage(25.0%)	8	NA	NA
WP_147586798.1|773546_774548_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	26.2	1.1e-07
WP_002290528.1|774560_775163_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_002309788.1|775331_775778_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_002290526.1|775854_776568_-	trehalose operon repressor	NA	A0A291LID1	Streptomyces_phage	39.7	1.2e-05
WP_002290525.1|776790_778779_+	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_002290524.1|778863_779424_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_016853151.1|779444_781553_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	40.3	2.6e-56
WP_002290522.1|781570_784216_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	26.1	8.0e-39
>prophage 64
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	789732	791555	2601809		Pneumococcus_phage(33.33%)	3	NA	NA
WP_002290510.1|789732_790242_-	QueT transporter family protein	NA	E7DN70	Pneumococcus_phage	31.2	1.3e-09
WP_002290507.1|790575_791337_-	3-oxoacyl-ACP reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	32.1	1.2e-16
WP_002336153.1|791333_791555_-	DUF2829 domain-containing protein	NA	A0A0S2MV93	Bacillus_phage	32.2	9.1e-05
>prophage 65
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	794590	795325	2601809		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_002290500.1|794590_795325_+	aquaporin family protein	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	31.4	1.4e-25
>prophage 66
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	805228	807880	2601809		Brazilian_cedratvirus(50.0%)	3	NA	NA
WP_147586799.1|805228_805984_-	ATP-binding cassette domain-containing protein	NA	A0A2R8FG22	Brazilian_cedratvirus	27.1	1.1e-12
WP_002290485.1|805980_806937_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_002290484.1|806929_807880_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.5	2.8e-66
>prophage 67
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	816452	817139	2601809		Megavirus(100.0%)	1	NA	NA
WP_002287896.1|816452_817139_-	ribonuclease III	NA	K7YH73	Megavirus	32.3	9.1e-27
>prophage 68
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	821197	826864	2601809		Bacillus_virus(33.33%)	5	NA	NA
WP_002309831.1|821197_822142_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.1	3.9e-20
WP_002309832.1|822142_823147_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.6	3.9e-18
WP_002294295.1|823414_823657_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_002315510.1|823777_824779_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_002336161.1|824827_826864_-	ATP-dependent DNA helicase RecG	NA	A0A2H4JBQ0	uncultured_Caudovirales_phage	22.0	1.8e-06
>prophage 69
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	834512	836197	2601809		Staphylococcus_phage(50.0%)	2	NA	NA
WP_002329760.1|834512_835382_-	energy-coupling factor ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	2.2e-14
WP_002290456.1|835357_836197_-	energy-coupling factor ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	2.9e-19
>prophage 70
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	850967	857191	2601809		Klosneuvirus(33.33%)	6	NA	NA
WP_002290442.1|850967_852155_-	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	24.4	6.4e-12
WP_002290441.1|852326_854414_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.9	2.0e-64
WP_002290440.1|854507_854978_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_002294318.1|855061_855475_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_002290438.1|855793_856477_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_002290435.1|856609_857191_+	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	33.0	1.4e-17
>prophage 71
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	861623	862442	2601809		Grouper_iridovirus(100.0%)	1	NA	NA
WP_002291120.1|861623_862442_-	purine-nucleoside phosphorylase	NA	Q5YBA4	Grouper_iridovirus	45.8	9.1e-58
>prophage 72
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	865813	871163	2601809		Staphylococcus_phage(33.33%)	5	NA	NA
WP_002291113.1|865813_867376_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.4	1.7e-20
WP_002291111.1|867587_868670_-	BMP family ABC transporter substrate-binding protein	NA	A0A0A7DN02	Lactobacillus_phage	41.1	1.2e-57
WP_002291109.1|868735_869134_-	cytidine deaminase	NA	NA	NA	NA	NA
WP_002291107.1|869152_869815_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_002291105.1|869861_871163_-	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.5	1.8e-124
>prophage 73
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	874411	875977	2601809		Hokovirus(100.0%)	1	NA	NA
WP_002291100.1|874411_875977_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	30.6	7.9e-18
>prophage 74
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	880730	882737	2601809		Planktothrix_phage(100.0%)	1	NA	NA
WP_147586801.1|880730_882737_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.6	5.7e-21
>prophage 75
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	894472	901077	2601809		Tupanvirus(25.0%)	4	NA	NA
WP_002292637.1|894472_896095_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.5	1.2e-48
WP_002329773.1|896223_897087_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	29.1	1.7e-09
WP_002288375.1|897748_899041_-	adenylosuccinate synthase	NA	G5CQQ4	Megavirus	36.0	8.1e-69
WP_002288373.1|899709_901077_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	54.8	3.0e-130
>prophage 76
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	904187	912431	2601809		Bacillus_virus(50.0%)	7	NA	NA
WP_002288368.1|904187_904700_-	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	60.0	1.3e-46
WP_002293129.1|904750_905050_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_002293127.1|905285_907757_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.4	1.1e-98
WP_002336166.1|907776_909723_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	43.6	2.0e-140
WP_016853167.1|909719_910844_-	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_002293125.1|910830_911073_-	S4 domain-containing protein YaaA	NA	NA	NA	NA	NA
WP_002293124.1|911300_912431_-	DNA polymerase III subunit beta	NA	A0A0A8IL17	Aurantimonas_phage	25.3	4.2e-29
>prophage 77
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	921811	931707	2601809	tRNA	Bacillus_phage(33.33%)	9	NA	NA
WP_002293108.1|921811_922579_+	ParA family protein	NA	Q8JL10	Natrialba_phage	33.2	8.3e-29
WP_002293107.1|922565_923456_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	33.5	1.1e-16
WP_002293106.1|923476_923668_+	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_002293105.1|923676_924777_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_002293104.1|924866_925562_+	DUF1129 domain-containing protein	NA	NA	NA	NA	NA
WP_002293341.1|926237_927722_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	42.0	1.5e-98
WP_002329775.1|928257_929529_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	53.3	4.1e-89
WP_002329776.1|929822_931031_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	27.3	2.7e-26
WP_002329777.1|931017_931707_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	38.5	4.6e-39
>prophage 78
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	938810	945180	2601809	protease	Klebsiella_phage(33.33%)	4	NA	NA
WP_002336607.1|938810_941297_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A0A8J958	Klebsiella_phage	38.3	4.8e-126
WP_002315795.1|941517_942441_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_033583204.1|942458_943700_+	U32 family peptidase	NA	Q6DW11	Phage_TP	32.9	5.6e-43
WP_002329780.1|943833_945180_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.0	1.6e-38
>prophage 79
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	962646	973417	2601809		Anomala_cuprea_entomopoxvirus(33.33%)	5	NA	NA
WP_002336172.1|962646_963453_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.0	1.5e-09
WP_002329794.1|963449_964355_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002329795.1|964372_965227_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002373855.1|966058_969685_+	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.7	1.5e-48
WP_002329796.1|969763_973417_+	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.9	1.1e-62
>prophage 80
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	988935	991836	2601809		Bodo_saltans_virus(50.0%)	2	NA	NA
WP_002329807.1|988935_990585_+	hypothetical protein	NA	A0A2H4UUR2	Bodo_saltans_virus	24.0	4.1e-09
WP_002329808.1|990900_991836_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.1	6.1e-18
>prophage 81
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1005930	1007709	2601809		Mycobacterium_phage(100.0%)	1	NA	NA
WP_080019396.1|1005930_1007709_+	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	26.6	5.4e-31
>prophage 82
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1013810	1015079	2601809		Brevibacillus_phage(100.0%)	1	NA	NA
WP_002329823.1|1013810_1015079_+	glycoside hydrolase family 73 protein	NA	A0A0K2CP65	Brevibacillus_phage	37.6	2.7e-16
>prophage 83
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1020204	1021683	2601809		Streptococcus_phage(100.0%)	1	NA	NA
WP_002329826.1|1020204_1021683_+	Msr family ABC-F type ribosomal protection protein	NA	A0A1B0RXA0	Streptococcus_phage	43.0	3.6e-89
>prophage 84
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1025578	1028386	2601809		Streptococcus_phage(66.67%)	3	NA	NA
WP_002329828.1|1025578_1026826_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	58.0	7.2e-115
WP_002287451.1|1026822_1027629_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	3.0e-45
WP_002293097.1|1027858_1028386_+	dUTP diphosphatase	NA	J9PV85	Bacillus_phage	55.2	6.3e-44
>prophage 85
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1033494	1034907	2601809	tRNA	Catovirus(100.0%)	1	NA	NA
WP_002293093.1|1033494_1034907_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	31.5	2.0e-52
>prophage 86
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1039012	1041560	2601809		Streptococcus_phage(50.0%)	2	NA	NA
WP_002293085.1|1039012_1040281_+	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	37.8	6.3e-66
WP_002293084.1|1040273_1041560_+	insulinase family protein	NA	A0A2H4UVM3	Bodo_saltans_virus	28.0	1.4e-07
>prophage 87
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1045282	1049192	2601809		Bacillus_phage(50.0%)	3	NA	NA
WP_002293077.1|1045282_1046332_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	68.6	4.5e-126
WP_002287336.1|1046750_1048307_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_002293075.1|1048385_1049192_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	33.7	9.9e-33
>prophage 88
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1054115	1059396	2601809		Anomala_cuprea_entomopoxvirus(33.33%)	4	NA	NA
WP_002293071.1|1054115_1054796_+	metal ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.7	5.1e-14
