assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008086305.1_ASM808630v1	NZ_CP043002	Bifidobacterium longum strain BAMA-B05 chromosome, complete genome	1	175156-175239	1	CRISPRCasFinder	no		WYL,DEDDh,cas3,casR	Orphan	TCAACGTACGGTTTCCGCGAAAT	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,casR	NA,NA	NA|455aa|up_9|NZ_CP043002.1_162638_164003_+	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|407aa|up_8|NZ_CP043002.1_164379_165600_-	pfam02595, Gly_kinase, Glycerate kinase family	NA|367aa|up_7|NZ_CP043002.1_165696_166797_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|470aa|up_6|NZ_CP043002.1_166876_168286_-	PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated	NA|627aa|up_5|NZ_CP043002.1_168285_170166_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|87aa|up_4|NZ_CP043002.1_170312_170573_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|263aa|up_3|NZ_CP043002.1_170824_171613_-	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|311aa|up_2|NZ_CP043002.1_171860_172793_-	PRK12334, PRK12334, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|376aa|up_1|NZ_CP043002.1_172956_174084_-	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|207aa|up_0|NZ_CP043002.1_174307_174928_-	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|346aa|down_0|NZ_CP043002.1_175356_176394_+	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|475aa|down_1|NZ_CP043002.1_176529_177954_-	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit	NA|102aa|down_2|NZ_CP043002.1_177953_178259_-	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch	NA|388aa|down_3|NZ_CP043002.1_178274_179438_-	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains	NA|704aa|down_4|NZ_CP043002.1_179778_181890_+	cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases	NA|355aa|down_5|NZ_CP043002.1_181942_183007_-	PRK00089, era, GTPase Era; Reviewed	NA|478aa|down_6|NZ_CP043002.1_183008_184442_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|183aa|down_7|NZ_CP043002.1_184517_185066_-	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|392aa|down_8|NZ_CP043002.1_185055_186231_-	pfam02562, PhoH, PhoH-like protein	NA|113aa|down_9|NZ_CP043002.1_186249_186588_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides
GCF_008086305.1_ASM808630v1	NZ_CP043002	Bifidobacterium longum strain BAMA-B05 chromosome, complete genome	2	933429-933513	2	CRISPRCasFinder	no		WYL,DEDDh,cas3,casR	Orphan	AAGGCTCCCGCTGGCGGGAGCTGTC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,casR	NA,NA|186aa|down_4|NZ_CP043002.1_938086_938644_-	NA|229aa|up_9|NZ_CP043002.1_917612_918299_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|489aa|up_8|NZ_CP043002.1_918420_919887_+	cd08494, PBP2_NikA_DppA_OppA_like_6, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|947aa|up_7|NZ_CP043002.1_919925_922766_+	NF000540, alt_ValS, valine--tRNA ligase	NA|698aa|up_6|NZ_CP043002.1_922877_924971_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|130aa|up_5|NZ_CP043002.1_925092_925482_-	PRK09239, PRK09239, chorismate mutase; Provisional	NA|690aa|up_4|NZ_CP043002.1_925789_927859_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|538aa|up_3|NZ_CP043002.1_928064_929678_-	PRK07208, PRK07208, hypothetical protein; Provisional	NA|607aa|up_2|NZ_CP043002.1_929896_931717_-	cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction	NA|105aa|up_1|NZ_CP043002.1_931923_932238_-	pfam10611, DUF2469, Protein of unknown function (DUF2469)	NA|346aa|up_0|NZ_CP043002.1_932248_933286_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|500aa|down_0|NZ_CP043002.1_933608_935108_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|514aa|down_1|NZ_CP043002.1_935133_936675_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|100aa|down_2|NZ_CP043002.1_936678_936978_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|283aa|down_3|NZ_CP043002.1_937144_937993_-	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU	NA|186aa|down_4|NZ_CP043002.1_938086_938644_-	NA	NA|468aa|down_5|NZ_CP043002.1_938712_940116_-	pfam02646, RmuC, RmuC family	NA|94aa|down_6|NZ_CP043002.1_940179_940461_-	COG1937, COG1937, Uncharacterized protein conserved in bacteria [Function unknown]	NA|903aa|down_7|NZ_CP043002.1_940572_943281_+	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|245aa|down_8|NZ_CP043002.1_943364_944099_-	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|560aa|down_9|NZ_CP043002.1_944332_946012_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
GCF_008086305.1_ASM808630v1	NZ_CP043002	Bifidobacterium longum strain BAMA-B05 chromosome, complete genome	3	1051377-1051745	3	CRISPRCasFinder	no		WYL,DEDDh,cas3,casR	Orphan	TGCGGTTGATTCCACGGGTCACCG	24	0	0	NA	NA	NA	6	6	Orphan	WYL,DEDDh,cas3,casR	NA|238aa|up_6|NZ_CP043002.1_1043487_1044201_-,NA|201aa|down_5|NZ_CP043002.1_1057593_1058196_-	NA|805aa|up_9|NZ_CP043002.1_1036792_1039207_+	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|639aa|up_8|NZ_CP043002.1_1039278_1041195_-	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated	NA|473aa|up_7|NZ_CP043002.1_1041686_1043105_-	cd07383, MPP_Dcr2, Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain	NA|238aa|up_6|NZ_CP043002.1_1043487_1044201_-	NA	NA|365aa|up_5|NZ_CP043002.1_1044275_1045370_+	PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed	NA|189aa|up_4|NZ_CP043002.1_1045451_1046018_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|255aa|up_3|NZ_CP043002.1_1046073_1046838_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|428aa|up_2|NZ_CP043002.1_1047198_1048482_-	pfam13635, DUF4143, Domain of unknown