assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008152505.1_ASM815250v1	NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	1	342239-342328	1	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	TTTTGACACGGACGTCAAAAACT	23	1	2	342262-342305|342262-342305	NZ_CP042813.1_231612-231569|NZ_CP042813.1_231902-231859	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA,NA|62aa|down_4|NZ_CP042813.1_352247_352433_+,NA|171aa|down_9|NZ_CP042813.1_359343_359856_-	NA|229aa|up_9|NZ_CP042813.1_331613_332300_+	cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|177aa|up_8|NZ_CP042813.1_332296_332827_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|73aa|up_7|NZ_CP042813.1_332832_333051_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|121aa|up_6|NZ_CP042813.1_333204_333567_+	COG1734, DksA, DnaK suppressor protein [Signal transduction mechanisms]	NA|455aa|up_5|NZ_CP042813.1_333595_334960_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|172aa|up_4|NZ_CP042813.1_335035_335551_-	smart00388, HisKA, His Kinase A (phosphoacceptor) domain	NA|623aa|up_3|NZ_CP042813.1_335553_337422_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|336aa|up_2|NZ_CP042813.1_337421_338429_-	TIGR00651, Phosphate_acetyltransferase, phosphate acetyltransferase	NA|256aa|up_1|NZ_CP042813.1_339044_339812_-	cd18103, SpoU-like_RlmB, SAM-dependent rRNA methylase related to RlmB	NA|469aa|up_0|NZ_CP042813.1_339815_341222_-	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	NA|502aa|down_0|NZ_CP042813.1_342381_343887_-	PRK07107, PRK07107, IMP dehydrogenase	NA|201aa|down_1|NZ_CP042813.1_344708_345311_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|572aa|down_2|NZ_CP042813.1_345349_347065_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|577aa|down_3|NZ_CP042813.1_347064_348795_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|62aa|down_4|NZ_CP042813.1_352247_352433_+	NA	NA|413aa|down_5|NZ_CP042813.1_352685_353924_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|251aa|down_6|NZ_CP042813.1_354688_355441_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|348aa|down_7|NZ_CP042813.1_355437_356481_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|335aa|down_8|NZ_CP042813.1_356477_357482_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|171aa|down_9|NZ_CP042813.1_359343_359856_-	NA
GCF_008152505.1_ASM815250v1	NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	2	352331-352480	2	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	TTTTGCCATGGACGGCAAAATTATGCCGTGCGGTGGTTCCACGCAG	46	1	1	352377-352434	NZ_CP042813.1_2630428-2630485	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA,NA|171aa|down_4|NZ_CP042813.1_359343_359856_-,NA|679aa|down_8|NZ_CP042813.1_364479_366516_-	NA|455aa|up_9|NZ_CP042813.1_333595_334960_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|172aa|up_8|NZ_CP042813.1_335035_335551_-	smart00388, HisKA, His Kinase A (phosphoacceptor) domain	NA|623aa|up_7|NZ_CP042813.1_335553_337422_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|336aa|up_6|NZ_CP042813.1_337421_338429_-	TIGR00651, Phosphate_acetyltransferase, phosphate acetyltransferase	NA|256aa|up_5|NZ_CP042813.1_339044_339812_-	cd18103, SpoU-like_RlmB, SAM-dependent rRNA methylase related to RlmB	NA|469aa|up_4|NZ_CP042813.1_339815_341222_-	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	NA|502aa|up_3|NZ_CP042813.1_342381_343887_-	PRK07107, PRK07107, IMP dehydrogenase	NA|201aa|up_2|NZ_CP042813.1_344708_345311_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|572aa|up_1|NZ_CP042813.1_345349_347065_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|577aa|up_0|NZ_CP042813.1_347064_348795_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|413aa|down_0|NZ_CP042813.1_352685_353924_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|251aa|down_1|NZ_CP042813.1_354688_355441_-	