WP_002287344.1|1054768_1055593_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_002293070.1|1056957_1058331_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L277	Tupanvirus	35.8	3.4e-33
WP_002287347.1|1058424_1059396_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	32.6	4.9e-42
>prophage 89
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1064604	1075496	2601809	tRNA,transposase	Streptococcus_phage(20.0%)	9	NA	NA
WP_002329618.1|1064604_1065822_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.4	3.8e-68
WP_002293062.1|1066297_1066912_+	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	36.7	2.2e-24
WP_002287365.1|1066916_1067222_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_002293061.1|1067473_1069882_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_002293060.1|1069896_1070388_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.5	2.3e-16
WP_002293059.1|1070380_1071319_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	31.0	1.8e-09
WP_002293058.1|1071318_1072677_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
WP_002293057.1|1072689_1073430_+	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
WP_002293056.1|1073426_1075496_+	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A1V0SDC3	Indivirus	27.9	1.0e-20
>prophage 90
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1079671	1081276	2601809		Mycobacterium_phage(100.0%)	1	NA	NA
WP_104674444.1|1079671_1081276_+	hypothetical protein	NA	B5LJD6	Mycobacterium_phage	51.5	3.6e-18
>prophage 91
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1094664	1102572	2601809	tRNA,protease	Cafeteria_roenbergensis_virus(25.0%)	6	NA	NA
WP_016629107.1|1094664_1096110_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	E3T4I1	Cafeteria_roenbergensis_virus	26.0	4.7e-09
WP_002290941.1|1096109_1096655_+	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	25.3	4.1e-06
WP_002290943.1|1096744_1098856_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	50.3	2.0e-109
WP_002290945.1|1099072_1099960_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_002290947.1|1099960_1100965_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_002290948.1|1101075_1102572_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	40.9	5.1e-91
>prophage 92
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1110765	1111959	2601809		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002292731.1|1110765_1111959_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	71.2	1.6e-148
>prophage 93
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1115282	1126359	2601809	tRNA	Staphylococcus_phage(50.0%)	7	NA	NA
WP_002329921.1|1115282_1116995_+	ABC transporter ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	25.4	1.5e-14
WP_147586811.1|1116997_1118767_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	29.1	2.0e-54
WP_002335446.1|1118969_1119536_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	43.3	9.7e-35
WP_002285909.1|1119535_1120492_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	57.4	3.3e-43
WP_002292251.1|1120491_1121148_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_002292254.1|1121516_1123523_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A7NU10	Lactobacillus_phage	34.4	6.1e-15
WP_002292255.1|1123944_1126359_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	72.8	0.0e+00
>prophage 94
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1157380	1159751	2601809		Streptococcus_phage(50.0%)	2	NA	NA
WP_002285994.1|1157380_1157722_+	YlbF family regulator	NA	A0A1X9I5Y8	Streptococcus_phage	34.9	1.3e-10
WP_002329930.1|1157996_1159751_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.5	4.8e-40
>prophage 95
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1165847	1166840	2601809		Enterobacteria_phage(100.0%)	1	NA	NA
WP_002329936.1|1165847_1166840_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	29.4	2.5e-25
>prophage 96
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1196437	1197747	2601809		Streptomyces_phage(50.0%)	2	NA	NA
WP_002291337.1|1196437_1196872_-	HIT family protein	NA	D7NW73	Streptomyces_phage	34.1	9.2e-09
WP_002291338.1|1197009_1197747_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.7	8.2e-26
>prophage 97
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1210145	1211432	2601809		Bacillus_phage(100.0%)	1	NA	NA
WP_002328905.1|1210145_1211432_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	49.5	3.0e-108
>prophage 98
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1214651	1216865	2601809		Orpheovirus(100.0%)	1	NA	NA
WP_025477968.1|1214651_1216865_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	35.8	1.7e-10
>prophage 99
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1220183	1226393	2601809	tRNA	Orpheovirus(33.33%)	4	NA	NA
WP_002291383.1|1220183_1221476_+|tRNA	histidine--tRNA ligase	tRNA	A0A2I2L577	Orpheovirus	26.0	8.5e-26
WP_002291387.1|1221489_1223259_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SJ84	Klosneuvirus	25.3	6.6e-13
WP_002291388.1|1223367_1224243_+	YitT family protein	NA	NA	NA	NA	NA
WP_002335455.1|1224509_1226393_+	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	29.6	7.7e-28
>prophage 100
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1232683	1235878	2601809		Gordonia_phage(100.0%)	1	NA	NA
WP_002335457.1|1232683_1235878_+	DEAD/DEAH box helicase family protein	NA	A0A2L1IWL4	Gordonia_phage	28.1	9.1e-37
>prophage 101
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1250419	1255288	2601809		Bacillus_phage(50.0%)	3	NA	NA
WP_002335458.1|1250419_1252990_+	ATP-dependent RecD-like DNA helicase	NA	A0A218KCE8	Bacillus_phage	29.1	2.5e-61
WP_002328919.1|1253221_1254184_-	YegS/Rv2252/BmrU family lipid kinase	NA	NA	NA	NA	NA
WP_002315666.1|1254784_1255288_+	QueT transporter family protein	NA	E7DN70	Pneumococcus_phage	33.3	2.6e-07
>prophage 102
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1265880	1269276	2601809		Tupanvirus(50.0%)	3	NA	NA
WP_002290558.1|1265880_1267413_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	28.0	3.3e-45
WP_002287787.1|1267646_1268348_+	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
WP_002290559.1|1268562_1269276_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	43.7	8.5e-20
>prophage 103
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1287941	1291499	2601809		Enterococcus_phage(66.67%)	3	NA	NA
WP_002287792.1|1287941_1288907_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.4	3.4e-128
WP_147586814.1|1288956_1291116_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.3	5.9e-266
WP_002287795.1|1291274_1291499_-	glutaredoxin-like protein NrdH	NA	A0A0M7REK7	Lactobacillus_phage	42.7	1.7e-11
>prophage 104
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1295544	1296756	2601809		Bacillus_virus(100.0%)	1	NA	NA
WP_100207935.1|1295544_1296756_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.0	1.2e-29
>prophage 105
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1300708	1306300	2601809		Bacillus_phage(66.67%)	5	NA	NA
WP_002290592.1|1300708_1301413_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.6	5.8e-45
WP_002335465.1|1301417_1303253_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	37.7	5.2e-37
WP_002328930.1|1303249_1304566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002290596.1|1304566_1305436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002335466.1|1305490_1306300_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	33.2	1.5e-33
>prophage 106
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1309459	1311421	2601809		uncultured_virus(100.0%)	2	NA	NA
WP_002288862.1|1309459_1309744_+	co-chaperone GroES	NA	A0A221S4M3	uncultured_virus	40.2	2.0e-12
WP_002290607.1|1309795_1311421_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.8	4.9e-156
>prophage 107
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1324042	1326351	2601809		Bacillus_virus(100.0%)	2	NA	NA
WP_002291453.1|1324042_1325515_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.4	7.0e-109
WP_002291454.1|1325526_1326351_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	56.0	1.4e-77
>prophage 108
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1336812	1337973	2601809		Streptococcus_phage(100.0%)	1	NA	NA
WP_002291463.1|1336812_1337973_+	hydroxyacid dehydrogenase	NA	M1NSB9	Streptococcus_phage	35.8	7.3e-61
>prophage 109
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1345676	1351601	2601809		Bacillus_phage(66.67%)	4	NA	NA
WP_002291482.1|1345676_1347404_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.0	6.2e-48
WP_147586818.1|1347400_1349293_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	31.3	1.6e-60
WP_002291486.1|1349497_1350367_+	glyoxalase	NA	NA	NA	NA	NA
WP_002291488.1|1350575_1351601_+	serine hydrolase	NA	A0A076YS03	Mycobacterium_phage	28.3	1.0e-05
>prophage 110
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1361280	1362432	2601809		Micromonas_sp._RCC1109_virus(100.0%)	1	NA	NA
WP_002291501.1|1361280_1362432_+	mannitol-1-phosphate 5-dehydrogenase	NA	E5EQS6	Micromonas_sp._RCC1109_virus	30.5	5.8e-18
>prophage 111
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1370197	1376420	2601809		Lactococcus_phage(25.0%)	5	NA	NA
WP_002291517.1|1370197_1370782_+	thymidine kinase	NA	A0A1W6JJU6	Lactococcus_phage	52.6	1.6e-48
WP_002291522.1|1371849_1372689_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_002291530.1|1372882_1373908_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	42.7	1.3e-58
WP_002291533.1|1374073_1375318_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	54.8	2.6e-104
WP_002328941.1|1375472_1376420_+	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	43.8	5.2e-65
>prophage 112
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1384487	1390183	2601809		Planktothrix_phage(33.33%)	4	NA	NA
WP_002293345.1|1384487_1385123_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.0	2.4e-26
WP_002328943.1|1385140_1385956_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_147586819.1|1386110_1387547_+	family 1 glycosylhydrolase	NA	A0A0B5JD41	Pandoravirus	29.2	7.9e-49
WP_002293563.1|1387735_1390183_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.7	8.1e-86
>prophage 113
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1398454	1405248	2601809	tRNA	Bacillus_virus(40.0%)	6	NA	NA
WP_002293575.1|1398454_1399525_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.5	1.7e-19
WP_002293576.1|1399514_1400468_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.6	6.3e-18
WP_002293578.1|1400479_1401490_+	helix-turn-helix domain-containing protein	NA	A0A288TXV8	Enterococcus_phage	41.4	1.2e-56
WP_002293580.1|1401772_1402594_-	NUDIX hydrolase	NA	G3MA14	Bacillus_virus	32.3	3.5e-25
WP_002293582.1|1402691_1402970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293583.1|1403238_1405248_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	38.5	1.7e-97
>prophage 114
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1411239	1417360	2601809		Bacillus_phage(66.67%)	5	NA	NA
WP_002291070.1|1411239_1412349_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	33.0	7.0e-21
