assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008064895.1_ASM806489v1	NZ_CP042945	Escherichia fergusonii strain ATCC 35471 chromosome, complete genome	1	398974-399123	1,1	CRISPRCasFinder,PILER-CR	no		cas3,DinG,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAACTC,TTTCTAAGCTGCCTGTACGGCAGTGAACTC	30,30	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	cas3,DinG,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	NA,NA	NA|431aa|up_9|NZ_CP042945.1_384249_385542_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP042945.1_385632_386976_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP042945.1_386986_387598_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1282aa|up_6|NZ_CP042945.1_387756_391602_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP042945.1_391736_392231_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP042945.1_392763_393729_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP042945.1_393851_395618_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP042945.1_395618_397340_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP042945.1_397381_398086_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP042945.1_398370_398589_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|760aa|down_0|NZ_CP042945.1_399333_401613_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP042945.1_401643_401964_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|74aa|down_2|NZ_CP042945.1_402286_402508_+	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|649aa|down_3|NZ_CP042945.1_402728_404675_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP042945.1_404671_405787_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|317aa|down_5|NZ_CP042945.1_405948_406899_+	pfam04393, DUF535, Protein of unknown function (DUF535)	NA|553aa|down_6|NZ_CP042945.1_406895_408554_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP042945.1_408975_409671_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|342aa|down_8|NZ_CP042945.1_410175_411201_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|300aa|down_9|NZ_CP042945.1_411539_412439_+	COG2431, COG2431, Predicted membrane protein [Function unknown]
GCF_008064895.1_ASM806489v1	NZ_CP042945	Escherichia fergusonii strain ATCC 35471 chromosome, complete genome	2	1116153-1116791	2,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DinG,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,8	10	TypeI-E	cas3,DinG,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	NA,NA	NA|254aa|up_9|NZ_CP042945.1_1107984_1108746_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP042945.1_1108726_1109776_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP042945.1_1109772_1110252_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP042945.1_1110251_1110962_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP042945.1_1110980_1111292_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP042945.1_1111466_1111790_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP042945.1_1111839_1112445_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP042945.1_1112444_1113872_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP042945.1_1113873_1114782_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP042945.1_1115033_1116071_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP042945.1_1116887_1117181_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP042945.1_1117177_1118101_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP042945.1_1118097_1118748_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP042945.1_1118729_1119476_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP042945.1_1119486_1120542_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP042945.1_1120556_1121093_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP042945.1_1121089_1122652_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|886aa|down_7|NZ_CP042945.1_1122749_1125407_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP042945.1_1125642_1125795_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP042945.1_1126061_1126796_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_008064895.1_ASM806489v1	NZ_CP042945	Escherichia fergusonii strain ATCC 35471 chromosome, complete genome	3	1131751-1132389	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,DinG,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,8	10	TypeI-E	cas3,DinG,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	NA|88aa|up_0|NZ_CP042945.1_1131422_1131686_-,NA	cas7|352aa|up_9|NZ_CP042945.1_1119486_1120542_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|up_8|NZ_CP042945.1_1120556_1121093_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|up_7|NZ_CP042945.1_1121089_1122652_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|886aa|up_6|NZ_CP042945.1_1122749_1125407_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|up_5|NZ_CP042945.1_1125642_1125795_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_4|NZ_CP042945.1_1126061_1126796_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP042945.1_1126869_1128582_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP042945.1_1128581_1130381_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_1|NZ_CP042945.1_1130696_1131062_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|88aa|up_0|NZ_CP042945.1_1131422_1131686_-	