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|348aa|down_2|NZ_CP042813.1_355437_356481_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|335aa|down_3|NZ_CP042813.1_356477_357482_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|171aa|down_4|NZ_CP042813.1_359343_359856_-	NA	NA|242aa|down_5|NZ_CP042813.1_359864_360590_-	pfam13551, HTH_29, Winged helix-turn helix	NA|602aa|down_6|NZ_CP042813.1_360967_362773_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|569aa|down_7|NZ_CP042813.1_362786_364493_-	COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]	NA|679aa|down_8|NZ_CP042813.1_364479_366516_-	NA	NA|453aa|down_9|NZ_CP042813.1_366582_367941_-	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]
GCF_008152505.1_ASM815250v1	NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	3	645787-645896	3	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	AGGCTTTTAGTTCCTGCCATAGATTAAAAAGTATT	35	0	0	NA	NA	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA,NA|68aa|down_2|NZ_CP042813.1_649335_649539_-,NA|82aa|down_4|NZ_CP042813.1_652551_652797_+,NA|77aa|down_6|NZ_CP042813.1_656002_656233_-,NA|75aa|down_9|NZ_CP042813.1_658481_658706_+	NA|225aa|up_9|NZ_CP042813.1_630134_630809_-	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase	NA|185aa|up_8|NZ_CP042813.1_631281_631836_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|244aa|up_7|NZ_CP042813.1_632117_632849_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|441aa|up_6|NZ_CP042813.1_632961_634284_-	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|460aa|up_5|NZ_CP042813.1_634392_635772_-	PRK13238, tnaA, tryptophanase	NA|76aa|up_4|NZ_CP042813.1_636276_636504_+	cd10311, PLDc_N_DEXD_c, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|633aa|up_3|NZ_CP042813.1_636565_638464_+	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|1055aa|up_2|NZ_CP042813.1_638487_641652_+	COG3587, COG3587, Restriction endonuclease [Defense mechanisms]	NA|256aa|up_1|NZ_CP042813.1_642577_643345_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|164aa|up_0|NZ_CP042813.1_643506_643998_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|252aa|down_0|NZ_CP042813.1_647352_648108_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|381aa|down_1|NZ_CP042813.1_648169_649312_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|68aa|down_2|NZ_CP042813.1_649335_649539_-	NA	NA|775aa|down_3|NZ_CP042813.1_649973_652298_+	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|82aa|down_4|NZ_CP042813.1_652551_652797_+	NA	NA|630aa|down_5|NZ_CP042813.1_653033_654923_+	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|77aa|down_6|NZ_CP042813.1_656002_656233_-	NA	NA|177aa|down_7|NZ_CP042813.1_656357_656888_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|403aa|down_8|NZ_CP042813.1_657019_658228_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|75aa|down_9|NZ_CP042813.1_658481_658706_+	NA
GCF_008152505.1_ASM815250v1	NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	4	717632-717726	4	CRISPRCasFinder	no	cas3	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Unclear	TGTCAAAAACTAAACCACGAGTTT	24	0	0	NA	NA	NA	1	1	Unclear	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|193aa|up_9|NZ_CP042813.1_707068_707647_+,NA|759aa|up_8|NZ_CP042813.1_707764_710041_+,NA|185aa|up_6|NZ_CP042813.1_711375_711930_-,NA|147aa|up_3|NZ_CP042813.1_713295_713736_+,NA|72aa|down_0|NZ_CP042813.1_717832_718048_-,NA|69aa|down_5|NZ_CP042813.1_723612_723819_-	NA|193aa|up_9|NZ_CP042813.1_707068_707647_+	NA	NA|759aa|up_8|NZ_CP042813.1_707764_710041_+	NA	NA|434aa|up_7|NZ_CP042813.1_710070_711372_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|185aa|up_6|NZ_CP042813.1_711375_711930_-	NA	NA|278aa|up_5|NZ_CP042813.1_712038_712872_+	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|98aa|up_4|NZ_CP042813.1_713005_713299_+	pfam14213, DUF4325, STAS-like domain of