assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008000875.1_ASM800087v1	NZ_CP042839	Enterococcus sp. DA9 chromosome, complete genome	1	408121-408256	1	CRISPRCasFinder	no		cas14j,csa3,cas3,cas9,cas2,csn2,DEDDh,DinG	Orphan	CTTTGCTCAACCAGTATTGTTCATCATCTATTCTCTTCGTTCATAGTGATTC	52	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,cas3,cas9,cas2,csn2,DEDDh,DinG	NA|278aa|up_9|NZ_CP042839.1_397305_398139_-,NA	NA|278aa|up_9|NZ_CP042839.1_397305_398139_-	NA	NA|579aa|up_8|NZ_CP042839.1_398125_399862_-	pfam10022, DUF2264, Uncharacterized protein conserved in bacteria (DUF2264)	NA|380aa|up_7|NZ_CP042839.1_400242_401382_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_6|NZ_CP042839.1_401560_402274_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|NZ_CP042839.1_402532_403234_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NZ_CP042839.1_403467_405000_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|397aa|up_3|NZ_CP042839.1_405055_406246_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NZ_CP042839.1_406327_407017_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_CP042839.1_407123_407492_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP042839.1_407544_408048_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP042839.1_408457_409147_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP042839.1_409250_409673_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP042839.1_410015_410684_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_CP042839.1_410696_411569_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|367aa|down_4|NZ_CP042839.1_411662_412763_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|294aa|down_5|NZ_CP042839.1_412854_413736_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NZ_CP042839.1_413812_414358_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NZ_CP042839.1_414458_414629_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NZ_CP042839.1_414649_414802_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NZ_CP042839.1_414963_415608_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_008000875.1_ASM800087v1	NZ_CP042839	Enterococcus sp. DA9 chromosome, complete genome	2	1112300-1112665	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas2,csn2	cas14j,csa3,cas3,cas9,cas2,csn2,DEDDh,DinG	Type II-A,Type II-C,Type II-B	GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC,GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC,GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	4,5,5	5	TypeII-A,TypeII-C,TypeII-B	cas14j,csa3,cas3,cas9,cas2,csn2,DEDDh,DinG	NA|68aa|up_9|NZ_CP042839.1_1100455_1100659_-,NA|287aa|up_6|NZ_CP042839.1_1102411_1103272_+,NA|43aa|up_4|NZ_CP042839.1_1105677_1105806_-,NA|66aa|up_3|NZ_CP042839.1_1106121_1106319_+,NA	NA|68aa|up_9|NZ_CP042839.1_1100455_1100659_-	NA	NA|105aa|up_8|NZ_CP042839.1_1100642_1100957_-	pfam14145, YrhK, YrhK-like protein	NA|378aa|up_7|NZ_CP042839.1_1100987_1102121_-	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|287aa|up_6|NZ_CP042839.1_1102411_1103272_+	NA	NA|577aa|up_5|NZ_CP042839.1_1103890_1105621_-	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|43aa|up_4|NZ_CP042839.1_1105677_1105806_-	NA	NA|66aa|up_3|NZ_CP042839.1_1106121_1106319_+	NA	cas9|1341aa|up_2|NZ_CP042839.1_1106327_1110350_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas2|115aa|up_1|NZ_CP042839.1_1111212_1111557_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP042839.1_1111546_1112209_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|122aa|down_0|NZ_CP042839.1_1112836_1113202_+	pfam07784, DUF1622, Protein of unknown function (DUF1622)	NA|122aa|down_1|NZ_CP042839.1_1113198_1113564_+	pfam07784, DUF1622, Protein of unknown function (DUF1622)	NA|476aa|down_2|NZ_CP042839.1_1113724_1115152_-	pfam08280, HTH_Mga, M protein trans-acting positive regulator (MGA) HTH domain	NA|851aa|down_3|NZ_CP042839.1_1115857_1118410_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|480aa|down_4|NZ_CP042839.1_1118416_1119856_-	pfam18333, ssDNA_DBD, Non-canonical single-stranded DNA-binding domain	NA|121aa|down_5|NZ_CP042839.1_1119999_1120362_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|286aa|down_6|NZ_CP042839.1_1120549_1121407_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|304aa|down_7|NZ_CP042839.1_1121526_1122438_+	TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit	NA|549aa|down_8|NZ_CP042839.1_1122444_1124091_+	pfam16957, Mal_decarbox_Al, Malonate decarboxylase, alpha subunit, transporter	NA|100aa|down_9|NZ_CP042839.1_1124192_1124492_+	TIGR03130, malonate_delta, malonate decarboxylase acyl carrier protein
