The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP043222	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT chromosome, complete genome	4766173	6039	27257	4766173	integrase,holin,terminase,lysis	Enterobacteria_phage(48.65%)	41	15047:15059	27990:28002
WP_060644711.1|6039_7452_-|terminase	PBSX family phage terminase large subunit	terminase	Q716H3	Shigella_phage	99.1	5.4e-276
WP_000542583.1|7893_8073_-	hypothetical protein	NA	Q9AZ02	Salmonella_phage	93.2	2.1e-23
WP_021571708.1|8074_8317_-	DUF2560 family protein	NA	A5VW77	Enterobacteria_phage	98.8	3.7e-36
WP_001058931.1|8564_9050_-	GIY-YIG nuclease family protein	NA	C6ZR70	Salmonella_phage	100.0	8.5e-88
WP_001543881.1|9254_9407_-	hypothetical protein	NA	C6ZR68	Salmonella_phage	100.0	1.2e-21
WP_060644715.1|9394_9832_-|lysis	lysis protein	lysis	A5VW79	Enterobacteria_phage	93.1	2.3e-68
WP_001167371.1|9828_10266_-	lysozyme	NA	Q5G8R3	Enterobacteria_phage	97.9	2.2e-74
WP_000738703.1|10249_10576_-|holin	phage holin, lambda family	holin	Q5G8R5	Enterobacteria_phage	100.0	1.7e-52
WP_060644719.1|10696_10888_-	hypothetical protein	NA	M1E3N9	Enterobacteria_phage	96.4	4.7e-26
WP_001047571.1|11019_11784_-	antitermination protein	NA	Q5G8R6	Enterobacteria_phage	97.6	1.4e-140
WP_000219137.1|11780_11960_-	hypothetical protein	NA	A0A1V0E5I7	Salmonella_phage	96.6	2.1e-23
WP_000149880.1|11940_12144_-	protein ninH	NA	A0A1V0E5I5	Salmonella_phage	100.0	5.5e-33
WP_000036321.1|12140_12365_-	hypothetical protein	NA	I6R0N9	Salmonella_phage	100.0	6.3e-38
WP_060647190.1|12361_12967_-	recombination protein NinG	NA	G9L693	Escherichia_phage	94.5	4.2e-92
WP_072210018.1|12959_13304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060635833.1|13269_13473_-	protein ninF	NA	A0A220NRM2	Escherichia_phage	93.1	2.8e-24
WP_060635832.1|13465_13798_-	DUF2591 domain-containing protein	NA	A0A075B8G3	Enterobacteria_phage	95.5	6.2e-58
WP_024240377.1|13800_13977_-	NinE family protein	NA	K7PH28	Enterobacteria_phage	100.0	6.1e-28
WP_045133258.1|13973_14384_-	recombination protein NinB	NA	K7PK24	Enterobacteria_phage	99.3	1.2e-71
WP_000344554.1|14355_14718_-	hypothetical protein	NA	A0A2I6PIG0	Escherichia_phage	67.9	4.4e-33
WP_001579629.1|14735_14942_-	hypothetical protein	NA	G8C7M4	Escherichia_phage	94.1	1.9e-25
WP_060635831.1|15018_16899_-	DNA replication protein	NA	K7PK08	Enterobacteria_phage	99.2	0.0e+00
15047:15059	attL	CACGACTCGTCAT	NA	NA	NA	NA
WP_000166207.1|17836_17983_-	DUF2740 family protein	NA	Q687G5	Enterobacteria_phage	100.0	1.1e-19
WP_000424167.1|18017_18296_-	transcriptional regulator	NA	Q5G8T2	Enterobacteria_phage	100.0	2.5e-44
WP_000276884.1|18402_18588_-	hypothetical protein	NA	Q5G8T3	Enterobacteria_phage	100.0	5.4e-27
WP_001095984.1|18668_19319_+	LexA family transcriptional regulator	NA	B1B6L9	Salmonella_phage	100.0	5.4e-122
WP_024139125.1|19657_19990_+	hypothetical protein	NA	A0A1R3Y5R1	Salmonella_virus	93.6	4.3e-51
WP_000392424.1|19998_20448_+	hypothetical protein	NA	I6RSN8	Salmonella_phage	89.3	8.7e-71
WP_023242793.1|20526_20997_+	hypothetical protein	NA	A0A1I9LJN4	Stx_converting_phage	98.7	3.1e-87
WP_072210017.1|21086_21350_+	hypothetical protein	NA	K7PGS9	Enterobacteria_phage	100.0	9.0e-44
WP_052942523.1|21616_22324_+	recombinase	NA	K7PKU3	Enterobacteria_phage	88.5	1.6e-119
WP_001253476.1|22323_22608_+	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
WP_052942524.1|22654_22951_+	DUF2856 family protein	NA	A5VWB0	Enterobacteria_phage	98.0	1.1e-50
WP_072104056.1|22961_23129_+	DUF2737 family protein	NA	Q716F2	Shigella_phage	96.4	1.2e-22
WP_000118152.1|23125_23425_+	hypothetical protein	NA	Q716F3	Shigella_phage	100.0	1.5e-58
WP_052942525.1|23426_24017_+	ead/Ea22-like family protein	NA	K7P6J7	Enterobacteria_phage	50.4	1.6e-48
WP_000661511.1|24020_24320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000206020.1|24357_24630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001531074.1|24738_24981_+	DUF551 domain-containing protein	NA	NA	NA	NA	NA
WP_001060562.1|24977_25655_+	DUF551 domain-containing protein	NA	A0A0N7KZV3	Escherichia_phage	29.6	6.9e-19
WP_001531071.1|26093_27257_+|integrase	site-specific integrase	integrase	A0A0M4R586	Salmonella_phage	96.1	1.9e-218
27990:28002	attR	CACGACTCGTCAT	NA	NA	NA	NA
>prophage 2
NZ_CP043222	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT chromosome, complete genome	4766173	237256	280866	4766173	head,portal,lysis,tail,integrase,holin,terminase	Enterobacteria_phage(36.21%)	64	236606:236645	276982:277021
236606:236645	attL	CGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
WP_126790267.1|237256_237532_+	GtrA family protein	NA	A0A1R3Y5Q2	Salmonella_virus	96.7	1.6e-43
WP_024143049.1|237603_239526_+	acyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	97.2	0.0e+00
WP_065314658.1|239561_241529_-	hypothetical protein	NA	T1SBJ2	Salmonella_phage	96.6	3.8e-304
WP_023277599.1|241707_242586_-	antirepressor protein ant	NA	I6R977	Salmonella_phage	78.9	1.1e-96
WP_072101348.1|242648_242822_-	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_032178570.1|242910_243147_+	Arc family DNA-binding protein	NA	G0ZNE9	Cronobacter_phage	60.5	1.7e-17
WP_052941096.1|243143_243353_+	hypothetical protein	NA	I6R975	Salmonella_phage	97.1	1.3e-29
WP_000151196.1|243327_243513_-	hypothetical protein	NA	I6RSG3	Salmonella_phage	100.0	1.1e-08
WP_000275950.1|243780_244101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060647138.1|244109_246113_-	hypothetical protein	NA	A0A2I7QW93	Vibrio_phage	36.9	2.6e-98