unknown function (DUF4325)	NA|147aa|up_3|NZ_CP042813.1_713295_713736_+	NA	NA|283aa|up_2|NZ_CP042813.1_713803_714652_-	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|517aa|up_1|NZ_CP042813.1_714657_716208_-	pfam13646, HEAT_2, HEAT repeats	NA|377aa|up_0|NZ_CP042813.1_716211_717342_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|72aa|down_0|NZ_CP042813.1_717832_718048_-	NA	NA|213aa|down_1|NZ_CP042813.1_718154_718793_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|418aa|down_2|NZ_CP042813.1_719008_720262_-	pfam00665, rve, Integrase core domain	NA|381aa|down_3|NZ_CP042813.1_720420_721563_+	pfam07907, YibE_F, YibE/F-like protein	NA|630aa|down_4|NZ_CP042813.1_721670_723560_+	PRK09419, PRK09419, multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase	NA|69aa|down_5|NZ_CP042813.1_723612_723819_-	NA	cas3|685aa|down_6|NZ_CP042813.1_724515_726570_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|584aa|down_7|NZ_CP042813.1_726639_728391_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|419aa|down_8|NZ_CP042813.1_728978_730235_+	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	NA|156aa|down_9|NZ_CP042813.1_730206_730674_-	COG1671, COG1671, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_008152505.1_ASM815250v1	NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	5	1219871-1220005	5	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	GGGCGAAGTTTTGAAAATTTACAGCAACTTCGCCAACGAGTTT	43	0	0	NA	NA	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|104aa|up_9|NZ_CP042813.1_1210042_1210354_-,NA|403aa|up_7|NZ_CP042813.1_1212105_1213314_-,NA|63aa|up_6|NZ_CP042813.1_1213563_1213752_-,NA|179aa|up_3|NZ_CP042813.1_1215635_1216172_-,NA|139aa|down_4|NZ_CP042813.1_1226982_1227399_-	NA|104aa|up_9|NZ_CP042813.1_1210042_1210354_-	NA	NA|400aa|up_8|NZ_CP042813.1_1210788_1211988_-	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment	NA|403aa|up_7|NZ_CP042813.1_1212105_1213314_-	NA	NA|63aa|up_6|NZ_CP042813.1_1213563_1213752_-	NA	NA|274aa|up_5|NZ_CP042813.1_1213760_1214582_-	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|343aa|up_4|NZ_CP042813.1_1214610_1215639_-	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|179aa|up_3|NZ_CP042813.1_1215635_1216172_-	NA	NA|942aa|up_2|NZ_CP042813.1_1216224_1219050_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|77aa|up_1|NZ_CP042813.1_1219046_1219277_-	pfam04023, FeoA, FeoA domain	NA|80aa|up_0|NZ_CP042813.1_1219434_1219674_-	pfam04023, FeoA, FeoA domain	NA|1185aa|down_0|NZ_CP042813.1_1220305_1223860_+	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|323aa|down_1|NZ_CP042813.1_1224192_1225161_-	COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]	NA|168aa|down_2|NZ_CP042813.1_1225160_1225664_-	PRK00150, def, peptide deformylase; Reviewed	NA|70aa|down_3|NZ_CP042813.1_1225761_1225971_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|139aa|down_4|NZ_CP042813.1_1226982_1227399_-	NA	NA|198aa|down_5|NZ_CP042813.1_1227401_1227995_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|176aa|down_6|NZ_CP042813.1_1227991_1228519_-	pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)	NA|268aa|down_7|NZ_CP042813.1_1229013_1229817_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|324aa|down_8|NZ_CP042813.1_1229798_1230770_+	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|802aa|down_9|NZ_CP042813.1_1230766_1233172_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_008152505.1_ASM815250v1	NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	6	1712552-1712662	6	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	GAGTTTAAAAACTTCCTGTTATAAAAAG	28	1	1	1712580-1712634	NZ_CP042813.1_1702204-1702258	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|64aa|up_5|NZ_CP042813.1_1708213_1708405_-,NA|62aa|up_1|NZ_CP042813.1_1712023_1712209_-,NA|62aa|up_0|NZ_CP042813.1_1712241_1712427_-,NA|72aa|down_0|NZ_CP042813.1_1712718_1712934_-,NA|524aa|down_4|NZ_CP042813.1_1715680_1717252_+,NA|267aa|down_6|NZ_CP042813.1_1718132_1718933_+	