NA	NA|224aa|down_0|NZ_CP042945.1_1132727_1133399_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_CP042945.1_1133571_1134174_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_2|NZ_CP042945.1_1134187_1135096_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|NZ_CP042945.1_1135110_1136259_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|291aa|down_4|NZ_CP042945.1_1136264_1137137_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|443aa|down_5|NZ_CP042945.1_1137253_1138582_+	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|433aa|down_6|NZ_CP042945.1_1138636_1139935_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_7|NZ_CP042945.1_1140022_1141660_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_8|NZ_CP042945.1_1141887_1142679_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_9|NZ_CP042945.1_1142749_1143085_-	PRK09907, PRK09907, endoribonuclease MazF
GCF_008064895.1_ASM806489v1	NZ_CP042945	Escherichia fergusonii strain ATCC 35471 chromosome, complete genome	4	1393737-1393872	4	PILER-CR	no		cas3,DinG,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	NA,NA|97aa|down_9|NZ_CP042945.1_1406552_1406843_+	NA|105aa|up_9|NZ_CP042945.1_1385110_1385425_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP042945.1_1385427_1385661_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP042945.1_1385746_1386226_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP042945.1_1386418_1388281_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP042945.1_1388273_1388804_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP042945.1_1388911_1390243_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP042945.1_1390301_1390589_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP042945.1_1390585_1391872_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP042945.1_1391922_1392864_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP042945.1_1392878_1393649_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP042945.1_1394121_1395636_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP042945.1_1395666_1396809_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP042945.1_1396937_1398155_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP042945.1_1398227_1399781_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP042945.1_1399890_1400676_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP042945.1_1400681_1401272_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP042945.1_1401388_1401784_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1075aa|down_7|NZ_CP042945.1_1402044_1405269_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP042945.1_1405286_1406435_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|97aa|down_9|NZ_CP042945.1_1406552_1406843_+	NA
GCF_008064895.1_ASM806489v1	NZ_CP042945	Escherichia fergusonii strain ATCC 35471 chromosome, complete genome	5	3921405-3921493	4	CRISPRCasFinder	no	DEDDh	cas3,DinG,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	Unclear	GGTTGTCCAACGGTTGTCCAACG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	NA|83aa|up_8|NZ_CP042945.1_3915904_3916153_-,NA|157aa|up_7|NZ_CP042945.1_3916337_3916808_-,NA|63aa|up_6|NZ_CP042945.1_3917146_3917335_-,NA|302aa|up_3|NZ_CP042945.1_3918434_3919340_-,NA|73aa|down_5|NZ_CP042945.1_3924326_3924545_+	NA|45aa|up_9|NZ_CP042945.1_3915686_3915821_-	pfam08134, cIII, cIII protein family	NA|83aa|up_8|NZ_CP042945.1_3915904_3916153_-	NA	NA|157aa|up_7|NZ_CP042945.1_3916337_3916808_-	NA	NA|63aa|up_6|NZ_CP042945.1_3917146_3917335_-	NA	NA|67aa|up_5|NZ_CP042945.1_3917394_3917595_-	pfam11058, Ral, Antirestriction protein Ral	NA|127aa|up_4|NZ_CP042945.1_3917673_3918054_-	pfam11438, N36, 36-mer N-terminal peptide of the N protein (N36)	NA|302aa|up_3|NZ_CP042945.1_3918434_3919340_-	NA	NA|238aa|up_2|NZ_CP042945.1_3919426_3920140_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|67aa|up_1|NZ_CP042945.1_3920240_3920441_+	pfam09048, Cro, Cro	NA|93aa|up_0|NZ_CP042945.1_3920559_3920838_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|479aa|down_0|NZ_CP042945.1_3921900_3923337_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|147aa|down_1|NZ_CP042945.1_3923413_3923854_+	pfam05772, NinB, NinB protein	NA|58aa|down_2|NZ_CP042945.1_3923850_3924024_+	pfam17466, NinD, Family of unknown function	NA|59aa|down_3|NZ_CP042945.1_3923990_3924167_+	pfam05322, NinE, NINE Protein	NA|65aa|down_4|NZ_CP042945.1_3924139_3924334_+	pfam05810, NinF, NinF protein	NA|73aa|down_5|NZ_CP042945.1_3924326_3924545_+	NA	NA|97aa|down_6|NZ_CP042945.1_3924545_3924836_+	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|121aa|down_7|NZ_CP042945.1_3924832_3925195_+	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|63aa|down_8|NZ_CP042945.1_3925191_3925380_+	pfam06322, Phage_NinH, Phage NinH protein	NA|208aa|down_9|NZ_CP042945.1_3925376_3926000_+	pfam03589, Antiterm, Antitermination protein