WP_002291069.1|1412557_1412980_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_002291062.1|1413302_1413839_+	folate family ECF transporter S component	NA	NA	NA	NA	NA
WP_002291060.1|1413878_1415642_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.4	8.5e-45
WP_002291058.1|1415644_1417360_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.9	1.3e-50
>prophage 115
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1426757	1427402	2601809		Apis_mellifera_filamentous_virus(100.0%)	1	NA	NA
WP_002291044.1|1426757_1427402_-	chitin-binding protein	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	33.5	7.0e-13
>prophage 116
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1433412	1434294	2601809		Bacillus_phage(100.0%)	1	NA	NA
WP_002315776.1|1433412_1434294_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	50.2	3.1e-72
>prophage 117
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1440461	1441124	2601809		Bacillus_virus(100.0%)	1	NA	NA
WP_002315781.1|1440461_1441124_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	9.4e-21
>prophage 118
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1459716	1462130	2601809		Bacillus_virus(33.33%)	3	NA	NA
WP_002290997.1|1459716_1460226_-	phosphatidylglycerophosphatase A	NA	G3MBC5	Bacillus_virus	55.4	4.5e-39
WP_002290995.1|1460336_1461335_-	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	54.1	3.4e-30
WP_002290993.1|1461545_1462130_+	peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	43.4	2.0e-27
>prophage 119
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1473373	1477978	2601809	transposase	Phaeocystis_globosa_virus(50.0%)	4	NA	NA
WP_002335494.1|1473373_1474702_+	aminopeptidase C	NA	R4TV59	Phaeocystis_globosa_virus	37.8	1.2e-72
WP_002335495.1|1474908_1475742_+	phosphotransferase	NA	NA	NA	NA	NA
WP_002335496.1|1475757_1476495_+	acyl-ACP thioesterase	NA	NA	NA	NA	NA
WP_002329089.1|1476760_1477978_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.4	2.9e-68
>prophage 120
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1481193	1481754	2601809		Geobacillus_virus(100.0%)	1	NA	NA
WP_016853400.1|1481193_1481754_+	haloacid dehalogenase	NA	A0A0H3UZF4	Geobacillus_virus	45.7	1.8e-28
>prophage 121
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1487513	1490159	2601809	tRNA	Catovirus(100.0%)	1	NA	NA
WP_002335503.1|1487513_1490159_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	43.2	2.8e-164
>prophage 122
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1493208	1508888	2601809	tRNA	Bacillus_phage(28.57%)	15	NA	NA
WP_002294067.1|1493208_1493409_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	71.2	3.7e-21
WP_002310218.1|1493666_1495346_-	ribonuclease J	NA	NA	NA	NA	NA
WP_002287947.1|1495347_1495560_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_002328986.1|1495952_1497683_+	multidrug efflux ABC transporter subunit EfrA	NA	W8CYL7	Bacillus_phage	27.8	2.7e-43
WP_002335505.1|1497679_1499440_+	multidrug efflux ABC transporter subunit EfrB	NA	W8CYL7	Bacillus_phage	29.0	7.7e-54
WP_002315450.1|1499534_1499732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002310223.1|1499881_1500367_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_002289402.1|1500470_1501064_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.6	8.9e-55
WP_002289403.1|1501243_1501771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002335506.1|1501861_1502599_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	35.8	8.0e-13
WP_147586820.1|1502602_1503520_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_002335508.1|1503521_1504751_+	GTPase HflX	NA	NA	NA	NA	NA
WP_002290339.1|1504980_1505373_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002287001.1|1505400_1506741_+	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	25.6	9.1e-07
WP_002310226.1|1507277_1508888_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	48.4	3.9e-145
>prophage 123
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1524492	1542620	2601809		Streptococcus_phage(40.0%)	17	NA	NA
WP_002335527.1|1524492_1526238_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	36.1	2.8e-48
WP_002329006.1|1526258_1526573_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_002292338.1|1526597_1527194_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_002292339.1|1527257_1527902_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
WP_002292340.1|1527916_1528246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002292342.1|1528259_1529198_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.8	6.1e-34
WP_002292343.1|1529233_1530058_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002288076.1|1530050_1530398_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002292345.1|1530466_1531339_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.1	2.1e-89
WP_002310241.1|1531447_1532569_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002292348.1|1532622_1533225_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.0	4.9e-53
WP_002335528.1|1534029_1536219_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.2e-285
WP_002310242.1|1536538_1537306_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.6	6.1e-32
WP_002335529.1|1537295_1539338_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002292353.1|1539743_1539893_+	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_002292354.1|1539903_1541418_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	29.7	7.3e-45
WP_002329012.1|1541414_1542620_+	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	30.7	5.0e-20
>prophage 124
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1546262	1547003	2601809		Pandoravirus(100.0%)	1	NA	NA
WP_016853388.1|1546262_1547003_+	MBL fold metallo-hydrolase	NA	S4VYV9	Pandoravirus	25.4	5.6e-06
>prophage 125
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1566195	1568388	2601809		Enterococcus_phage(50.0%)	2	NA	NA
WP_002291887.1|1566195_1567050_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.7	3.1e-40
WP_002291885.1|1567050_1568388_+	exodeoxyribonuclease VII large subunit	NA	L7RDW5	Acanthamoeba_polyphaga_moumouvirus	29.0	5.1e-26
>prophage 126
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1589409	1593783	2601809	tRNA	Bodo_saltans_virus(50.0%)	2	NA	NA
WP_002291844.1|1589409_1592208_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.4	7.4e-75
WP_002291842.1|1592256_1593783_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	35.3	8.9e-75
>prophage 127
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1596798	1598076	2601809		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_002291838.1|1596798_1598076_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	28.5	2.2e-34
>prophage 128
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1615429	1618881	2601809		Escherichia_phage(75.0%)	4	NA	NA
WP_002292884.1|1615429_1616296_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	62.5	2.2e-102
WP_002292883.1|1616309_1616882_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	48.6	4.1e-41
WP_002335543.1|1616903_1617932_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	42.9	1.1e-68
WP_002315336.1|1618029_1618881_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	39.0	1.7e-38
>prophage 129
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1623299	1624520	2601809		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002289079.1|1623299_1624520_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	1.1e-11
>prophage 130
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1630706	1631696	2601809		Catovirus(100.0%)	1	NA	NA
WP_002335548.1|1630706_1631696_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	33.6	5.9e-11
>prophage 131
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1636909	1644716	2601809	transposase	Mycobacterium_phage(50.0%)	6	NA	NA
WP_002315323.1|1636909_1637320_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	4.1e-19
WP_002325481.1|1637444_1638836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002335553.1|1638969_1639914_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SKV4	Klosneuvirus	37.8	7.3e-51
WP_002335481.1|1640122_1641313_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_002335555.1|1641567_1643292_+	C40 family peptidase	NA	B5LJD6	Mycobacterium_phage	41.1	4.8e-16
WP_002335557.1|1643555_1644716_-	serine hydrolase	NA	A0A2R4AS58	Mycobacterium_phage	24.2	8.4e-09
>prophage 132
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1652562	1660037	2601809		Indivirus(20.0%)	8	NA	NA
WP_147586829.1|1652562_1653477_+	cation diffusion facilitator family transporter	NA	A0A1V0SED0	Indivirus	31.5	2.7e-10
WP_002292862.1|1653524_1653995_+	GtrA family protein	NA	NA	NA	NA	NA
WP_002292861.1|1654079_1654688_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	60.6	1.2e-70
WP_002292860.1|1654821_1655022_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	67.7	7.6e-19
WP_002295400.1|1655776_1657003_+	LytR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002292857.1|1657110_1657581_-	tryptophan-rich sensory protein	NA	NA	NA	NA	NA
WP_002292856.1|1657902_1658481_+	chitin-binding protein	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	34.4	9.7e-14
WP_002318633.1|1658654_1660037_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	37.4	4.6e-86
>prophage 133
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1666416	1675406	2601809	protease	Streptococcus_phage(33.33%)	6	NA	NA
WP_002290823.1|1666416_1667997_+	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	28.4	3.9e-33
WP_002290824.1|1668191_1668416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002290825.1|1670231_1670552_-	DUF1827 family protein	NA	NA	NA	NA	NA
WP_002287598.1|1670699_1672934_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	39.1	5.1e-127
WP_002287602.1|1673412_1673679_+	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_002290826.1|1673678_1675406_+	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	35.9	9.3e-20
>prophage 134
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1683200	1683938	2601809		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_002329058.1|1683200_1683938_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	29.3	5.4e-17
>prophage 135
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1691350	1691998	2601809		Bacillus_virus(100.0%)	1	NA	NA
WP_002322947.1|1691350_1691998_+	nicotinate-nucleotide adenylyltransferase	NA	G3MA22	Bacillus_virus	33.2	4.8e-22
>prophage 136
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1699392	1703719	2601809	tRNA	Streptococcus_phage(50.0%)	3	NA	NA
WP_147586831.1|1699392_1701216_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	29.0	1.7e-64
WP_002287649.1|1701262_1701442_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_002335562.1|1701778_1703719_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	35.1	9.5e-114
>prophage 137
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1708771	1715355	2601809		Moraxella_phage(50.0%)	3	NA	NA