NA|453aa|up_9|NZ_CP042813.1_1704244_1705603_+	PRK03642, PRK03642, putative periplasmic esterase; Provisional	NA|126aa|up_8|NZ_CP042813.1_1705648_1706026_+	pfam10941, DUF2620, Protein of unknown function DUF2620	NA|437aa|up_7|NZ_CP042813.1_1706022_1707333_+	pfam10797, YhfT, Protein of unknown function	NA|296aa|up_6|NZ_CP042813.1_1707329_1708217_+	PRK09875, PRK09875, phosphotriesterase-related protein	NA|64aa|up_5|NZ_CP042813.1_1708213_1708405_-	NA	NA|365aa|up_4|NZ_CP042813.1_1708477_1709572_+	cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes	NA|389aa|up_3|NZ_CP042813.1_1709572_1710739_+	cd06811, PLPDE_III_yhfX_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX	NA|405aa|up_2|NZ_CP042813.1_1710732_1711947_+	PRK12383, PRK12383, putative mutase; Provisional	NA|62aa|up_1|NZ_CP042813.1_1712023_1712209_-	NA	NA|62aa|up_0|NZ_CP042813.1_1712241_1712427_-	NA	NA|72aa|down_0|NZ_CP042813.1_1712718_1712934_-	NA	NA|193aa|down_1|NZ_CP042813.1_1712864_1713443_+	pfam00665, rve, Integrase core domain	NA|376aa|down_2|NZ_CP042813.1_1714188_1715317_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|128aa|down_3|NZ_CP042813.1_1715313_1715697_+	cd17542, REC_CheY, phosphoacceptor receiver (REC) domain of chemotaxis protein CheY	NA|524aa|down_4|NZ_CP042813.1_1715680_1717252_+	NA	NA|293aa|down_5|NZ_CP042813.1_1717248_1718127_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|267aa|down_6|NZ_CP042813.1_1718132_1718933_+	NA	NA|428aa|down_7|NZ_CP042813.1_1718944_1720228_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|227aa|down_8|NZ_CP042813.1_1720220_1720901_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|449aa|down_9|NZ_CP042813.1_1720897_1722244_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
GCF_008152505.1_ASM815250v1	NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	7	2132689-2132837	7	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	AGCGACGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAG	47	1	22	2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790|2132736-2132790	NZ_CP042813.1_220566-220512|NZ_CP042813.1_1248435-1248489|NZ_CP042813.1_1264636-1264690|NZ_CP042813.1_2133341-2133395|NZ_CP042813.1_2220106-2220160|NZ_CP042813.1_2220260-2220314|NZ_CP042813.1_2522438-2522384|NZ_CP042813.1_2746178-2746124|NZ_CP042813.1_1573487-1573541|NZ_CP042813.1_2020303-2020357|NZ_CP042813.1_2215406-2215352|NZ_CP042813.1_2692723-2692669|NZ_CP042813.1_2703357-2703411|NZ_CP042813.1_3116350-3116296|NZ_CP042813.1_3164531-3164585|NZ_CP042813.1_840075-840129|NZ_CP042813.1_1164584-1164530|NZ_CP042813.1_1264241-1264295|NZ_CP042813.1_1264438-1264492|NZ_CP042813.1_1666675-1666729|NZ_CP042813.1_2698205-2698259|NZ_CP042813.1_3235881-3235935	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|267aa|up_7|NZ_CP042813.1_2121528_2122329_-,NA|61aa|up_2|NZ_CP042813.1_2127310_2127493_-,NA|123aa|down_1|NZ_CP042813.1_2134152_2134521_+,NA|95aa|down_3|NZ_CP042813.1_2135348_2135633_+	NA|327aa|up_9|NZ_CP042813.1_2118939_2119920_-	cd03393, PAP2_like_3, PAP2_like_3 proteins	NA|399aa|up_8|NZ_CP042813.1_2120331_2121528_-	pfam13023, HD_3, HD domain	NA|267aa|up_7|NZ_CP042813.1_2121528_2122329_-	NA	NA|563aa|up_6|NZ_CP042813.1_2122386_2124075_-	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|291aa|up_5|NZ_CP042813.1_2124664_2125537_-	COG0061, nadF, NAD kinase [Coenzyme metabolism]	NA|327aa|up_4|NZ_CP042813.1_2125549_2126530_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|158aa|up_3|NZ_CP042813.1_2126575_2127049_-	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea	NA|61aa|up_2|NZ_CP042813.1_2127310_2127493_-	NA	NA|692aa|up_1|NZ_CP042813.1_2129267_2131343_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|176aa|up_0|NZ_CP042813.1_2131716_2132244_+	pfam14343, PrcB_C, PrcB