GCF_008000875.1_ASM800087v1	NZ_CP042839	Enterococcus sp. DA9 chromosome, complete genome	3	2383393-2383486	3	CRISPRCasFinder	no		cas14j,csa3,cas3,cas9,cas2,csn2,DEDDh,DinG	Orphan	TGAGGAAGAAGGTGTTGTTTCTGCTGCA	28	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,cas3,cas9,cas2,csn2,DEDDh,DinG	NA|152aa|up_9|NZ_CP042839.1_2372646_2373102_-,NA|349aa|up_3|NZ_CP042839.1_2377856_2378903_-,NA	NA|152aa|up_9|NZ_CP042839.1_2372646_2373102_-	NA	NA|403aa|up_8|NZ_CP042839.1_2373255_2374464_-	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional	NA|111aa|up_7|NZ_CP042839.1_2374571_2374904_-	cd11531, NTP-PPase_BsYpjD, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|292aa|up_6|NZ_CP042839.1_2375051_2375927_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|194aa|up_5|NZ_CP042839.1_2376008_2376590_-	PRK03636, PRK03636, hypothetical protein; Provisional	NA|420aa|up_4|NZ_CP042839.1_2376595_2377855_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|349aa|up_3|NZ_CP042839.1_2377856_2378903_-	NA	NA|437aa|up_2|NZ_CP042839.1_2379651_2380962_-	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|410aa|up_1|NZ_CP042839.1_2381143_2382373_-	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	NA|227aa|up_0|NZ_CP042839.1_2382507_2383188_-	PRK00023, cmk, (d)CMP kinase	NA|468aa|down_0|NZ_CP042839.1_2383937_2385341_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|344aa|down_1|NZ_CP042839.1_2385327_2386359_-	COG4955, COG4955, Uncharacterized protein conserved in bacteria [Function unknown]	NA|74aa|down_2|NZ_CP042839.1_2386389_2386611_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|246aa|down_3|NZ_CP042839.1_2386772_2387510_-	pfam12695, Abhydrolase_5, Alpha/beta hydrolase family	NA|447aa|down_4|NZ_CP042839.1_2387663_2389004_-	PRK07205, PRK07205, hypothetical protein; Provisional	NA|508aa|down_5|NZ_CP042839.1_2389240_2390764_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|204aa|down_6|NZ_CP042839.1_2391143_2391755_-	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|239aa|down_7|NZ_CP042839.1_2392084_2392801_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|192aa|down_8|NZ_CP042839.1_2392801_2393377_-	PRK00135, scpB, segregation and condensation protein B; Reviewed	NA|254aa|down_9|NZ_CP042839.1_2393360_2394122_-	PRK00104, scpA, segregation and condensation protein A; Reviewed
GCF_008000875.1_ASM800087v1	NZ_CP042840	Enterococcus sp. DA9 plasmid unnamed4	1	39821-39949	1	CRISPRCasFinder	no		csa3	Orphan	GGTATGATTTTCATACCCTCTTGA	24	0	0	NA	NA	NA	2	2	Orphan	cas14j,csa3,cas3,cas9,cas2,csn2,DEDDh,DinG	NA|155aa|up_9|NZ_CP042840.1_28986_29451_-,NA|87aa|up_7|NZ_CP042840.1_31564_31825_-,NA|254aa|up_6|NZ_CP042840.1_31837_32599_-,NA|78aa|up_3|NZ_CP042840.1_36486_36720_-,NA|97aa|up_2|NZ_CP042840.1_36911_37202_-,NA|111aa|up_0|NZ_CP042840.1_38180_38513_-,NA|65aa|down_0|NZ_CP042840.1_41728_41923_+	NA|155aa|up_9|NZ_CP042840.1_28986_29451_-	NA	NA|697aa|up_8|NZ_CP042840.1_29477_31568_-	pfam17998, AgI_II_C2, Cell surface antigen I/II C2 terminal domain	NA|87aa|up_7|NZ_CP042840.1_31564_31825_-	NA	NA|254aa|up_6|NZ_CP042840.1_31837_32599_-	NA	NA|251aa|up_5|NZ_CP042840.1_32614_33367_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|224aa|up_4|NZ_CP042840.1_35409_36081_-	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|78aa|up_3|NZ_CP042840.1_36486_36720_-	NA	NA|97aa|up_2|NZ_CP042840.1_36911_37202_-	NA	NA|114aa|up_1|NZ_CP042840.1_37220_37562_-	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|111aa|up_0|NZ_CP042840.1_38180_38513_-	NA	NA|65aa|down_0|NZ_CP042840.1_41728_41923_+	NA	NA|85aa|down_1|NZ_CP042840.1_42666_42921_+	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote	NA|106aa|down_2|NZ_CP042840.1_42921_43239_+	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|229aa|down_3|NZ_CP042840.1_43702_44389_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|19aa|down_4|NZ_CP042840.1_44785_44842_-	NF033385, enterocin_LsbB, LsbB family leaderless bacteriocin	NA|114aa|down_5|NZ_CP042840.1_44908_45250_-	pfam08951, EntA_Immun, Enterocin A Immunity	NA|72aa|down_6|NZ_CP042840.1_45250_45466_-	pfam01721, Bacteriocin_II, Class II bacteriocin	NA|46aa|down_7|NZ_CP042840.1_45689_45827_+	PRK01130, PRK01130, putative N-acetylmannosamine-6-phosphate 2-epimerase	NA|320aa|down_8|NZ_CP042840.1_45908_46868_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|229aa|down_9|NZ_CP042840.1_47824_48511_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