WP_060647136.1|246112_247519_-	DNA transfer protein	NA	I6RSG0	Salmonella_phage	56.1	4.9e-128
WP_000964882.1|247528_248221_-	DNA transfer protein	NA	G5DA80	Enterobacteria_phage	100.0	9.2e-112
WP_052862072.1|248223_248679_-	DUF2824 family protein	NA	B8K1I4	Salmonella_phage	98.7	6.7e-87
WP_103035127.1|248678_249317_-|tail	phage tail protein	tail	A8CGD2	Salmonella_phage	98.6	4.5e-89
WP_060635838.1|249320_250739_-	hypothetical protein	NA	A0A075B8I2	Enterobacteria_phage	96.6	3.1e-271
WP_060635837.1|250747_251230_-	packaged DNA stabilization protein p27	NA	Q9AYZ5	Salmonella_phage	99.4	4.2e-87
WP_000375637.1|251204_251390_-	hypothetical protein	NA	Q716G9	Shigella_phage	100.0	2.7e-26
WP_060635836.1|251432_252704_-|head	head protein	head	Q9AYZ7	Salmonella_phage	95.7	1.8e-230
WP_000426729.1|252715_253600_-	hypothetical protein	NA	Q716H1	Shigella_phage	99.3	1.8e-144
WP_060644709.1|253613_255740_-|portal	portal protein	portal	Q9AYZ9	Salmonella_phage	99.4	0.0e+00
WP_060644711.1|255742_257155_-|terminase	PBSX family phage terminase large subunit	terminase	Q716H3	Shigella_phage	99.1	5.4e-276
WP_000190002.1|257151_257574_-	hypothetical protein	NA	Q716H4	Shigella_phage	99.3	3.6e-74
WP_000542583.1|257597_257777_-	hypothetical protein	NA	Q9AZ02	Salmonella_phage	93.2	2.1e-23
WP_021571708.1|257778_258021_-	DUF2560 family protein	NA	A5VW77	Enterobacteria_phage	98.8	3.7e-36
WP_001058931.1|258268_258754_-	GIY-YIG nuclease family protein	NA	C6ZR70	Salmonella_phage	100.0	8.5e-88
WP_001543881.1|258958_259111_-	hypothetical protein	NA	C6ZR68	Salmonella_phage	100.0	1.2e-21
WP_060644715.1|259098_259536_-|lysis	lysis protein	lysis	A5VW79	Enterobacteria_phage	93.1	2.3e-68
WP_001167371.1|259532_259970_-	lysozyme	NA	Q5G8R3	Enterobacteria_phage	97.9	2.2e-74
WP_000738703.1|259953_260280_-|holin	phage holin, lambda family	holin	Q5G8R5	Enterobacteria_phage	100.0	1.7e-52
WP_060644719.1|260400_260592_-	hypothetical protein	NA	M1E3N9	Enterobacteria_phage	96.4	4.7e-26
WP_001047571.1|260723_261488_-	antitermination protein	NA	Q5G8R6	Enterobacteria_phage	97.6	1.4e-140
WP_000219137.1|261484_261664_-	hypothetical protein	NA	A0A1V0E5I7	Salmonella_phage	96.6	2.1e-23
WP_000149880.1|261644_261848_-	protein ninH	NA	A0A1V0E5I5	Salmonella_phage	100.0	5.5e-33
WP_000036321.1|261844_262069_-	hypothetical protein	NA	I6R0N9	Salmonella_phage	100.0	6.3e-38
WP_060647190.1|262065_262671_-	recombination protein NinG	NA	G9L693	Escherichia_phage	94.5	4.2e-92
WP_072210018.1|262663_263008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060635833.1|262973_263177_-	protein ninF	NA	A0A220NRM2	Escherichia_phage	93.1	2.8e-24
WP_060635832.1|263169_263502_-	DUF2591 domain-containing protein	NA	A0A075B8G3	Enterobacteria_phage	95.5	6.2e-58
WP_024240377.1|263504_263681_-	NinE family protein	NA	K7PH28	Enterobacteria_phage	100.0	6.1e-28
WP_045133258.1|263677_264088_-	recombination protein NinB	NA	K7PK24	Enterobacteria_phage	99.3	1.2e-71
WP_000344554.1|264059_264422_-	hypothetical protein	NA	A0A2I6PIG0	Escherichia_phage	67.9	4.4e-33
WP_001579629.1|264439_264646_-	hypothetical protein	NA	G8C7M4	Escherichia_phage	94.1	1.9e-25
WP_060635831.1|264722_266603_-	DNA replication protein	NA	K7PK08	Enterobacteria_phage	99.2	0.0e+00
WP_000166207.1|267540_267687_-	DUF2740 family protein	NA	Q687G5	Enterobacteria_phage	100.0	1.1e-19
WP_000424167.1|267721_268000_-	transcriptional regulator	NA	Q5G8T2	Enterobacteria_phage	100.0	2.5e-44
WP_000276884.1|268106_268292_-	hypothetical protein	NA	Q5G8T3	Enterobacteria_phage	100.0	5.4e-27
WP_001095984.1|268372_269023_+	LexA family transcriptional regulator	NA	B1B6L9	Salmonella_phage	100.0	5.4e-122
WP_024139125.1|269361_269694_+	hypothetical protein	NA	A0A1R3Y5R1	Salmonella_virus	93.6	4.3e-51
WP_000392424.1|269702_270152_+	hypothetical protein	NA	I6RSN8	Salmonella_phage	89.3	8.7e-71
WP_023242793.1|270230_270701_+	hypothetical protein	NA	A0A1I9LJN4	Stx_converting_phage	98.7	3.1e-87
WP_072210017.1|270790_271054_+	hypothetical protein	NA	K7PGS9	Enterobacteria_phage	100.0	9.0e-44
WP_052942523.1|271320_272028_+	recombinase	NA	K7PKU3	Enterobacteria_phage	88.5	1.6e-119
WP_001253476.1|272027_272312_+	sigma-70 family RNA polymerase sigma factor	NA	Q76H41	Enterobacteria_phage	100.0	1.4e-45
WP_052942524.1|272358_272655_+	DUF2856 family protein	NA	A5VWB0	Enterobacteria_phage	98.0	1.1e-50
WP_072104056.1|272665_272833_+	DUF2737 family protein	NA	Q716F2	Shigella_phage	96.4	1.2e-22
WP_000118152.1|272829_273129_+	hypothetical protein	NA	Q716F3	Shigella_phage	100.0	1.5e-58
WP_052942525.1|273130_273721_+	ead/Ea22-like family protein	NA	K7P6J7	Enterobacteria_phage	50.4	1.6e-48
WP_000661511.1|273724_274024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000206020.1|274061_274334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001531074.1|274442_274685_+	DUF551 domain-containing protein	NA	NA	NA	NA	NA
WP_001060562.1|274681_275359_+	DUF551 domain-containing protein	NA	A0A0N7KZV3	Escherichia_phage	29.6	6.9e-19
WP_060647241.1|275797_276961_+|integrase	site-specific integrase	integrase	A0A2H5BFK7	Salmonella_phage	99.2	1.5e-228
WP_000893218.1|277166_278417_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	48.2	4.7e-98
276982:277021	attR	CGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
WP_060647239.1|279813_280866_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.5	1.3e-112
>prophage 3