C-terminal	NA|154aa|down_0|NZ_CP042813.1_2133641_2134103_+	PRK06654, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|123aa|down_1|NZ_CP042813.1_2134152_2134521_+	NA	NA|220aa|down_2|NZ_CP042813.1_2134513_2135173_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|95aa|down_3|NZ_CP042813.1_2135348_2135633_+	NA	NA|161aa|down_4|NZ_CP042813.1_2135963_2136446_-	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional	NA|398aa|down_5|NZ_CP042813.1_2136442_2137636_-	pfam07075, DUF1343, Protein of unknown function (DUF1343)	NA|654aa|down_6|NZ_CP042813.1_2137632_2139594_-	PRK03642, PRK03642, putative periplasmic esterase; Provisional	NA|573aa|down_7|NZ_CP042813.1_2139702_2141421_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|236aa|down_8|NZ_CP042813.1_2142616_2143324_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|431aa|down_9|NZ_CP042813.1_2144118_2145411_-	PRK08637, PRK08637, hypothetical protein; Provisional
GCF_008152505.1_ASM815250v1	NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	8	2152316-2152428	8	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	CTGCGTGGAACCACCGCCGTCCATGGC	27	0	0	NA	NA	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA,NA|85aa|down_6|NZ_CP042813.1_2164211_2164466_+	NA|654aa|up_9|NZ_CP042813.1_2137632_2139594_-	PRK03642, PRK03642, putative periplasmic esterase; Provisional	NA|573aa|up_8|NZ_CP042813.1_2139702_2141421_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|236aa|up_7|NZ_CP042813.1_2142616_2143324_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|431aa|up_6|NZ_CP042813.1_2144118_2145411_-	PRK08637, PRK08637, hypothetical protein; Provisional	NA|331aa|up_5|NZ_CP042813.1_2145475_2146468_+	pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA)	NA|282aa|up_4|NZ_CP042813.1_2146430_2147276_-	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins	NA|135aa|up_3|NZ_CP042813.1_2147268_2147673_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|110aa|up_2|NZ_CP042813.1_2147669_2147999_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|711aa|up_1|NZ_CP042813.1_2148029_2150162_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|447aa|up_0|NZ_CP042813.1_2150165_2151506_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|495aa|down_0|NZ_CP042813.1_2152513_2153998_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|917aa|down_1|NZ_CP042813.1_2154407_2157158_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|592aa|down_2|NZ_CP042813.1_2157606_2159382_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|397aa|down_3|NZ_CP042813.1_2160035_2161226_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|400aa|down_4|NZ_CP042813.1_2161355_2162555_+	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|400aa|down_5|NZ_CP042813.1_2162704_2163904_-	PRK06234, PRK06234, methionine gamma-lyase; Provisional	NA|85aa|down_6|NZ_CP042813.1_2164211_2164466_+	NA	NA|1203aa|down_7|NZ_CP042813.1_2164546_2168155_-	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|341aa|down_8|NZ_CP042813.1_2169336_2170359_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|515aa|down_9|NZ_CP042813.1_2171277_2172822_+	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter
GCF_008152505.1_ASM815250v1	NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	9	2271816-2271967	9	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	AAACTCGTTGGCGAACCATAGGTAAAAATTCTAAGGGTTCGCCCGTGC	48	1	7	2271864-2271919|2271864-2271919|2271864-2271919|2271864-2271919|2271864-2271919|2271864-2271919|2271864-2271919	NZ_CP042813.1_1650914-1650859|NZ_CP042813.1_1651018-1650963|NZ_CP042813.1_2754241-2754296|NZ_CP042813.1_443789-443734|NZ_CP042813.1_1141532-1141477|NZ_CP042813.1_1427678-1427733|NZ_CP042813.1_3057720-3057665	