WP_002310391.1|1708771_1710208_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	29.2	1.7e-43
WP_002290959.1|1711633_1711819_-	YjzD family protein	NA	NA	NA	NA	NA
WP_002329063.1|1712043_1715355_+	DNA polymerase III subunit alpha	NA	A0A291AWR1	Streptomyces_phage	32.7	9.7e-151
>prophage 138
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1720441	1724243	2601809		Synechococcus_phage(33.33%)	3	NA	NA
WP_002290971.1|1720441_1721863_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A1D7RI04	Synechococcus_phage	31.4	4.2e-34
WP_002290973.1|1722054_1722741_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.2	4.8e-28
WP_002329065.1|1722737_1724243_+	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	25.1	3.9e-06
>prophage 139
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1739772	1740534	2601809		Moumouvirus(100.0%)	1	NA	NA
WP_002329074.1|1739772_1740534_+	MurR/RpiR family transcriptional regulator	NA	M1PMA6	Moumouvirus	30.3	6.3e-05
>prophage 140
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1773036	1776305	2601809		Planktothrix_phage(50.0%)	3	NA	NA
WP_002335582.1|1773036_1774725_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	1.6e-16
WP_002291799.1|1774741_1775293_-	ECF-type riboflavin transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002291802.1|1775882_1776305_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	48.9	3.5e-29
>prophage 141
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1780486	1781278	2601809		Escherichia_phage(100.0%)	1	NA	NA
WP_002309656.1|1780486_1781278_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	29.8	1.0e-18
>prophage 142
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1798356	1801023	2601809		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_002290118.1|1798356_1801023_+	cation-translocating P-type ATPase	NA	M1HJQ2	Paramecium_bursaria_Chlorella_virus	30.0	1.7e-81
>prophage 143
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1808685	1812910	2601809		Staphylococcus_phage(50.0%)	2	NA	NA
WP_002335592.1|1808685_1809537_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.4	3.7e-54
WP_002289463.1|1811722_1812910_+	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	28.5	1.3e-33
>prophage 144
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1816643	1823854	2601809		Bacillus_phage(25.0%)	5	NA	NA
WP_002290135.1|1816643_1817276_+	transglycosylase SLT domain-containing protein	NA	A0A0N9SIT8	Bacillus_phage	38.1	5.6e-15
WP_002290136.1|1817333_1818194_+	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_047929806.1|1818304_1820698_+	cation-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	26.4	4.3e-39
WP_147586834.1|1820879_1822721_+	DNA primase	NA	A0A1S5RH70	Helicobacter_phage	33.2	4.6e-49
WP_002290142.1|1822744_1823854_+	RNA polymerase sigma factor RpoD	NA	F4YCU2	Synechococcus_phage	38.9	9.8e-39
>prophage 145
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1827997	1830601	2601809		uncultured_Mediterranean_phage(66.67%)	4	NA	NA
WP_002290156.1|1827997_1828885_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.0	6.0e-31
WP_002290158.1|1828903_1829275_+	protein RibT	NA	NA	NA	NA	NA
WP_033583144.1|1829280_1830042_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	25.0	2.3e-07
WP_002290163.1|1830025_1830601_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	33.9	1.1e-14
>prophage 146
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1838056	1839460	2601809		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_002290173.1|1838056_1839460_+	ATP-dependent DNA helicase RecQ	NA	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	35.6	2.5e-63
>prophage 147
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1843987	1844263	2601809		Geobacillus_virus(100.0%)	1	NA	NA
WP_002290178.1|1843987_1844263_+	HU family DNA-binding protein	NA	A0A0H3UZA0	Geobacillus_virus	69.7	1.8e-26
>prophage 148
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1847468	1850144	2601809	tRNA	Streptococcus_phage(50.0%)	3	NA	NA
WP_002290183.1|1847468_1848344_-	YitT family protein	NA	M1Q1P6	Streptococcus_phage	45.6	2.6e-63
WP_002335599.1|1848491_1848824_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_002290186.1|1848935_1850144_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	51.7	2.0e-45
>prophage 149
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1853740	1858810	2601809		Staphylococcus_phage(50.0%)	5	NA	NA
WP_002335600.1|1853740_1855624_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	29.9	2.0e-52
WP_002290192.1|1855635_1856583_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	65.3	2.9e-124
WP_002290193.1|1856602_1857121_+	dihydrofolate reductase	NA	A0A1D6X864	Bacillus_phage	37.4	1.3e-22
WP_002290194.1|1857184_1857838_-	hemolysin III family protein	NA	NA	NA	NA	NA
WP_002290196.1|1857967_1858810_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	40.2	6.5e-19
>prophage 150
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1864421	1865189	2601809		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_147586837.1|1864421_1865189_+	ribonuclease HII	NA	D2TEQ2	Emiliania_huxleyi_virus	42.3	7.8e-27
>prophage 151
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1868658	1875183	2601809	tRNA,protease	Powai_lake_megavirus(33.33%)	5	NA	NA
WP_002290218.1|1868658_1870737_+	type I DNA topoisomerase	NA	A0A167R9A0	Powai_lake_megavirus	38.4	2.0e-101
WP_002372288.1|1870705_1872082_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_002290220.1|1872279_1873185_+	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	29.4	7.2e-32
WP_002335632.1|1873220_1873769_+	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
WP_002290222.1|1873782_1875183_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A173GFL6	Erwinia_phage	29.0	1.7e-43
>prophage 152
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1878456	1885472	2601809		Bacillus_virus(66.67%)	3	NA	NA
WP_002329105.1|1878456_1880502_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.2	2.0e-114
WP_002290233.1|1880513_1882964_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.6	4.1e-98
WP_002309546.1|1883240_1885472_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	42.5	1.8e-169
>prophage 153
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1896875	1897841	2601809		Planktothrix_phage(100.0%)	1	NA	NA
WP_002335635.1|1896875_1897841_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	5.7e-27
>prophage 154
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1902684	1903308	2601809		Enterococcus_phage(100.0%)	1	NA	NA
WP_002329110.1|1902684_1903308_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A249XZV3	Enterococcus_phage	61.9	2.7e-38
>prophage 155
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1910312	1912971	2601809	transposase	Brazilian_cedratvirus(50.0%)	2	NA	NA
WP_002291563.1|1910312_1911332_+	lactate dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	33.5	5.3e-23
WP_002329089.1|1911753_1912971_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.4	2.9e-68
>prophage 156
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1922411	1923029	2601809		Clostridium_botulinum_C_phage(100.0%)	1	NA	NA
WP_002315168.1|1922411_1923029_+	glycoside hydrolase family 73 protein	NA	Q332B8	Clostridium_botulinum_C_phage	41.1	3.4e-25
>prophage 157
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1934721	1946932	2601809		Prochlorococcus_phage(25.0%)	12	NA	NA
WP_002329118.1|1934721_1935210_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	2.5e-23
WP_016852982.1|1935193_1936327_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002306865.1|1936339_1937635_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	1.0e-18
WP_002329120.1|1937814_1938192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292230.1|1938447_1939176_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	42.2	5.1e-44
WP_002292229.1|1939175_1939430_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002292228.1|1939431_1940103_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002292227.1|1940103_1942326_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.4	3.8e-151
WP_002335647.1|1942310_1943750_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	3.4e-52
WP_033583146.1|1943781_1944825_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	2.3e-61
WP_002292223.1|1944821_1945400_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
WP_002292222.1|1945396_1946932_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	49.2	5.3e-75
>prophage 158
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1954692	1960219	2601809		Brazilian_cedratvirus(33.33%)	3	NA	NA
WP_002336378.1|1954692_1956219_+	sugar ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.1	8.2e-12
WP_002287992.1|1957682_1958660_+	GMP reductase	NA	G3MBI2	Bacillus_virus	80.4	2.7e-149
WP_002292210.1|1958794_1960219_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.2	2.5e-18
>prophage 159
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1964444	1965851	2601809		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_002289686.1|1964444_1965851_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.5	2.8e-46
>prophage 160
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1970109	1971882	2601809		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_002335661.1|1970109_1971882_+	DNA helicase RecQ	NA	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	36.5	2.5e-81
>prophage 161
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1982209	1985012	2601809		Bacillus_phage(50.0%)	2	NA	NA
WP_002335666.1|1982209_1982746_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.3	5.4e-35
WP_002335667.1|1982738_1985012_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	30.9	5.7e-33
>prophage 162
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1988151	1992655	2601809		Streptococcus_phage(100.0%)	4	NA	NA
WP_002335670.1|1988151_1990080_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	38.5	1.0e-107
WP_002309434.1|1990276_1991110_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_002329133.1|1991300_1992005_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_002335671.1|1992028_1992655_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	50.0	1.2e-49
>prophage 163
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	1996056	1996977	2601809		Streptococcus_phage(100.0%)	1	NA	NA
WP_002316215.1|1996056_1996977_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	30.0	7.4e-24
>prophage 164
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2000307	2000931	2601809		Enterococcus_phage(100.0%)	1	NA	NA
WP_002329110.1|2000307_2000931_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A249XZV3	Enterococcus_phage	61.9	2.7e-38
>prophage 165
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2004495	2004684	2601809		Streptococcus_phage(100.0%)	1	NA	NA
WP_002292937.1|2004495_2004684_-	hypothetical protein	NA	W6LMT3	Streptococcus_phage	44.3	5.9e-05
>prophage 166
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2011314	2012781	2601809		Acinetobacter_phage(100.0%)	1	NA	NA