function (DUF4143)	NA|378aa|up_1|NZ_CP043002.1_1049368_1050502_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|201aa|up_0|NZ_CP043002.1_1050498_1051101_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|200aa|down_0|NZ_CP043002.1_1054234_1054834_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|377aa|down_1|NZ_CP043002.1_1055031_1056162_-	PRK11914, PRK11914, diacylglycerol kinase; Reviewed	NA|129aa|down_2|NZ_CP043002.1_1056210_1056597_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|129aa|down_3|NZ_CP043002.1_1056638_1057025_-	pfam07811, TadE, TadE-like protein	NA|132aa|down_4|NZ_CP043002.1_1057021_1057417_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|201aa|down_5|NZ_CP043002.1_1057593_1058196_-	NA	NA|231aa|down_6|NZ_CP043002.1_1058192_1058885_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|356aa|down_7|NZ_CP043002.1_1058848_1059916_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|317aa|down_8|NZ_CP043002.1_1059922_1060873_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|242aa|down_9|NZ_CP043002.1_1061095_1061821_-	PRK10847, PRK10847, DedA family protein
GCF_008086305.1_ASM808630v1	NZ_CP043002	Bifidobacterium longum strain BAMA-B05 chromosome, complete genome	4	1589965-1590050	4	CRISPRCasFinder	no		WYL,DEDDh,cas3,casR	Orphan	CTCCGCGCCCGCACGCTCAGGGC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,casR	NA|86aa|up_5|NZ_CP043002.1_1579749_1580007_-,NA|274aa|up_1|NZ_CP043002.1_1587156_1587978_-,NA|193aa|down_4|NZ_CP043002.1_1597103_1597682_+,NA|30aa|down_5|NZ_CP043002.1_1597873_1597963_+,NA|116aa|down_8|NZ_CP043002.1_1599933_1600281_-	NA|133aa|up_9|NZ_CP043002.1_1576643_1577042_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|332aa|up_8|NZ_CP043002.1_1577122_1578118_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|181aa|up_7|NZ_CP043002.1_1578217_1578760_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|304aa|up_6|NZ_CP043002.1_1578841_1579753_-	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|86aa|up_5|NZ_CP043002.1_1579749_1580007_-	NA	NA|727aa|up_4|NZ_CP043002.1_1579974_1582155_+	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|267aa|up_3|NZ_CP043002.1_1582361_1583162_+	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|348aa|up_2|NZ_CP043002.1_1586072_1587116_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|274aa|up_1|NZ_CP043002.1_1587156_1587978_-	NA	NA|356aa|up_0|NZ_CP043002.1_1588092_1589160_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|158aa|down_0|NZ_CP043002.1_1592508_1592982_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|388aa|down_1|NZ_CP043002.1_1592983_1594147_+	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|375aa|down_2|NZ_CP043002.1_1594244_1595369_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|513aa|down_3|NZ_CP043002.1_1595383_1596922_-	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|193aa|down_4|NZ_CP043002.1_1597103_1597682_+	NA	NA|30aa|down_5|NZ_CP043002.1_1597873_1597963_+	NA	NA|233aa|down_6|NZ_CP043002.1_1598115_1598814_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|329aa|down_7|NZ_CP043002.1_1598944_1599931_-	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|116aa|down_8|NZ_CP043002.1_1599933_1600281_-	NA	NA|539aa|down_9|NZ_CP043002.1_1600467_1602084_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed
GCF_008086305.1_ASM808630v1	NZ_CP043002	Bifidobacterium longum strain BAMA-B05 chromosome, complete genome	5	2075210-2075290	5	CRISPRCasFinder	no		WYL,DEDDh,cas3,casR	Orphan	ATATGAGACGGCTTCACTGTGCG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,casR	NA|327aa|up_0|NZ_CP043002.1_2073457_2074438_-,NA|107aa|down_5|NZ_CP043002.1_2084612_2084933_+	NA|375aa|up_9|NZ_CP043002.1_2061269_2062394_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|271aa|up_8|NZ_CP043002.1_2062731_2063544_+	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|428aa|up_7|NZ_CP043002.1_2063599_2064883_+	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|545aa|up_6|NZ_CP043002.1_2065162_2066797_+	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|364aa|up_5|NZ_CP043002.1_2066963_2068055_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|390aa|up_4|NZ_CP043002.1_2068056_2069226_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|570aa|up_3|NZ_CP043002.1_2069229_2070939_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|174aa|up_2|NZ_CP043002.1_2070988_2071510_-	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|532aa|up_1|NZ_CP043002.1_2071558_2073154_-	cd01087, Prolidase, Prolidase	NA|327aa|up_0|NZ_CP043002.1_2073457_2074438_-	NA	NA|532aa|down_0|NZ_CP043002.1_2075563_2077159_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|1226aa|down_1|NZ_CP043002.1_2077219_2080897_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|332aa|down_2|NZ_CP043002.1_2081015_2082011_-	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain	NA|518aa|down_3|NZ_CP043002.1_2082132_2083686_-	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional	NA|270aa|down_4|NZ_CP043002.1_2083803_2084613_+	PRK09652, PRK09652, RNA polymerase sigma factor RpoE; Provisional	NA|107aa|down_5|NZ_CP043002.1_2084612_2084933_+	NA	NA|315aa|down_6|NZ_CP043002.1_2085198_2086143_-	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|319aa|down_7|NZ_CP043002.1_2086267_2087224_-	cd09022, Aldose_epim_Ec_YihR, Aldose 1-epimerase, similar to Escherichia coli YihR	NA|353aa|down_8|NZ_CP043002.1_2087448_2088507_+	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|170aa|down_9|NZ_CP043002.1_2088546_2089056_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins