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|122aa|up_7|NZ_CP042813.1_2265458_2265824_-,NA|146aa|up_6|NZ_CP042813.1_2265783_2266221_-,NA|135aa|up_5|NZ_CP042813.1_2266223_2266628_-,NA|130aa|up_4|NZ_CP042813.1_2266892_2267282_+,NA|126aa|up_3|NZ_CP042813.1_2267298_2267676_+,NA|294aa|up_1|NZ_CP042813.1_2268168_2269050_-,NA|399aa|down_0|NZ_CP042813.1_2272019_2273216_-,NA|559aa|down_5|NZ_CP042813.1_2278953_2280630_-,NA|274aa|down_6|NZ_CP042813.1_2280633_2281455_-,NA|490aa|down_7|NZ_CP042813.1_2281461_2282931_-,NA|609aa|down_8|NZ_CP042813.1_2282927_2284754_-,NA|269aa|down_9|NZ_CP042813.1_2284774_2285581_-	NA|362aa|up_9|NZ_CP042813.1_2263754_2264840_+	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain	NA|179aa|up_8|NZ_CP042813.1_2264847_2265384_+	pfam01420, Methylase_S, Type I restriction modification DNA specificity domain	NA|122aa|up_7|NZ_CP042813.1_2265458_2265824_-	NA	NA|146aa|up_6|NZ_CP042813.1_2265783_2266221_-	NA	NA|135aa|up_5|NZ_CP042813.1_2266223_2266628_-	NA	NA|130aa|up_4|NZ_CP042813.1_2266892_2267282_+	NA	NA|126aa|up_3|NZ_CP042813.1_2267298_2267676_+	NA	NA|159aa|up_2|NZ_CP042813.1_2267654_2268131_+	COG1952, SecB, Preprotein translocase subunit SecB [Intracellular trafficking and secretion]	NA|294aa|up_1|NZ_CP042813.1_2268168_2269050_-	NA	NA|869aa|up_0|NZ_CP042813.1_2269121_2271728_-	PTZ00146, PTZ00146, fibrillarin; Provisional	NA|399aa|down_0|NZ_CP042813.1_2272019_2273216_-	NA	NA|523aa|down_1|NZ_CP042813.1_2273217_2274786_-	pfam18798, LPD3, Large polyvalent protein-associated domain 3	NA|338aa|down_2|NZ_CP042813.1_2274795_2275809_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|638aa|down_3|NZ_CP042813.1_2275833_2277747_-	TIGR02794, Protein_TolA, TolA protein	NA|392aa|down_4|NZ_CP042813.1_2277750_2278926_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|559aa|down_5|NZ_CP042813.1_2278953_2280630_-	NA	NA|274aa|down_6|NZ_CP042813.1_2280633_2281455_-	NA	NA|490aa|down_7|NZ_CP042813.1_2281461_2282931_-	NA	NA|609aa|down_8|NZ_CP042813.1_2282927_2284754_-	NA	NA|269aa|down_9|NZ_CP042813.1_2284774_2285581_-	NA
GCF_008152505.1_ASM815250v1	NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	10	2370190-2370265	10	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	CCTCTGGTTTTTTCTCCTCAGCTTT	25	0	0	NA	NA	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|61aa|up_6|NZ_CP042813.1_2361658_2361841_-,NA|219aa|up_5|NZ_CP042813.1_2362234_2362891_-,NA|281aa|up_4|NZ_CP042813.1_2363126_2363969_-,NA|602aa|up_3|NZ_CP042813.1_2364077_2365883_-,NA|218aa|down_1|NZ_CP042813.1_2371359_2372013_-,NA|151aa|down_3|NZ_CP042813.1_2375551_2376004_-	NA|232aa|up_9|NZ_CP042813.1_2358445_2359141_+	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production	NA|158aa|up_8|NZ_CP042813.1_2359140_2359614_+	pfam02542, YgbB, YgbB family	NA|454aa|up_7|NZ_CP042813.1_2359713_2361075_+	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional	NA|61aa|up_6|NZ_CP042813.1_2361658_2361841_-	NA	NA|219aa|up_5|NZ_CP042813.1_2362234_2362891_-	NA	NA|281aa|up_4|NZ_CP042813.1_2363126_2363969_-	NA	NA|602aa|up_3|NZ_CP042813.1_2364077_2365883_-	NA	NA|102aa|up_2|NZ_CP042813.1_2366287_2366593_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|379aa|up_1|NZ_CP042813.1_2367301_2368438_-	sd00036, LRR_3, leucine-rich repeats	NA|276aa|up_0|NZ_CP042813.1_2368600_2369428_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|107aa|down_0|NZ_CP042813.1_2370532_2370853_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|218aa|down_1|NZ_CP042813.1_2371359_2372013_-	NA	NA|704aa|down_2|NZ_CP042813.1_2372588_2374700_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|151aa|down_3|NZ_CP042813.1_2375551_2376004_-	NA	NA|746aa|down_4|NZ_CP042813.1_2376924_2379162_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|405aa|down_5|NZ_CP042813.1_2379414_2380629_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|434aa|down_6|NZ_CP042813.1_2380721_2382023_-	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|391aa|down_7|NZ_CP042813.1_2383285_2384458_-	cd16009, PPM, Bacterial phosphopentomutase	NA|223aa|down_8|NZ_CP042813.1_2384486_2385155_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|122aa|down_9|NZ_CP042813.1_2385437_2385803_+	pfam01668, SmpB, SmpB protein
GCF_008152505.1_ASM815250v1	NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	11	2646357-2646504	11	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	TAACGGCTTCAGCATTCCGACGGTAACGGGCACGGATGCCCGTGGTTC	48	0	0	NA	NA	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA,NA	NA|112aa|up_9|NZ_CP042813.1_2635127_2635463_-	COG2005, ModE, N-terminal domain of molybdenum-binding protein [General function prediction only]	NA|168aa|up_8|NZ_CP042813.1_2635459_2635963_-	cd00886, MogA_MoaB, MogA_MoaB family	NA|147aa|up_7|NZ_CP042813.1_2635941_2636382_-	PRK14499, PRK14499, cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein	NA|323aa|up_6|NZ_CP042813.1_2636382_2637351_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|159aa|up_5|NZ_CP042813.1_2637331_2637808_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|324aa|up_4|NZ_CP042813.1_2637804_2638776_-	cd03522, MoeA_like, MoeA_like	NA|315aa|up_3|NZ_CP042813.1_2638806_2639751_-	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|850aa|up_2|NZ_CP042813.1_2640078_2642628_-	TIGR03311, Se_dep_XDH, selenium-dependent xanthine dehydrogenase	NA|459aa|up_1|NZ_CP042813.1_2642713_2644090_-	TIGR03173, pbuX, xanthine permease	NA|441aa|up_0|NZ_CP042813.1_2644656_2645979_-	PRK07203, PRK07203, putative aminohydrolase SsnA	NA|561aa|down_0|NZ_CP042813.1_2646727_2648410_-	PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional	NA|401aa|down_1|NZ_CP042813.1_2648431_2649634_-	PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional	NA|441aa|down_2|NZ_CP042813.1_2649741_2651064_-	PRK13004, PRK13004, YgeY family selenium metabolism-linked hydrolase	NA|398aa|down_3|NZ_CP042813.1_2651082_2652276_-	TIGR03316, aspartate/ornithine_carbamoyltransferase, knotted carbamoyltransferase YgeW	NA|222aa|down_4|NZ_CP042813.1_2652305_2652971_-	pfam08348, PAS_6, YheO-like PAS domain	NA|470aa|down_5|NZ_CP042813.1_2653099_2654509_-	PRK08323, PRK08323, phenylhydantoinase; Validated	NA|449aa|down_6|NZ_CP042813.1_2654705_2656052_-	pfam13941, MutL, MutL protein	NA|208aa|down_7|NZ_CP042813.1_2656051_2656675_-	pfam04961, FTCD_C, Formiminotransferase-cyclodeaminase	NA|559aa|down_8|NZ_CP042813.1_2657069_2658746_-	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|298aa|down_9|NZ_CP042813.1_2658747_2659641_-	TIGR02024, FtcD, glutamate formiminotransferase
GCF_008152505.1_ASM815250v1	NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	12	3073562-3073739	1	PILER-CR	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	CAGATTGCTCACATTAAAAGAGGTGAGTTTATTCTTATCGCACTTCAGTTCG	52	1	1	3073614-3073630	NZ_CP042813.1_3073740-3073756	NA	2	2	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|115aa|up_0|NZ_CP042813.1_3072760_3073105_+,NA|94aa|down_0|NZ_CP042813.1_3074769_3075051_-,NA|113aa|down_6|NZ_CP042813.1_3089992_3090331_-,NA|69aa|down_8|NZ_CP042813.1_3091906_3092113_-	NA|202aa|up_9|NZ_CP042813.1_3058252_3058858_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|373aa|up_8|NZ_CP042813.1_3058838_3059957_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|144aa|up_7|NZ_CP042813.1_3060457_3060889_-	TIGR02481, hemeryth_dom, hemerythrin-like metal-binding domain	NA|526aa|up_6|NZ_CP042813.1_3061081_3062659_-	PRK14095, pgi, glucose-6-phosphate isomerase; Provisional	NA|1010aa|up_5|NZ_CP042813.1_3064377_3067407_-	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|215aa|up_4|NZ_CP042813.1_3067434_3068079_-	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|423aa|up_3|NZ_CP042813.1_3068113_3069382_-	cd17262, RMtype1_S_Aco12261I-TRD2-CR2, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Aminobacterium colombiense DSM 12261 S subunit (S	NA|340aa|up_2|NZ_CP042813.1_3069684_3070704_-	