NZ_CP043222	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT chromosome, complete genome	4766173	718130	768750	4766173	transposase,tRNA	Mycobacterium_phage(30.0%)	43	NA	NA
WP_001563101.1|718130_720965_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2K9L260	Tupanvirus	26.1	3.8e-79
WP_000042736.1|720964_721465_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_000047269.1|721619_722069_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_001166423.1|722071_723022_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA	NA
WP_023214725.1|723221_724424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000741408.1|724439_725360_+	ribonucleoside hydrolase RihC	NA	NA	NA	NA	NA
WP_000377415.1|725381_726068_-	response regulator	NA	NA	NA	NA	NA
WP_023215404.1|726069_727689_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000444883.1|727823_729125_-	oxalacetate decarboxylase subunit beta	NA	NA	NA	NA	NA
WP_103035134.1|729137_730907_-	sodium-extruding oxaloacetate decarboxylase subunit alpha	NA	NA	NA	NA	NA
WP_001001155.1|730922_731162_-	oxaloacetate decarboxylase subunit gamma	NA	NA	NA	NA	NA
WP_000183606.1|731320_732661_-	citrate/sodium symporter CitN	NA	NA	NA	NA	NA
WP_000934791.1|732905_733949_+	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA	NA
WP_000691461.1|733978_734272_+	citrate lyase acyl carrier protein	NA	NA	NA	NA	NA
WP_001247811.1|734268_735138_+	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA	NA
WP_000665573.1|735148_736669_+	citrate lyase subunit alpha	NA	NA	NA	NA	NA
WP_000679050.1|736668_737220_+	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA	NA
WP_001103238.1|737197_738106_+	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA	NA
WP_000544045.1|738285_739107_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_000597270.1|740144_741293_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	33.6	6.8e-51
WP_001126310.1|741311_744539_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_000333324.1|744812_745208_+	carnitine metabolism transcriptional regulator CaiF	NA	NA	NA	NA	NA
WP_000122863.1|745284_745881_-	carnitine operon protein CaiE	NA	NA	NA	NA	NA
WP_000004385.1|745990_746776_-	crotonobetainyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023137176.1|746829_748383_-	crotonobetaine/carnitine-CoA ligase	NA	Q75ZG1	Hepacivirus	24.8	6.8e-30
WP_001016212.1|748445_749663_-	L-carnitine CoA-transferase	NA	NA	NA	NA	NA
WP_000347134.1|749774_750917_-	crotonobetainyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_000787073.1|750951_752469_-	L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA	A0A2I7QNT1	Vibrio_phage	22.2	1.4e-08
WP_000692185.1|752949_753720_+	electron transfer flavoprotein FixA	NA	NA	NA	NA	NA
WP_001032188.1|753735_754677_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_001287763.1|754726_756013_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000203736.1|756009_756297_+	ferredoxin-like protein FixX	NA	NA	NA	NA	NA
WP_001187057.1|756443_757784_+	MFS transporter	NA	NA	NA	NA	NA
WP_001172089.1|757872_758103_+	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_000768937.1|758396_758819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011805383.1|758984_760238_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	48.2	5.6e-99
WP_032728035.1|760709_761726_-|transposase	IS30-like element IS1394 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	37.5	3.5e-51
WP_052905207.1|761903_762410_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_011805383.1|762496_763750_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	48.2	5.6e-99
WP_032728035.1|764221_765238_-|transposase	IS30-like element IS1394 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	37.5	3.5e-51
WP_052905207.1|765415_765922_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_011805383.1|766008_767262_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	48.2	5.6e-99
WP_032728035.1|767733_768750_-|transposase	IS30-like element IS1394 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	37.5	3.5e-51
>prophage 4
NZ_CP043222	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT chromosome, complete genome	4766173	2052801	2108769	4766173	head,capsid,portal,tail,integrase,holin,tRNA,transposase,terminase	Cronobacter_phage(61.36%)	64	2046868:2046888	2094846:2094866
2046868:2046888	attL	GATAAGCGCAGCGCCATCAGG	NA	NA	NA	NA
WP_000478462.1|2052801_2054370_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.5	2.2e-12
WP_000983434.1|2054366_2055014_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000213763.1|2055245_2056013_+	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_001145216.1|2056223_2057261_-|integrase	tyrosine-type recombinase/integrase	integrase	F1BUS9	Erwinia_phage	64.7	6.6e-122
WP_000568369.1|2057264_2057831_-	hypothetical protein	NA	Q4ZA70	Staphylococcus_virus	35.0	3.0e-20
WP_000102874.1|2057847_2058429_-	phage repressor protein CI	NA	F1BUS8	Erwinia_phage	39.8	2.5e-33
WP_001247709.1|2058564_2058786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460877.1|2058816_2059320_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	72.5	3.5e-60
WP_000643375.1|2059329_2059557_+	DUF2724 domain-containing protein	NA	NA	NA	NA	NA
WP_000996838.1|2059546_2059972_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	50.4	7.6e-24
WP_000022787.1|2059971_2060373_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.2	3.2e-48
WP_071601531.1|2060518_2060695_+	DUF2732 family protein	NA	NA	NA	NA	NA
WP_000422609.1|2060685_2061282_+	3'-5' exonuclease	NA	A0A1S6L012	Salmonella_phage	72.3	3.8e-74
WP_000153510.1|2061278_2061608_+	DUF3850 domain-containing protein	NA	Q2P9X4	Enterobacteria_phage	44.0	2.5e-11
WP_000279405.1|2061597_2062458_+	DNA adenine methylase	NA	F1BUN1	Cronobacter_phage	82.7	1.3e-131
WP_000170880.1|2062454_2064476_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.8	9.4e-298
WP_000353141.1|2064595_2064802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001552031.1|2064775_2065099_-	ogr/Delta-like zinc finger family protein	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
WP_000038207.1|2065095_2066157_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	77.1	5.1e-162
WP_001151944.1|2066153_2067929_-	hypothetical protein	NA	F1BUM5	Cronobacter_phage	83.1	2.2e-290
WP_000018798.1|2068089_2068890_+|capsid	phage capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	54.8	3.2e-76
WP_000550496.1|2068951_2069974_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.2	1.1e-158
WP_001218534.1|2069977_2070682_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	67.4	1.0e-86
WP_000398492.1|2070685_2070880_+	hypothetical protein	NA	Q8W634	Enterobacteria_phage	58.6	3.3e-11
WP_000447490.1|2070940_2071429_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	81.3	4.3e-63
WP_000084220.1|2071425_2071932_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.8	5.2e-64
WP_000560081.1|2071928_2072636_+	hypothetical protein	NA	F1BUL6	Cronobacter_phage	76.5	3.4e-101
WP_000220205.1|2072632_2073760_+	DUF2586 domain-containing protein	NA	F1BUL5	Cronobacter_phage	83.7	3.3e-175
WP_000166743.1|2073756_2074212_+	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	72.2	1.5e-57
WP_001154425.1|2074221_2074515_+|holin	holin	holin	C7BGD7	Burkholderia_phage	46.2	1.3e-14
WP_000175560.1|2074511_2074853_+	M15 family metallopeptidase	NA	F1BUL3	Cronobacter_phage	91.1	2.2e-50
WP_000376374.1|2074852_2075185_+	hypothetical protein	NA	F1BUL2	Cronobacter_phage	70.0	2.0e-35
WP_001270304.1|2075156_2075345_+	hypothetical protein	NA	F1BUL1	Cronobacter_phage	79.0	1.5e-21
WP_000411340.1|2075331_2075589_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	63.4	3.6e-21
WP_000811089.1|2075776_2077747_+|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	67.4	1.6e-254
WP_001002797.1|2077743_2078073_+	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	72.4	3.8e-39
WP_000136922.1|2078069_2079254_+	hypothetical protein	NA	F1BUK6	Cronobacter_phage	78.1	2.0e-178
WP_001001827.1|2079246_2079834_+	hypothetical protein	NA	F1BUK5	Cronobacter_phage	81.5	2.1e-88
WP_000083767.1|2079843_2081856_+|tail	tail protein	tail	F1BUK3	Cronobacter_phage	81.2	2.1e-148
WP_001215677.1|2081858_2082389_+|tail	tail fiber assembly protein	tail	A0A1S6KZZ1	Salmonella_phage	32.4	4.4e-13
WP_000267951.1|2082378_2083104_+	hypothetical protein	NA	F1BUK1	Cronobacter_phage	56.4	6.6e-68
WP_000200796.1|2083075_2083621_+	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	72.0	1.4e-59
WP_052945080.1|2083623_2085324_+	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	81.3	1.3e-223
WP_071530430.1|2085482_2085704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000237776.1|2086496_2087003_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
WP_001519776.1|2087126_2088974_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
WP_000918865.1|2089123_2090869_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	2.1e-72
WP_001144069.1|2091104_2091320_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_001264396.1|2091547_2092561_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.5	6.3e-109
WP_001272785.1|2092783_2093401_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_000355776.1|2093507_2093867_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
WP_001281933.1|2093964_2094786_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000708456.1|2094889_2096131_-	multifunctional CCA addition/repair protein	NA	A0A0F6YPT7	Sinorhizobium_phage	51.4	2.5e-91
2094846:2094866	attR	GATAAGCGCAGCGCCATCAGG	NA	NA	NA	NA
WP_001125344.1|2096193_2096808_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_000046225.1|2097049_2098351_+	inorganic triphosphatase	NA	NA	NA	NA	NA
WP_000188297.1|2098468_2101312_+	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA	NA
WP_000867682.1|2101359_2102793_+	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	29.0	8.8e-40
WP_106086611.1|2102952_2103171_-	type I toxin-antitoxin system Ibs family toxin	NA	NA	NA	NA	NA
WP_000342873.1|2103251_2104931_-	flotillin family protein	NA	NA	NA	NA	NA
WP_060647178.1|2104949_2105570_-	YqiJ family protein	NA	NA	NA	NA	NA
WP_000928927.1|2105827_2106037_+	cell surface composition regulator GlgS	NA	NA	NA	NA	NA
WP_000566826.1|2106110_2106407_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_001076978.1|2106843_2107497_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	43.8	1.6e-44
WP_086011183.1|2107513_2108769_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.5	2.2e-18
>prophage 5
NZ_CP043222	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT chromosome, complete genome	4766173	3095031	3104203	4766173	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000569166.1|3095031_3095979_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
WP_000824858.1|3095962_3096694_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001261696.1|3096674_3096782_-	protein YohO	NA	NA	NA	NA	NA
WP_001240418.1|3096841_3097573_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272850.1|3097795_3099481_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_000598637.1|3099477_3100197_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|3100243_3100711_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001221798.1|3100767_3101298_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703136.1|3101469_3101928_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
WP_000195345.1|3102169_3104203_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 6
NZ_CP043222	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT chromosome, complete genome	4766173	3171432	3181939	4766173		Enterobacteria_phage(37.5%)	10	NA	NA
WP_001111835.1|3171432_3172836_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
WP_000981469.1|3173013_3173907_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697850.1|3174283_3175369_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	9.4e-103
WP_001023663.1|3175368_3176268_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.3	1.4e-30
WP_024132299.1|3176315_3177194_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.2	3.5e-108
WP_000973712.1|3177194_3177746_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	2.9e-52
WP_000018225.1|3177751_3178726_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648783.1|3178741_3179515_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000565904.1|3179519_3180599_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	2.3e-16
WP_000126349.1|3180625_3181939_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 7
NZ_CP043222	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT chromosome, complete genome	4766173	3568943	3575605	4766173		Salmonella_phage(28.57%)	10	NA	NA
WP_000230462.1|3568943_3569750_-	peptide ABC transporter ATP-binding protein SapF	NA	G3M9Y6	Bacillus_virus	27.4	4.6e-14
WP_001128869.1|3569751_3570744_-	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA	NA
WP_001146150.1|3570743_3571634_-	peptide ABC transporter permease SapC	NA	NA	NA	NA	NA
WP_001605109.1|3571770_3572157_+	DUF4102 domain-containing protein	NA	K7PLT1	Enterobacteria_phage	59.4	1.6e-28
WP_001605114.1|3572456_3573179_-	hypothetical protein	NA	A0A0P0ZCT1	Stx2-converting_phage	38.9	4.3e-35
WP_001096568.1|3573649_3573832_+	hypothetical protein	NA	S4TSR3	Salmonella_phage	77.6	1.0e-22
WP_001605117.1|3574081_3574222_+	hypothetical protein	NA	A0A0U2KD26	Escherichia_phage	77.1	6.5e-09
WP_001605118.1|3574260_3574560_+	putative pertussis-like toxin subunit	NA	A0A0U2KD26	Escherichia_phage	54.3	3.2e-13
WP_000727927.1|3574486_3574912_+	subtilase	NA	NA	NA	NA	NA
WP_077946977.1|3575290_3575605_+	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	85.1	2.8e-39
>prophage 8
NZ_CP043222	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT chromosome, complete genome	4766173	4045552	4099330	4766173	head,capsid,portal,tail,integrase,holin,plate,tRNA,terminase,protease	Salmonella_phage(52.46%)	69	4052530:4052545	4095231:4095246
WP_000497451.1|4045552_4045792_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
WP_001529135.1|4046664_4047474_+	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001277616.1|4047546_4047924_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_000158843.1|4048071_4048614_-	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_000733630.1|4048806_4049535_-	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	52.5	1.6e-61
WP_000275700.1|4049551_4049965_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	38.6	4.2e-19
WP_000917280.1|4051011_4052136_-	type III secretion system effector SopF	NA	NA	NA	NA	NA
4052530:4052545	attL	TAATAAAAACGGGAAC	NA	NA	NA	NA
WP_148910460.1|4052581_4052794_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.6	9.6e-20
WP_000334550.1|4053047_4053719_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.3	1.8e-80
WP_023171144.1|4053711_4054980_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	96.0	7.3e-240
WP_023171145.1|4054982_4055402_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	59.1	3.8e-36
WP_077909836.1|4055738_4055951_-	hypothetical protein	NA	A0A1B0V844	Salmonella_phage	62.9	9.3e-07
WP_023171148.1|4056075_4057209_+	acyltransferase	NA	A0A2H4JA46	uncultured_Caudovirales_phage	33.0	1.6e-36
WP_023171149.1|4057246_4057459_-	hypothetical protein	NA	F1BUK1	Cronobacter_phage	60.9	1.6e-11
WP_094445164.1|4057448_4058054_-|tail	tail fiber assembly protein	tail	Q8HAB3	Salmonella_phage	93.1	1.4e-100
WP_023244258.1|4058023_4059277_-	hypothetical protein	NA	A0A1S6KZZ0	Salmonella_phage	95.6	4.6e-178
WP_023171039.1|4059263_4059851_-	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	99.0	1.4e-113
WP_023215805.1|4059853_4060933_-|plate	baseplate J/gp47 family protein	plate	A0A192Y6E4	Salmonella_phage	99.2	1.2e-203
WP_000605051.1|4060925_4061339_-	hypothetical protein	NA	A0A192Y6D0	Salmonella_phage	100.0	3.1e-75
WP_001273648.1|4061343_4061877_-|plate	phage baseplate assembly protein	plate	A0A192Y8K5	Salmonella_phage	100.0	8.4e-97
WP_001066631.1|4061876_4062935_-	hypothetical protein	NA	A0A192Y7L7	Salmonella_phage	99.7	6.6e-202
WP_023171041.1|4062931_4064272_-|tail	tail/DNA circulation protein	tail	A0A192Y5U9	Salmonella_phage	99.3	1.1e-249
WP_023171042.1|4064305_4066234_-|tail	phage tail tape measure protein	tail	A0A192Y6D8	Salmonella_phage	99.1	0.0e+00
WP_000588852.1|4066318_4066645_-|tail	phage tail assembly protein	tail	Q8HAC3	Salmonella_phage	99.1	2.3e-52
WP_000515952.1|4066641_4066998_-|tail	tail protein	tail	A0A192Y8K0	Salmonella_phage	100.0	2.6e-62
WP_060646850.1|4066997_4068494_-|tail	phage tail protein	tail	Q8HAC5	Salmonella_phage	99.2	1.2e-276
WP_000497755.1|4068483_4068648_-	DUF2635 domain-containing protein	NA	Q8HAC6	Salmonella_phage	96.3	8.4e-24
WP_023171043.1|4069210_4069723_-	hypothetical protein	NA	Q8HAC8	Salmonella_phage	87.1	6.2e-81
WP_023171044.1|4069694_4070108_-|head	phage head closure protein	head	A0A192Y6C2	Salmonella_phage	74.8	6.0e-50
WP_000886224.1|4070119_4070443_-|head,tail	phage gp6-like head-tail connector protein	head,tail	K7PKT4	Enterobacteria_phage	57.4	2.2e-31
WP_023171045.1|4070442_4070667_-	hypothetical protein	NA	K7PHI6	Enterobacteria_phage	66.0	2.5e-10
WP_023171046.1|4070710_4071928_-|capsid	phage major capsid protein	capsid	K7PM57	Enterobacteria_phage	88.9	4.6e-199
WP_023171047.1|4071937_4072786_-|protease	Clp protease ClpP	protease	K7PH05	Enterobacteria_phage	88.2	7.5e-132
WP_023171048.1|4072799_4074104_-|portal	phage portal protein	portal	K7PJU5	Enterobacteria_phage	86.6	1.9e-219
WP_077909829.1|4074103_4075846_-|terminase	terminase large subunit	terminase	A0A0U2C138	Paracoccus_phage	44.5	5.3e-140
WP_023171050.1|4075799_4076264_-|terminase	phage terminase small subunit P27 family	terminase	Q9B019	Phage_GMSE-1	62.1	1.7e-48
WP_024147208.1|4076396_4076741_-	HNH endonuclease	NA	K7P7P6	Enterobacteria_phage	73.9	8.8e-47
WP_001070544.1|4076875_4077103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000495545.1|4077199_4077577_-	hypothetical protein	NA	Q6UAR9	Klebsiella_phage	68.5	2.2e-43
WP_023171052.1|4077619_4078159_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	49.3	1.3e-07
WP_023171053.1|4078155_4078770_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	93.1	1.4e-108
WP_000250465.1|4078769_4079051_-|holin	phage holin family protein	holin	A0A0U2SHD1	Escherichia_phage	51.1	8.2e-19
WP_023171055.1|4079037_4079424_-	hypothetical protein	NA	A0A192Y8P2	Salmonella_phage	92.2	8.9e-56
WP_023171056.1|4079574_4080498_+	hypothetical protein	NA	A0A1B5FPA3	Escherichia_phage	56.4	1.6e-42
WP_023171057.1|4080604_4081435_-	antitermination protein	NA	A0A1B5FPA5	Escherichia_phage	43.3	5.0e-56
WP_024147207.1|4081465_4082455_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	98.8	1.5e-192
WP_023171059.1|4082462_4083323_-	KilA-N domain-containing protein	NA	Q8HA92	Salmonella_phage	98.6	2.7e-161
WP_023171060.1|4083339_4083729_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A192Y8N5	Salmonella_phage	97.7	7.1e-69
WP_023171061.1|4083725_4084619_-	phage N-6-adenine-methyltransferase	NA	Q8HA94	Salmonella_phage	93.9	8.7e-163
WP_023171062.1|4084618_4085101_-	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	98.8	1.6e-86
WP_000104924.1|4085102_4086062_-	helix-turn-helix domain-containing protein	NA	U5P0A0	Shigella_phage	80.9	1.6e-117
WP_000620702.1|4086058_4086283_-	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
WP_023244168.1|4086279_4087422_-	antirepressor	NA	A0A1C9IHV9	Salmonella_phage	87.4	6.3e-182
WP_000509731.1|4087418_4087973_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
WP_001191666.1|4088001_4088226_-	helix-turn-helix transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
WP_071591199.1|4088164_4088350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001020640.1|4088323_4089019_+	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	99.6	4.6e-127
WP_000997190.1|4089833_4090205_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	1.1e-63
WP_023171064.1|4090262_4091090_+	YfdQ family protein	NA	Q8HAA2	Salmonella_phage	98.5	4.1e-151
WP_000008351.1|4091226_4091766_+	hypothetical protein	NA	A0A192Y8M4	Salmonella_phage	100.0	2.6e-98
WP_100514545.1|4091893_4092568_+	ead/Ea22-like family protein	NA	A0A0F6R7P8	Escherichia_coli_O157_typing_phage	94.3	5.4e-40
WP_023171066.1|4092567_4093041_+	class I SAM-dependent methyltransferase	NA	H9C170	Pectobacterium_phage	78.8	2.1e-67
WP_000089141.1|4093801_4094038_+	excisionase	NA	NA	NA	NA	NA
WP_000741325.1|4094027_4095170_+|integrase	tyrosine-type recombinase/integrase	integrase	O21929	Phage_21	80.3	8.2e-174
WP_000444509.1|4095283_4096534_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	6.7e-20
4095231:4095246	attR	TAATAAAAACGGGAAC	NA	NA	NA	NA
WP_001249416.1|4096705_4097371_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
WP_000825956.1|4097367_4097697_+	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_000476063.1|4097708_4098170_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_060647024.1|4098223_4099330_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
>prophage 9
NZ_CP043222	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT chromosome, complete genome	4766173	4250551	4293916	4766173	lysis,tail,integrase,terminase,protease	Salmonella_phage(48.0%)	65	4250283:4250342	4292758:4292835
4250283:4250342	attL	TAACCCCTTGTTTAATCTGGCGGAAGCGCAGAGATTCGAACTCTGGAACCCTTTCGGGTC	NA	NA	NA	NA
WP_001670820.1|4250551_4250818_+	hypothetical protein	NA	A0A0M3ULK3	Salmonella_phage	78.4	7.3e-33
WP_000503667.1|4250874_4251522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001670723.1|4251564_4251762_-	helix-turn-helix domain-containing protein	NA	S4TTF2	Salmonella_phage	97.0	1.4e-09
WP_127913510.1|4251944_4252190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000033280.1|4252387_4252780_-	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	37.4	8.5e-14
WP_000370530.1|4252889_4253498_-	DUF4376 domain-containing protein	NA	S5MBX6	Escherichia_phage	44.7	1.1e-31
WP_071786695.1|4253560_4253746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000421108.1|4253994_4254513_-|tail	tail fiber assembly protein	tail	A0A0U2QV64	Escherichia_phage	53.8	2.0e-47
WP_060647010.1|4254527_4256060_-	hypothetical protein	NA	S4TP62	Salmonella_phage	66.5	1.8e-128
WP_000049939.1|4256059_4256740_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	96.0	5.5e-125
WP_001197089.1|4256736_4257936_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	96.7	5.5e-213
WP_060647008.1|4257936_4258290_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	94.9	8.7e-58
WP_000301078.1|4258289_4259042_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	69.8	9.7e-91
WP_000931859.1|4259160_4259616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000819157.1|4259699_4260032_-	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	69.1	1.7e-23
WP_000081749.1|4260028_4261096_-	hypothetical protein	NA	A0A0M4QX01	Salmonella_phage	91.5	2.0e-174
WP_060647006.1|4261098_4261401_-	hypothetical protein	NA	A0A0M4R5B7	Salmonella_phage	99.0	1.6e-52
WP_060647005.1|4261400_4261976_-	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	99.0	5.9e-96
WP_000990866.1|4261975_4263985_-	transglycosylase SLT domain-containing protein	NA	A0A0M4REK7	Salmonella_phage	95.2	0.0e+00
WP_024131618.1|4263974_4264151_-	hypothetical protein	NA	A0A2H4J1A2	uncultured_Caudovirales_phage	72.9	4.7e-12
WP_000389049.1|4264162_4264615_-	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	78.7	1.3e-61
WP_000257262.1|4264618_4265059_-	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	73.3	2.5e-54
WP_023972347.1|4265070_4266216_-	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.8	5.9e-164
WP_060647002.1|4266219_4266765_-	hypothetical protein	NA	A0A2H4J1A0	uncultured_Caudovirales_phage	50.8	5.7e-48
WP_001526520.1|4266757_4267162_-	hypothetical protein	NA	A0A2H4J1A4	uncultured_Caudovirales_phage	69.2	4.1e-43
WP_023972349.1|4267161_4267671_-	hypothetical protein	NA	A0A2H4J488	uncultured_Caudovirales_phage	40.7	8.5e-22
WP_023972350.1|4267667_4268078_-	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	57.4	2.5e-32
WP_023972351.1|4268046_4268415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060647000.1|4268464_4269412_-	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	54.5	3.6e-98
WP_023972353.1|4269423_4269927_-	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	47.0	5.2e-32
WP_023972354.1|4269938_4271216_-	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	42.8	1.6e-77
WP_001526527.1|4271267_4271801_-	hypothetical protein	NA	A0A0M4REK0	Salmonella_phage	56.9	5.5e-48
WP_023972355.1|4271871_4273341_-	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	55.7	1.1e-157
WP_060646998.1|4273380_4274799_-|terminase	PBSX family phage terminase large subunit	terminase	A0A077KAW0	Edwardsiella_phage	69.7	3.4e-185
WP_023972357.1|4274764_4275517_-	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	55.2	2.6e-11
WP_024156461.1|4275580_4275769_-	DUF826 domain-containing protein	NA	NA	NA	NA	NA
WP_023972360.1|4276081_4276549_-|lysis	lysis protein	lysis	S4TNN7	Salmonella_phage	80.6	2.5e-60
WP_023972361.1|4276545_4277457_-	site-specific DNA-methyltransferase	NA	A0A088FRS2	Escherichia_phage	53.0	3.2e-88
WP_060646996.1|4277453_4277951_-	lysozyme	NA	A0A1R3Y5W5	Salmonella_virus	63.4	6.3e-54
WP_001526513.1|4277928_4278231_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000658037.1|4278433_4278622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060646994.1|4279014_4279593_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	52.0	2.4e-44
WP_060646992.1|4279879_4280476_-	DUF1367 family protein	NA	H9C173	Pectobacterium_phage	73.2	4.2e-81
WP_000474096.1|4280544_4280736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001129735.1|4280919_4281258_-	hypothetical protein	NA	A0A193GYX4	Enterobacter_phage	86.6	3.7e-50
WP_000180135.1|4281257_4281428_-	hypothetical protein	NA	I6S1S6	Salmonella_phage	87.5	6.3e-06
WP_001037052.1|4281424_4282027_-	adenine methylase	NA	G9L699	Escherichia_phage	87.3	1.7e-98
WP_000918617.1|4282019_4282268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000130738.1|4282271_4282952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000074839.1|4282989_4284378_-	DNA helicase	NA	Q76H51	Enterobacteria_phage	47.1	1.2e-105
WP_000063056.1|4284374_4285355_-	helix-turn-helix domain-containing protein	NA	H9C164	Pectobacterium_phage	80.6	2.3e-44
WP_001195066.1|4285357_4285582_-	hypothetical protein	NA	H9C163	Pectobacterium_phage	44.7	1.0e-08
WP_001643782.1|4285604_4286051_-	hypothetical protein	NA	H9C162	Pectobacterium_phage	50.4	5.5e-25
WP_001526889.1|4285985_4286201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001670726.1|4286115_4286349_-	helix-turn-helix transcriptional regulator	NA	A0A0U2S629	Escherichia_phage	48.6	6.2e-12
WP_000467661.1|4286447_4286912_+	helix-turn-helix domain-containing protein	NA	A0A0U2QW76	Escherichia_phage	51.7	2.7e-35
WP_000387662.1|4287596_4287920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001192832.1|4287927_4288173_+	hypothetical protein	NA	A0A1B1W282	Salmonella_phage	53.8	3.5e-13
WP_060646990.1|4288202_4290476_+	hypothetical protein	NA	H9C157	Pectobacterium_phage	35.0	6.1e-104
WP_000205292.1|4290472_4291027_+	siphovirus Gp157 family protein	NA	H9C156	Pectobacterium_phage	59.3	1.3e-47
WP_000916251.1|4291029_4291212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024131616.1|4291261_4291459_+	hypothetical protein	NA	H9C154	Pectobacterium_phage	58.5	8.3e-10
WP_000196402.1|4291424_4291649_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_000533596.1|4291649_4292669_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A192Y7M7	Salmonella_phage	53.5	1.2e-91
WP_000374046.1|4293256_4293916_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
4292758:4292835	attR	TAACCCCTTGTTTAATCTGGCGGAAGCGCAGAGATTCGAACTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCGG	NA	NA	NA	NA
>prophage 10
NZ_CP043222	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT chromosome, complete genome	4766173	4738221	4766017	4766173	holin,head,portal,lysis	Salmonella_phage(38.89%)	37	NA	NA
WP_053259004.1|4738221_4740219_-	hypothetical protein	NA	Q76H13	Enterobacteria_phage	87.4	0.0e+00
WP_053259008.1|4740218_4741541_-	DNA transfer protein	NA	A0A220NR03	Salmonella_phage	97.3	3.1e-233
WP_023206221.1|4741583_4742273_-	hypothetical protein	NA	B9UDK9	Salmonella_phage	99.6	2.3e-102
WP_023206220.1|4742275_4742731_-	DUF2824 family protein	NA	E7C9U3	Salmonella_phage	99.3	5.2e-87
WP_060635839.1|4742730_4743369_-	hypothetical protein	NA	A8CGD2	Salmonella_phage	99.1	1.6e-89
WP_060635838.1|4743372_4744791_-	hypothetical protein	NA	A0A075B8I2	Enterobacteria_phage	96.6	3.1e-271
WP_060635837.1|4744799_4745282_-	packaged DNA stabilization protein p27	NA	Q9AYZ5	Salmonella_phage	99.4	4.2e-87
WP_000375637.1|4745256_4745442_-	hypothetical protein	NA	Q716G9	Shigella_phage	100.0	2.7e-26
WP_060635836.1|4745484_4746756_-|head	head protein	head	Q9AYZ7	Salmonella_phage	95.7	1.8e-230
WP_000426729.1|4746767_4747652_-	hypothetical protein	NA	Q716H1	Shigella_phage	99.3	1.8e-144
WP_060644709.1|4747665_4749792_-|portal	portal protein	portal	Q9AYZ9	Salmonella_phage	99.4	0.0e+00
WP_000190002.1|4751202_4751625_-	hypothetical protein	NA	Q716H4	Shigella_phage	99.3	3.6e-74
WP_000542583.1|4751648_4751828_-	hypothetical protein	NA	Q9AZ02	Salmonella_phage	93.2	2.1e-23
WP_021571708.1|4751829_4752072_-	DUF2560 family protein	NA	A5VW77	Enterobacteria_phage	98.8	3.7e-36
WP_001058931.1|4752319_4752805_-	GIY-YIG nuclease family protein	NA	C6ZR70	Salmonella_phage	100.0	8.5e-88
WP_001543881.1|4753009_4753162_-	hypothetical protein	NA	C6ZR68	Salmonella_phage	100.0	1.2e-21
WP_060644715.1|4753149_4753587_-|lysis	lysis protein	lysis	A5VW79	Enterobacteria_phage	93.1	2.3e-68
WP_001167371.1|4753583_4754021_-	lysozyme	NA	Q5G8R3	Enterobacteria_phage	97.9	2.2e-74
WP_000738703.1|4754004_4754331_-|holin	phage holin, lambda family	holin	Q5G8R5	Enterobacteria_phage	100.0	1.7e-52
WP_060644719.1|4754451_4754643_-	hypothetical protein	NA	M1E3N9	Enterobacteria_phage	96.4	4.7e-26
WP_000219137.1|4755534_4755714_-	hypothetical protein	NA	A0A1V0E5I7	Salmonella_phage	96.6	2.1e-23
WP_000149880.1|4755694_4755898_-	protein ninH	NA	A0A1V0E5I5	Salmonella_phage	100.0	5.5e-33
WP_000036321.1|4755894_4756119_-	hypothetical protein	NA	I6R0N9	Salmonella_phage	100.0	6.3e-38
WP_060647190.1|4756115_4756721_-	recombination protein NinG	NA	G9L693	Escherichia_phage	94.5	4.2e-92
WP_072210018.1|4756713_4757058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060635833.1|4757023_4757227_-	protein ninF	NA	A0A220NRM2	Escherichia_phage	93.1	2.8e-24
WP_060635832.1|4757219_4757552_-	DUF2591 domain-containing protein	NA	A0A075B8G3	Enterobacteria_phage	95.5	6.2e-58
WP_024240377.1|4757554_4757731_-	NinE family protein	NA	K7PH28	Enterobacteria_phage	100.0	6.1e-28
WP_045133258.1|4757727_4758138_-	recombination protein NinB	NA	K7PK24	Enterobacteria_phage	99.3	1.2e-71
WP_000344554.1|4758109_4758472_-	hypothetical protein	NA	A0A2I6PIG0	Escherichia_phage	67.9	4.4e-33
WP_001579629.1|4758489_4758696_-	hypothetical protein	NA	G8C7M4	Escherichia_phage	94.1	1.9e-25
WP_000166207.1|4761586_4761733_-	DUF2740 family protein	NA	Q687G5	Enterobacteria_phage	100.0	1.1e-19
WP_148910465.1|4762491_4762794_+	helix-turn-helix domain-containing protein	NA	B1B6L9	Salmonella_phage	100.0	2.6e-42
WP_148910466.1|4764262_4764793_+	hypothetical protein	NA	A0A1I9LJN4	Stx_converting_phage	98.7	1.7e-86
WP_148910467.1|4765368_4765596_+	hypothetical protein	NA	Q716E7	Shigella_phage	78.5	4.0e-24
WP_148910469.1|4765526_4765769_+	hypothetical protein	NA	G5DA86	Enterobacteria_phage	100.0	2.0e-21
WP_148910468.1|4765678_4766017_+	hypothetical protein	NA	Q8VNQ0	Enterobacteria_phage	72.1	8.6e-39
>prophage 1
NZ_CP043223	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence	257405	180427	190053	257405	transposase	Stx2-converting_phage(37.5%)	8	NA	NA
WP_001682306.1|180427_181351_+|transposase	IS5 family transposase	transposase	Q1MVF0	Enterobacteria_phage	94.5	5.4e-168
WP_001000406.1|181667_183203_-|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	88.1	4.8e-262
WP_000609174.1|183252_183600_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	95.7	2.7e-59
WP_001201739.1|183596_183980_-	IS66 family insertion sequence hypothetical protein	NA	A0A0P0ZCV4	Stx2-converting_phage	36.3	4.1e-13
WP_148910474.1|184375_186055_-	DUF4942 domain-containing protein	NA	J9Q747	Salmonella_phage	31.0	3.4e-67
WP_011805383.1|186047_187301_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	48.2	5.6e-99
WP_000114859.1|187707_188871_-	hypothetical protein	NA	A0A1P8DTT7	Salmonella_phage	32.1	1.3e-17
WP_001121575.1|189240_190053_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1C9II58	Salmonella_phage	38.5	3.0e-45