WP_002292944.1|2011314_2012781_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	38.6	1.2e-87
>prophage 167
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2016485	2021973	2601809	tRNA	Bacillus_phage(50.0%)	3	NA	NA
WP_002335679.1|2016485_2020208_+	helicase-exonuclease AddAB subunit AddA	NA	S5MMD7	Bacillus_phage	23.5	1.2e-24
WP_025477986.1|2020276_2020618_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002292949.1|2020929_2021973_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	33.6	1.9e-31
>prophage 168
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2026909	2027647	2601809		Planktothrix_phage(100.0%)	1	NA	NA
WP_002288042.1|2026909_2027647_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	1.3e-31
>prophage 169
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2030793	2034821	2601809	transposase	Ugandan_cassava_brown_streak_virus(50.0%)	4	NA	NA
WP_002329148.1|2030793_2032149_+	ribonuclease PH	NA	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	30.8	9.2e-15
WP_002292970.1|2032149_2032668_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_002292972.1|2032774_2033275_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_002329089.1|2033603_2034821_+|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	37.4	2.9e-68
>prophage 170
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2038915	2039671	2601809		Catovirus(100.0%)	1	NA	NA
WP_002329151.1|2038915_2039671_-	peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	38.5	1.3e-23
>prophage 171
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2047985	2056726	2601809		Bacillus_phage(20.0%)	8	NA	NA
WP_002329156.1|2047985_2050283_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	34.1	2.5e-81
WP_002295813.1|2050296_2050809_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.6	2.4e-32
WP_002297436.1|2051001_2051220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348030.1|2051398_2052031_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	59.4	2.3e-16
WP_002309377.1|2052168_2052420_+	DUF896 family protein	NA	NA	NA	NA	NA
WP_002329157.1|2052521_2054519_+	transketolase	NA	NA	NA	NA	NA
WP_002329158.1|2054765_2055659_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0K2CP65	Brevibacillus_phage	43.2	4.5e-18
WP_002329159.1|2055799_2056726_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	57.2	2.9e-97
>prophage 172
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2061604	2062303	2601809		Bacillus_phage(100.0%)	1	NA	NA
WP_002329164.1|2061604_2062303_+	DnaD domain protein	NA	A0A0N7AE27	Bacillus_phage	36.4	1.3e-12
>prophage 173
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2065371	2066019	2601809		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_002329167.1|2065371_2066019_-	Holliday junction resolvase RecU	NA	A0A2H4J3A4	uncultured_Caudovirales_phage	38.1	7.5e-23
>prophage 174
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2070466	2071150	2601809		Golden_Marseillevirus(100.0%)	1	NA	NA
WP_002329171.1|2070466_2071150_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.7	3.9e-14
>prophage 175
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2080185	2085044	2601809	tRNA	Klosneuvirus(50.0%)	3	NA	NA
WP_002315074.1|2080185_2081535_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	31.7	2.7e-51
WP_002335687.1|2081579_2082011_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002335688.1|2082401_2085044_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	34.4	7.4e-69
>prophage 176
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2088190	2088421	2601809		Lactococcus_phage(100.0%)	1	NA	NA
WP_002315067.1|2088190_2088421_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	49.2	7.2e-13
>prophage 177
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2091983	2098283	2601809		Bodo_saltans_virus(25.0%)	6	NA	NA
WP_002335693.1|2091983_2092895_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	29.1	6.4e-12
WP_002295862.1|2093127_2093667_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_002315063.1|2093680_2094964_+	uracil transporter	NA	Q9KX94	Enterobacteria_phage	37.3	4.1e-65
WP_002335694.1|2094976_2095903_+	aspartate carbamoyltransferase catalytic subunit	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	31.8	6.1e-26
WP_002335695.1|2095921_2097202_+	dihydroorotase	NA	NA	NA	NA	NA
WP_002315060.1|2097206_2098283_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.4	8.8e-61
>prophage 178
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2119953	2120724	2601809		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_002335710.1|2119953_2120724_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.3	9.6e-09
>prophage 179
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2123900	2126129	2601809		Streptococcus_phage(100.0%)	1	NA	NA
WP_002335714.1|2123900_2126129_+	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	52.2	1.7e-127
>prophage 180
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2137260	2139921	2601809		Planktothrix_phage(50.0%)	3	NA	NA
WP_002329199.1|2137260_2137947_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.5	5.1e-30
WP_002329200.1|2137952_2139026_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_002309252.1|2139246_2139921_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.3	4.3e-29
>prophage 181
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2154885	2155734	2601809		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002329212.1|2154885_2155734_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	37.4	9.8e-15
>prophage 182
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2166727	2169688	2601809		Pandoravirus(50.0%)	4	NA	NA
WP_016853262.1|2166727_2167285_+	AAA family ATPase	NA	S4W1R9	Pandoravirus	32.2	1.2e-13
WP_002329221.1|2167479_2167992_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002335719.1|2168024_2168993_-	sce7725 family protein	NA	NA	NA	NA	NA
WP_016853260.1|2168998_2169688_-	hypothetical protein	NA	U5PU21	Bacillus_phage	33.2	9.1e-19
>prophage 183
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2172913	2175988	2601809		Hokovirus(50.0%)	3	NA	NA
WP_002329225.1|2172913_2173858_-	dihydroorotate oxidase	NA	A0A1V0SH91	Hokovirus	43.9	7.5e-64
WP_002329226.1|2173941_2174589_-	lipoprotein	NA	NA	NA	NA	NA
WP_002329227.1|2174821_2175988_-	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	39.3	1.6e-47
>prophage 184
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2228525	2232605	2601809		Trichoplusia_ni_ascovirus(50.0%)	4	NA	NA
WP_002306620.1|2228525_2229419_-	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	45.7	2.0e-58
WP_002335732.1|2229498_2230437_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002291264.1|2230470_2230821_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_002329245.1|2231747_2232605_-	glycosyltransferase family 8 protein	NA	A0ZYL4	Archaeal_BJ1_virus	27.1	3.9e-19
>prophage 185
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2237878	2241420	2601809		Lactococcus_phage(50.0%)	4	NA	NA
WP_002306603.1|2237878_2238079_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	77.3	1.3e-23
WP_002293299.1|2238321_2238813_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_002306600.1|2239967_2240174_+	DUF3955 domain-containing protein	NA	NA	NA	NA	NA
WP_147586849.1|2240418_2241420_-	alpha/beta hydrolase fold domain-containing protein	NA	A0A2P1EM31	Moumouvirus	32.5	3.9e-10
>prophage 186
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2248061	2251619	2601809		Enterococcus_phage(50.0%)	5	NA	NA
WP_002329253.1|2248061_2248847_-	glycerophosphodiester phosphodiesterase family protein	NA	A0A0S2MYI4	Enterococcus_phage	30.3	3.1e-07
WP_002293281.1|2249456_2249672_+	DUF378 domain-containing protein	NA	NA	NA	NA	NA
WP_002329254.1|2249809_2250295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002291921.1|2250375_2251014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002291922.1|2251205_2251619_+	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	30.8	2.1e-07
>prophage 187
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2256439	2256637	2601809		Lactococcus_phage(100.0%)	1	NA	NA
WP_002291933.1|2256439_2256637_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	78.5	2.3e-23
>prophage 188
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2262722	2303127	2601809	terminase,holin,integrase,portal,tail,capsid	Bacillus_phage(23.33%)	51	2281591:2281606	2299703:2299718
WP_104886065.1|2262722_2263748_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	60.8	1.4e-63
WP_002334690.1|2263758_2263956_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	82.8	8.6e-23
WP_047937747.1|2263977_2264271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290625.1|2264308_2264446_-	XkdX family protein	NA	NA	NA	NA	NA
WP_147586851.1|2264447_2264894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586852.1|2266327_2267701_-	hypothetical protein	NA	A0A059T661	Listeria_phage	32.9	3.1e-18
WP_147586853.1|2267700_2268744_-	hypothetical protein	NA	Q9T1A5	Listeria_phage	54.1	8.2e-104
WP_002309129.1|2268752_2269586_-|tail	phage tail family protein	tail	Q9T1A6	Listeria_phage	46.1	7.5e-60
WP_147586854.1|2269590_2273073_-	tape measure protein	NA	Q938K3	Temperate_phage	52.6	7.1e-11
WP_002331696.1|2273065_2273647_-	hypothetical protein	NA	Q5YA62	Bacillus_phage	49.0	3.2e-41
WP_002309123.1|2273655_2274105_-	hypothetical protein	NA	B3GW11	Streptococcus_phage	31.5	5.9e-11
WP_002331695.1|2274145_2274505_-	fibronectin type III domain-containing protein	NA	NA	NA	NA	NA
WP_002309120.1|2274485_2274944_-	hypothetical protein	NA	Q5YA64	Bacillus_phage	49.0	2.2e-29
WP_002309118.1|2274940_2275342_-|capsid	phage capsid protein	capsid	Q5YA65	Bacillus_phage	55.7	7.1e-40
WP_002330827.1|2275341_2275668_-|capsid	phage capsid protein	capsid	Q5YA66	Bacillus_phage	54.4	1.1e-27
WP_002309116.1|2275667_2276009_-	hypothetical protein	NA	Q5YA67	Bacillus_phage	60.2	4.0e-36
WP_002309115.1|2276002_2276407_-	hypothetical protein	NA	Q5YA68	Bacillus_phage	61.9	2.1e-39
WP_002309114.1|2276439_2276688_-	Ig domain-containing protein	NA	A5GYM0	Lactococcus_phage	71.8	5.6e-19
WP_002309113.1|2276705_2277566_-	hypothetical protein	NA	U3PDP8	Lactobacillus_phage	64.9	5.3e-101
WP_002309112.1|2277568_2278138_-|capsid	phage capsid protein	capsid	X2CYF9	Lactobacillus_phage	34.7	7.3e-14
WP_002309111.1|2278248_2279412_-|capsid	phage capsid protein	capsid	Q5YA73	Bacillus_phage	59.2	4.6e-132
WP_002309110.1|2279433_2281197_-|portal	phage portal protein	portal	A0A1S5SAH6	Streptococcus_phage	43.3	6.4e-109
WP_002324918.1|2281212_2282502_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0B5CYJ6	Listeria_phage	58.2	6.0e-149
2281591:2281606	attL	CTTTTTGATTTCTTTA	NA	NA	NA	NA
WP_002309108.1|2282485_2283103_-|terminase	terminase small subunit	terminase	A0A2K9V3C4	Faecalibacterium_phage	44.8	2.5e-23
WP_002331693.1|2283133_2283358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002331692.1|2283451_2284192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002331691.1|2284188_2284575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002331690.1|2284591_2285476_-	AAA family ATPase	NA	A0A1X9IGI7	Lactococcus_phage	35.6	1.5e-29
WP_002331689.1|2285626_2286043_-	ArpU family phage transcriptional regulator	NA	C9E2P5	Enterococcus_phage	67.4	2.4e-46
WP_002331688.1|2286118_2286415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002331687.1|2286411_2286615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025479110.1|2286611_2286938_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002313600.1|2286934_2287096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002331685.1|2287110_2287470_-	DUF1064 domain-containing protein	NA	Q4ZDX8	Staphylococcus_virus	47.1	2.0e-17
WP_002331684.1|2287462_2288353_-	DnaD domain protein	NA	NA	NA	NA	NA
WP_002303277.1|2288401_2289292_-	hypothetical protein	NA	D2IYT9	Enterococcus_phage	84.5	6.2e-137
WP_147586855.1|2289385_2290327_-	endonuclease	NA	D2IZK1	Enterococcus_phage	77.0	1.1e-142
WP_002309084.1|2290463_2290649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002319162.1|2290645_2290924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002309080.1|2290929_2291475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301566.1|2291687_2291921_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_147586856.1|2292075_2292477_+	helix-turn-helix domain-containing protein	NA	O03970	Lactobacillus_phage	47.5	2.7e-23
WP_002331680.1|2292452_2292881_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002331679.1|2292945_2293512_+	DUF5067 domain-containing protein	NA	NA	NA	NA	NA
WP_060789025.1|2293634_2294582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_147586857.1|2294759_2295896_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	54.5	5.6e-114
WP_002335737.1|2295988_2297824_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.5	9.9e-20
WP_002291948.1|2297970_2299191_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002291949.1|2299210_2299705_+	nucleoside 2-deoxyribosyltransferase	NA	A0A1W6JK28	Lactococcus_phage	56.5	1.4e-42
WP_002291950.1|2299697_2300369_+	hypothetical protein	NA	NA	NA	NA	NA
2299703:2299718	attR	TAAAGAAATCAAAAAG	NA	NA	NA	NA
WP_002291951.1|2300517_2303127_-	ATP-dependent chaperone ClpB	NA	A0A2I7SAX5	Vibrio_phage	35.0	1.6e-132
>prophage 189
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2309554	2310481	2601809		Brevibacillus_phage(100.0%)	1	NA	NA
WP_002306563.1|2309554_2310481_-	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	41.3	5.1e-33
>prophage 190
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2313670	2317197	2601809		Bacillus_phage(100.0%)	2	NA	NA
WP_002291972.1|2313670_2314507_-	DNA-formamidopyrimidine glycosylase	NA	A0A127AWE5	Bacillus_phage	30.5	1.0e-24
WP_002335740.1|2314551_2317197_-	DNA polymerase I	NA	F8WQ35	Bacillus_phage	35.7	3.0e-54
>prophage 191
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2323860	2324592	2601809		Bacillus_phage(100.0%)	1	NA	NA
WP_002329267.1|2323860_2324592_-	serine/threonine protein phosphatase	NA	A7KV25	Bacillus_phage	29.9	2.6e-16
>prophage 192
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2338245	2339976	2601809		Enterobacteria_phage(100.0%)	1	NA	NA
WP_147586859.1|2338245_2339976_+	ATP-binding protein	NA	Q9EYF3	Enterobacteria_phage	30.2	4.2e-20
>prophage 193
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2343796	2344963	2601809		Pandoravirus(100.0%)	1	NA	NA
WP_002329285.1|2343796_2344963_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	35.0	1.2e-39
>prophage 194
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2348697	2350581	2601809		Herpes_simplex_virus(100.0%)	1	NA	NA
WP_064376042.1|2348697_2350581_-	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	34.6	6.4e-99
>prophage 195
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2354039	2356264	2601809		Moumouvirus(50.0%)	2	NA	NA
WP_002329292.1|2354039_2355050_-	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	24.8	5.4e-12
WP_002329293.1|2355127_2356264_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	A0A218MNE0	uncultured_virus	42.0	2.8e-81
>prophage 196
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2359307	2364334	2601809		Bacillus_phage(33.33%)	4	NA	NA
WP_016853233.1|2359307_2361092_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.8	1.1e-47
WP_002295229.1|2361663_2361792_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_002329297.1|2361794_2363168_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	D0R096	Streptococcus_phage	56.1	1.4e-140
WP_002292050.1|2363278_2364334_-	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.4	1.9e-15
>prophage 197
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2367653	2371944	2601809		Serratia_phage(50.0%)	2	NA	NA
WP_002306506.1|2367653_2369690_-	NAD-dependent DNA ligase LigA	NA	A0A289ZTZ3	Serratia_phage	37.1	6.3e-100
WP_002335752.1|2369706_2371944_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	40.1	9.6e-126
>prophage 198
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2380122	2381373	2601809	protease	Bacillus_virus(100.0%)	1	NA	NA
WP_002292068.1|2380122_2381373_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.5	7.2e-147
>prophage 199
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2384779	2388321	2601809		Salinibacter_virus(50.0%)	4	NA	NA
WP_002314847.1|2384779_2385805_-	signal peptide peptidase SppA	NA	A0A2I6UH21	Salinibacter_virus	28.4	2.7e-19
WP_002297551.1|2385817_2386108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016628983.1|2386085_2386319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002329306.1|2386515_2388321_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	38.2	1.5e-97
>prophage 200
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2398163	2408628	2601809		uncultured_Mediterranean_phage(40.0%)	7	NA	NA
WP_002335754.1|2398163_2400200_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	36.7	2.8e-116
WP_016853228.1|2400563_2401499_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	38.8	1.7e-52
WP_002292101.1|2401532_2402525_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	62.6	9.8e-115
WP_002292102.1|2402527_2403412_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	31.4	5.4e-08
WP_002329316.1|2403548_2404280_-	aspartate racemase	NA	NA	NA	NA	NA
WP_002329317.1|2404283_2405549_-	ATP-grasp protein	NA	NA	NA	NA	NA
WP_002314835.1|2405811_2408628_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.4	3.6e-311
>prophage 201
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2412394	2422240	2601809		Chrysochromulina_ericina_virus(40.0%)	10	NA	NA
WP_002292113.1|2412394_2413132_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	44.7	2.8e-34
WP_002329318.1|2413258_2414197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586862.1|2414199_2414826_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_002292130.1|2415182_2416349_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.7	2.5e-24
WP_002292134.1|2416499_2418329_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	48.8	2.2e-136
WP_002292135.1|2418379_2418943_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_002329320.1|2419036_2420080_-	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_002329321.1|2420312_2421479_-	oxygen-independent coproporphyrinogen III oxidase	NA	A0A0N7G7K6	Chrysochromulina_ericina_virus	33.6	5.0e-09
WP_002329322.1|2421494_2421722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002329323.1|2421973_2422240_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	42.4	5.6e-17
>prophage 202
NZ_CP042834	Enterococcus faecium strain FA3 chromosome, complete genome	2601809	2443305	2597256	2601809	terminase,capsid,holin,protease,tRNA,integrase,transposase,portal,tail,head,plate	Enterococcus_phage(31.58%)	176	2479465:2479482	2539570:2539587
WP_002335766.1|2443305_2445606_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.8	2.1e-19
WP_002314812.1|2445618_2445930_-	YlxQ-related RNA-binding protein	NA	NA	NA	NA	NA
WP_002288501.1|2445926_2446220_-	YlxR family protein	NA	NA	NA	NA	NA
WP_002329343.1|2446241_2447417_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_002308902.1|2447439_2447913_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_002329344.1|2448056_2452409_-	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	40.8	2.5e-21
WP_016853221.1|2452620_2454330_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_002335767.1|2454397_2455666_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_002335768.1|2455826_2456627_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_002340783.1|2456623_2457436_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	45.3	2.2e-24
WP_002293875.1|2457630_2458188_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_002293878.1|2459047_2459929_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_002293880.1|2460024_2460807_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_002316352.1|2461165_2461645_+	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002335770.1|2461864_2462956_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA	NA
WP_002335771.1|2462948_2463734_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_002335772.1|2463912_2465604_-|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	33.1	3.4e-75
WP_002313642.1|2466026_2466974_-	carbamate kinase	NA	NA	NA	NA	NA
WP_002288437.1|2467088_2468108_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_002308888.1|2468198_2469428_-	arginine deiminase	NA	NA	NA	NA	NA
WP_002335481.1|2469891_2471082_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_002329347.1|2471232_2471934_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_002329348.1|2471995_2472685_-	CpsD/CapB family tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.8	3.0e-22
WP_002308884.1|2473060_2474077_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.7	2.1e-59
WP_002308883.1|2474073_2474538_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002329349.1|2474544_2475087_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002329350.1|2475070_2475895_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_002329351.1|2475985_2476966_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	29.1	9.9e-19
WP_002329352.1|2476989_2478474_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_002329353.1|2478485_2479475_-	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	36.8	4.6e-48
2479465:2479482	attL	AAAATTGTCATAAAAAAC	NA	NA	NA	NA
WP_002288457.1|2479721_2479889_+	DUF3042 family protein	NA	NA	NA	NA	NA
WP_147586863.1|2479951_2481763_-	FAD/NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_002314794.1|2481759_2482125_-	DUF488 family protein	NA	NA	NA	NA	NA
WP_002308872.1|2482289_2482685_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_002308870.1|2482702_2483665_-	ROK family glucokinase	NA	NA	NA	NA	NA
WP_002293902.1|2483664_2483877_-	YqgQ family protein	NA	NA	NA	NA	NA
WP_002314793.1|2483897_2484596_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_002338842.1|2484615_2485158_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_002329356.1|2485291_2486296_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002329357.1|2486292_2487282_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_147586864.1|2487278_2488085_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SE00	Indivirus	30.3	1.8e-13
WP_002335775.1|2488250_2489207_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002329360.1|2489279_2489798_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	39.1	9.2e-24
WP_002296119.1|2489885_2490035_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002329361.1|2490262_2490709_+	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_002335776.1|2490789_2492685_-	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y2L7	Organic_Lake_phycodnavirus	26.2	6.0e-20
WP_104889522.1|2493887_2494991_-	HigA family addiction module antidote protein	NA	NA	NA	NA	NA
WP_002341890.1|2494980_2495310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586865.1|2495582_2496608_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	61.3	1.1e-63
WP_016852986.1|2496604_2496829_-|holin	holin	holin	NA	NA	NA	NA
WP_016852987.1|2496825_2497119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002343446.1|2497156_2497294_-	XkdX family protein	NA	NA	NA	NA	NA
WP_147586866.1|2497322_2497700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099036883.1|2497727_2498252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099036884.1|2498244_2499039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586867.1|2499038_2499947_-|plate	BppU family phage baseplate upper protein	plate	A0A1P8BKW9	Lactococcus_phage	25.2	2.4e-11
WP_002343452.1|2499912_2500431_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_147586868.1|2500441_2503330_-	hypothetical protein	NA	D7RWE0	Brochothrix_phage	45.5	2.5e-203
WP_147586908.1|2503329_2504112_-|tail	phage tail protein	tail	D7RWD9	Brochothrix_phage	42.7	2.2e-53
WP_142433915.1|2504129_2506952_-|tail	phage tail tape measure protein	tail	Q9G097	Lactococcus_phage	71.3	5.9e-173
WP_002332769.1|2506968_2507229_-	hypothetical protein	NA	A0A2P1JTY6	Anoxybacillus_phage	50.0	1.6e-05
WP_002293018.1|2507309_2507678_-	hypothetical protein	NA	Q77RZ7	Lactococcus_phage	54.8	8.6e-24
WP_002311463.1|2507723_2508236_-|tail	phage major tail protein, TP901-1 family	tail	D7RWD5	Brochothrix_phage	66.3	7.4e-58
WP_016631462.1|2508246_2508639_-	hypothetical protein	NA	Q77K20	Lactococcus_phage	74.6	4.1e-48
WP_002318275.1|2508638_2508977_-	HK97 gp10 family phage protein	NA	Q77K21	Lactococcus_phage	59.8	3.0e-31
WP_104771577.1|2508960_2509287_-	hypothetical protein	NA	C9E2J7	Enterococcus_phage	70.2	7.1e-38
WP_048946660.1|2509283_2509613_-|head,tail	phage head-tail connector protein	head,tail	A0A0S2MYD5	Enterococcus_phage	75.5	3.8e-39
WP_104771578.1|2509624_2509888_-	hypothetical protein	NA	D2J062	Enterococcus_phage	72.3	6.5e-10
WP_147586869.1|2509905_2510829_-|capsid	phage major capsid protein	capsid	A0A1B1V000	Enterococcus_phage	76.9	2.6e-138
WP_147586870.1|2510841_2511444_-	DUF4355 domain-containing protein	NA	A0A097BY91	Enterococcus_phage	50.2	6.1e-35
WP_147586871.1|2511571_2512498_-|head	phage head morphogenesis protein	head	A0A1L2JXH2	Streptococcus_phage	57.8	6.0e-90
WP_147586872.1|2512502_2514002_-|portal	phage portal protein	portal	A0A097BY86	Enterococcus_phage	78.3	3.1e-221
WP_002323696.1|2514014_2515313_-|terminase	PBSX family phage terminase large subunit	terminase	A0A1B1UZZ1	Enterococcus_phage	88.4	4.9e-231
WP_002311445.1|2515305_2515761_-|terminase	terminase small subunit	terminase	D7RWC4	Brochothrix_phage	41.4	2.7e-19
WP_002322716.1|2515790_2516042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586873.1|2516095_2516323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_070551632.1|2516521_2516710_-	hypothetical protein	NA	E3W8E6	Leuconostoc_phage	49.1	3.1e-06
WP_104674691.1|2517397_2517610_+	KTSC domain-containing protein	NA	NA	NA	NA	NA
WP_147586874.1|2517843_2518158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305391.1|2518572_2519040_-	ArpU family transcriptional regulator	NA	D7RWH7	Brochothrix_phage	28.5	2.4e-07
WP_147586909.1|2519115_2519556_-	transcriptional regulator	NA	D2IYV6	Enterococcus_phage	37.7	9.0e-20
WP_147586875.1|2519585_2519879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_113803617.1|2519878_2520073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_113803618.1|2520075_2520411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586876.1|2520407_2520875_-	DUF1642 domain-containing protein	NA	D2IZL3	Enterococcus_phage	33.5	3.0e-13
WP_147586877.1|2520871_2521264_-	DNA-packaging protein	NA	D2IZL0	Enterococcus_phage	58.9	4.1e-32
WP_147586878.1|2521260_2521785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586879.1|2521983_2522259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586880.1|2522255_2522564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101733641.1|2522560_2522722_-	antitoxin	NA	NA	NA	NA	NA
WP_002353076.1|2522718_2523021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293146.1|2523182_2523452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586881.1|2523463_2524291_-	replisome organizer	NA	A0A0S2MYA8	Enterococcus_phage	54.9	3.9e-40
WP_147586882.1|2524293_2524521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586883.1|2524523_2525210_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.5	4.9e-89
WP_002372705.1|2525215_2525809_-	ERF family protein	NA	Q4ZC23	Staphylococcus_virus	44.6	7.1e-36
WP_147586884.1|2525795_2526143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586885.1|2526318_2527026_-	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	56.9	4.9e-68
WP_073441322.1|2527070_2527550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_147586886.1|2527791_2528058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002321800.1|2528068_2528260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002311730.1|2528551_2528890_+	helix-turn-helix transcriptional regulator	NA	A0A126GGQ7	Streptococcus_phage	46.6	1.7e-18
WP_010730563.1|2528901_2529315_+	ImmA/IrrE family metallo-endopeptidase	NA	D2IZV8	Enterococcus_phage	32.2	2.9e-12
WP_002317583.1|2529328_2529529_+	hypothetical protein	NA	A0A097BY73	Enterococcus_phage	87.9	2.5e-25
WP_147586887.1|2529615_2530521_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_147586888.1|2530658_2531864_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5S7K9	Streptococcus_phage	37.4	9.5e-64
WP_002329364.1|2532144_2532711_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_016853028.1|2532966_2534247_+	DUF1576 domain-containing protein	NA	NA	NA	NA	NA
WP_002335822.1|2534212_2534566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002329367.1|2534655_2535075_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_002335823.1|2535075_2535420_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_002329369.1|2535789_2536386_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	41.1	4.3e-33
WP_002335825.1|2538588_2538801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002329373.1|2539664_2540051_+	YxeA family protein	NA	NA	NA	NA	NA
2539570:2539587	attR	GTTTTTTATGACAATTTT	NA	NA	NA	NA
WP_072538969.1|2540087_2540273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002340789.1|2540571_2540889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586889.1|2542095_2543286_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_002335827.1|2543356_2543611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002308844.1|2543877_2544180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_147586889.1|2544343_2545534_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_002287105.1|2546090_2547065_-	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	5.4e-25
WP_002329375.1|2547227_2547485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033583024.1|2547716_2548130_-	DUF4231 domain-containing protein	NA	NA	NA	NA	NA
WP_147586890.1|2548392_2549554_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.2e-79
WP_002290415.1|2550681_2552028_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_002329378.1|2552139_2553489_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_002335831.1|2553605_2554859_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	4.5e-24
WP_002290410.1|2555436_2556195_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	35.6	2.5e-25
WP_002335832.1|2556210_2557389_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	49.7	3.5e-103
WP_002335833.1|2557617_2559738_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.4	4.4e-221
WP_002290407.1|2559909_2560635_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_002329381.1|2560624_2561134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002290405.1|2561206_2562655_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.0e-19
WP_002290404.1|2562654_2563371_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	6.1e-34
WP_002301594.1|2565384_2565687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104888664.1|2566395_2568147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002334690.1|2569287_2569485_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	82.8	8.6e-23
WP_047937747.1|2569506_2569800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290625.1|2569837_2569975_-	XkdX family protein	NA	NA	NA	NA	NA
WP_147586851.1|2569976_2570423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586852.1|2571856_2573230_-	hypothetical protein	NA	A0A059T661	Listeria_phage	32.9	3.1e-18
WP_147586891.1|2573229_2574249_-	hypothetical protein	NA	Q9T1A5	Listeria_phage	55.9	2.0e-107
WP_147586892.1|2574257_2575088_-|tail	phage tail family protein	tail	A8ASK7	Listeria_phage	41.2	5.8e-52
WP_147586893.1|2575098_2578641_-	tape measure protein	NA	A0A0M5M3L4	Enterococcus_phage	47.4	1.2e-220
WP_002342518.1|2579491_2579683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586894.1|2580128_2580689_-|tail	phage tail protein	tail	V5UQL2	Enterococcus_phage	46.2	4.0e-41
WP_113836625.1|2580704_2581076_-	hypothetical protein	NA	A0A060ANH4	Enterococcus_phage	44.4	2.8e-22
WP_113803695.1|2581072_2581468_-	hypothetical protein	NA	A0A0M5M1E5	Enterococcus_phage	39.8	1.9e-16
WP_002342516.1|2581464_2581800_-|head	phage head closure protein	head	A0A249XUC8	Enterococcus_phage	44.1	2.2e-18
WP_129237541.1|2581803_2582130_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_147586910.1|2582143_2583349_-|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	55.7	1.4e-115
WP_048340719.1|2583351_2584029_-|protease	Clp protease ClpP	protease	E9LUQ2	Lactobacillus_phage	51.0	2.2e-49
WP_002290649.1|2584063_2585284_-|portal	phage portal protein	portal	A0A0U3SQF0	Bacillus_phage	38.8	6.9e-62
WP_002329397.1|2585299_2587090_-|terminase	terminase large subunit	terminase	F8J1B1	Lactobacillus_phage	58.1	1.9e-201
WP_147586895.1|2587076_2587598_-|terminase	phage terminase small subunit P27 family	terminase	A6M947	Geobacillus_virus	34.2	1.4e-16
WP_002290655.1|2587699_2587864_+	YjzC family protein	NA	A0A0A7RTS6	Clostridium_phage	71.7	1.2e-14
WP_025477451.1|2588020_2588338_-	HNH endonuclease	NA	A0A1B1P8D2	Bacillus_phage	39.8	2.0e-13
WP_147586896.1|2588338_2588911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586897.1|2588975_2589203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048340715.1|2589209_2589422_-	hypothetical protein	NA	D2IZF7	Enterococcus_phage	61.7	1.3e-08
WP_073357692.1|2590060_2590336_+	hypothetical protein	NA	A0A2H4JEH2	uncultured_Caudovirales_phage	44.6	3.7e-16
WP_010726604.1|2590780_2591248_-	ArpU family phage transcriptional regulator	NA	NA	NA	NA	NA
WP_002330290.1|2591555_2591807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048340713.1|2591839_2592127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048340712.1|2592126_2592333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048340711.1|2592501_2592720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048340710.1|2592720_2593173_-	DUF1642 domain-containing protein	NA	Q8W5X2	Listeria_phage	47.2	2.4e-20
WP_048340709.1|2593175_2593559_-	hypothetical protein	NA	A0A2H4JBP1	uncultured_Caudovirales_phage	35.2	7.3e-10
WP_047937705.1|2593555_2593873_-	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	36.4	7.9e-10
WP_147586898.1|2593872_2594178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586899.1|2594174_2594336_-	antitoxin	NA	NA	NA	NA	NA
WP_047937476.1|2594332_2594635_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323687.1|2594796_2595066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_147586900.1|2595077_2595827_-	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.7e-31
WP_147586901.1|2595829_2596516_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	70.0	2.9e-89
WP_048340703.1|2596521_2597256_-	DUF1071 domain-containing protein	NA	A0A1X9IGE5	Lactococcus_phage	48.4	2.1e-42
>prophage 1
NZ_CP042833	Enterococcus faecium strain FA3 plasmid unnamed1	209224	102421	155034	209224	integrase,transposase	Bacillus_phage(33.33%)	45	103154:103176	157673:157695
WP_147586738.1|102421_103108_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.2	4.2e-125
103154:103176	attL	ATTTAAAACTTTGCAACAGAACC	NA	NA	NA	NA
WP_147586739.1|103893_105576_+	RNA-directed DNA polymerase	NA	NA	NA	NA	NA
WP_008271463.1|106754_107000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142647661.1|107097_107319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142647659.1|107675_108354_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.2	1.4e-107
WP_002292418.1|111646_112519_-	ROK family protein	NA	NA	NA	NA	NA
WP_047937447.1|112781_114728_-	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
WP_002342372.1|114911_116351_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.1	1.8e-16
WP_002292412.1|116352_117315_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.5	6.8e-20
WP_113836738.1|117619_119046_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	40.2	3.0e-48
WP_094899354.1|119162_119348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002339153.1|120247_120604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002342369.1|120608_120857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002341366.1|121279_121516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002308031.1|121734_121926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_147586740.1|122443_123793_+	replication protein RepR	NA	NA	NA	NA	NA
WP_002307508.1|123836_124031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311028.1|126558_126747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_073506354.1|127193_127403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002307506.1|127471_127894_+	cupin domain-containing protein	NA	Q2I8C5	Bacillus_phage	58.5	2.4e-38
WP_002307505.1|127977_128631_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.0	5.8e-23
WP_002311027.1|128627_129392_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_002318453.1|129466_129580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002342366.1|129793_130036_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_113836602.1|130141_131304_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.2e-79
WP_002295345.1|131419_131929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_147586741.1|132379_132787_-	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A0N9SKD8	Staphylococcus_phage	39.1	8.9e-14
WP_002297441.1|132783_133017_-	addiction module antitoxin	NA	NA	NA	NA	NA
WP_002342364.1|133350_134436_+	tyrosine recombinase XerS	NA	NA	NA	NA	NA
WP_002290356.1|135538_135688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025479641.1|135680_135890_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_002335326.1|137394_138855_-	sucrose phosphorylase	NA	NA	NA	NA	NA
WP_002342361.1|138851_140072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002324534.1|140132_142316_-	alpha-galactosidase	NA	NA	NA	NA	NA
WP_002290368.1|142355_143186_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002290370.1|143197_144070_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002290371.1|144079_145339_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002329911.1|145486_146797_-	alpha-glucosidase/alpha-galactosidase	NA	NA	NA	NA	NA
WP_002342358.1|148647_149913_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002290378.1|150050_151076_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_002290379.1|151320_152592_-	substrate-binding domain-containing protein	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	45.0	4.1e-17
WP_002290380.1|152875_153247_-	glyoxalase	NA	NA	NA	NA	NA
WP_049142163.1|153286_153823_-	glyoxalase	NA	NA	NA	NA	NA
WP_010728589.1|153834_154341_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	44.2	2.5e-13
WP_002290383.1|154479_155034_-|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	46.1	8.6e-36
157673:157695	attR	GGTTCTGTTGCAAAGTTTTAAAT	NA	NA	NA	NA
>prophage 2
NZ_CP042833	Enterococcus faecium strain FA3 plasmid unnamed1	209224	176373	184570	209224	protease,transposase	Escherichia_phage(16.67%)	10	NA	NA
WP_002329890.1|176373_176970_-	recombinase family protein	NA	A0A1J1J8Z4	Escherichia_phage	32.1	3.3e-09
WP_128721742.1|176986_178113_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	53.7	1.9e-74
WP_002395927.1|178198_178429_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016925871.1|178470_178665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293196.1|178810_180925_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.0	1.8e-118
WP_147586747.1|181202_181397_-	helix-turn-helix domain-containing protein	NA	A0A097PBE6	Streptococcus_pyogenes_phage	55.7	2.6e-11
WP_080344806.1|181497_181662_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_147586748.1|181674_181863_+	hypothetical protein	NA	Q9G0C2	Lactococcus_phage	52.5	2.5e-11
WP_002293194.1|181943_182288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002293192.1|183886_184570_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.7	8.7e-38
>prophage 1
NZ_CP042835	Enterococcus faecium strain FA3 plasmid unnamed2	58586	7400	26214	58586	holin,tail,terminase,capsid,head	Enterococcus_phage(61.54%)	18	NA	NA
WP_147586911.1|7400_9167_+|terminase	terminase large subunit	terminase	F8J1B1	Lactobacillus_phage	58.3	3.2e-201
WP_147586910.1|11115_12321_+|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	55.7	1.4e-115
WP_129237541.1|12334_12661_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_147586912.1|12672_12999_+|head	phage head closure protein	head	A0A249XUC8	Enterococcus_phage	42.5	4.4e-16
WP_113803695.1|12995_13391_+	hypothetical protein	NA	X2KQN7	Enterococcus_phage	45.4	3.6e-20
WP_113836625.1|13387_13759_+	hypothetical protein	NA	A0A060ANH4	Enterococcus_phage	44.4	2.8e-22
WP_147586894.1|13774_14335_+|tail	phage tail protein	tail	V5UQL2	Enterococcus_phage	46.2	4.0e-41
WP_002329391.1|14446_14758_+	hypothetical protein	NA	A0A0S2MY76	Enterococcus_phage	44.8	4.0e-14
WP_002342518.1|14781_14973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_147586913.1|14972_19367_+	tape measure protein	NA	A0A0M5M3L4	Enterococcus_phage	45.0	3.0e-224
WP_147586892.1|19377_20208_+|tail	phage tail family protein	tail	Q9T1A6	Listeria_phage	44.8	3.5e-57
WP_147586891.1|20216_21236_+	hypothetical protein	NA	Q9T1A5	Listeria_phage	55.9	2.0e-107
WP_147586852.1|21235_22609_+	hypothetical protein	NA	A0A059T661	Listeria_phage	32.9	3.1e-18
WP_147586851.1|24042_24489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002290625.1|24490_24628_+	XkdX family protein	NA	NA	NA	NA	NA
WP_047937747.1|24665_24959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002334690.1|24980_25178_+|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	82.8	8.6e-23
WP_104886065.1|25188_26214_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	60.8	1.4e-63
>prophage 2
NZ_CP042835	Enterococcus faecium strain FA3 plasmid unnamed2	58586	35798	47188	58586	terminase	Enterococcus_phage(25.0%)	24	NA	NA
WP_099108011.1|35798_36497_+	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	35.1	4.6e-26
WP_147586914.1|36675_37017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048340703.1|37009_37744_+	DUF1071 domain-containing protein	NA	A0A1X9IGE5	Lactococcus_phage	48.4	2.1e-42
WP_147586901.1|37749_38436_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	70.0	2.9e-89
WP_147586900.1|38438_39188_+	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.7e-31
WP_002323687.1|39199_39469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_047937476.1|39630_39933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_147586899.1|39929_40091_+	antitoxin	NA	NA	NA	NA	NA
WP_147586898.1|40087_40393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_047937705.1|40392_40710_+	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	36.4	7.9e-10
WP_048340709.1|40706_41090_+	hypothetical protein	NA	A0A2H4JBP1	uncultured_Caudovirales_phage	35.2	7.3e-10
WP_048340710.1|41092_41545_+	DUF1642 domain-containing protein	NA	Q8W5X2	Listeria_phage	47.2	2.4e-20
WP_048340711.1|41545_41764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048340712.1|41932_42139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048340713.1|42138_42426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330290.1|42458_42710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010726604.1|43017_43485_+	ArpU family phage transcriptional regulator	NA	NA	NA	NA	NA
WP_073357692.1|43929_44205_-	hypothetical protein	NA	A0A1J0MFQ1	Staphylococcus_phage	35.5	1.4e-10
WP_048340715.1|44843_45056_+	hypothetical protein	NA	D2IZF7	Enterococcus_phage	61.7	1.3e-08
WP_147586897.1|45062_45290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_147586896.1|45354_45927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025477451.1|45927_46245_+	HNH endonuclease	NA	A0A1B1P8D2	Bacillus_phage	39.8	2.0e-13
WP_002290655.1|46400_46565_-	YjzC family protein	NA	A0A0A7RTS6	Clostridium_phage	71.7	1.2e-14
WP_147586895.1|46666_47188_+|terminase	phage terminase small subunit P27 family	terminase	A0A0S2GLF2	Bacillus_phage	37.0	2.0e-18