pfam13310, Virulence_RhuM, Virulence protein RhuM family	NA|527aa|up_1|NZ_CP042813.1_3070696_3072277_-	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM)	NA|115aa|up_0|NZ_CP042813.1_3072760_3073105_+	NA	NA|94aa|down_0|NZ_CP042813.1_3074769_3075051_-	NA	NA|360aa|down_1|NZ_CP042813.1_3075222_3076302_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|397aa|down_2|NZ_CP042813.1_3076298_3077489_-	pfam13679, Methyltransf_32, Methyltransferase domain	NA|1040aa|down_3|NZ_CP042813.1_3077764_3080884_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|265aa|down_4|NZ_CP042813.1_3081167_3081962_-	pfam02673, BacA, Bacitracin resistance protein BacA	NA|422aa|down_5|NZ_CP042813.1_3082699_3083965_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|113aa|down_6|NZ_CP042813.1_3089992_3090331_-	NA	NA|356aa|down_7|NZ_CP042813.1_3090682_3091750_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|69aa|down_8|NZ_CP042813.1_3091906_3092113_-	NA	NA|345aa|down_9|NZ_CP042813.1_3092372_3093407_+	PLN02721, PLN02721, threonine aldolase
GCF_008152505.1_ASM815250v1	NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	13	3200106-3200216	12	CRISPRCasFinder	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	TTTAAAACATCGTTTCTGCTTGGAAC	26	0	0	NA	NA	NA	1	1	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|168aa|up_9|NZ_CP042813.1_3185119_3185623_-,NA|241aa|up_7|NZ_CP042813.1_3187153_3187876_-,NA|60aa|up_1|NZ_CP042813.1_3198312_3198492_-,NA|86aa|down_3|NZ_CP042813.1_3208676_3208934_+,NA|552aa|down_4|NZ_CP042813.1_3208969_3210625_-,NA|80aa|down_9|NZ_CP042813.1_3217802_3218042_-	NA|168aa|up_9|NZ_CP042813.1_3185119_3185623_-	NA	NA|396aa|up_8|NZ_CP042813.1_3185948_3187136_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|241aa|up_7|NZ_CP042813.1_3187153_3187876_-	NA	NA|611aa|up_6|NZ_CP042813.1_3189844_3191677_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|392aa|up_5|NZ_CP042813.1_3192027_3193203_-	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|612aa|up_4|NZ_CP042813.1_3194008_3195844_-	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|251aa|up_3|NZ_CP042813.1_3195902_3196655_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|421aa|up_2|NZ_CP042813.1_3196735_3197998_-	cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase	NA|60aa|up_1|NZ_CP042813.1_3198312_3198492_-	NA	NA|413aa|up_0|NZ_CP042813.1_3198707_3199946_+	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain	NA|818aa|down_0|NZ_CP042813.1_3200506_3202960_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|423aa|down_1|NZ_CP042813.1_3203415_3204684_-	PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|943aa|down_2|NZ_CP042813.1_3205557_3208386_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|86aa|down_3|NZ_CP042813.1_3208676_3208934_+	NA	NA|552aa|down_4|NZ_CP042813.1_3208969_3210625_-	NA	NA|756aa|down_5|NZ_CP042813.1_3210794_3213062_-	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|186aa|down_6|NZ_CP042813.1_3213987_3214545_-	COG3945, COG3945, Uncharacterized conserved protein [Function unknown]	NA|614aa|down_7|NZ_CP042813.1_3214602_3216444_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|223aa|down_8|NZ_CP042813.1_3216603_3217272_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|80aa|down_9|NZ_CP042813.1_3217802_3218042_-	NA
GCF_008152505.1_ASM815250v1	NZ_CP042813	Treponema phagedenis strain S11.1 chromosome, complete genome	14	3286051-3286332	2	PILER-CR	no		cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	ACGGACGCCCGTGGTTCCAAACAGCAACGATGTTTTAGAGCAAAACTATTTGCAAAGCTT	60	2	3	3286111-3286161|3286222-3286272|3286222-3286272	NZ_CP042813.1_658523-658573|NZ_CP042813.1_658523-658573|NZ_CP042813.1_1542117-1542067	NA	2	2	Orphan	cas9,cas3,DEDDh,WYL,DinG,csx1,csa3,RT	NA|73aa|up_0|NZ_CP042813.1_3285565_3285784_+,NA|594aa|down_0|NZ_CP042813.1_3286493_3288275_+,NA|61aa|down_2|NZ_CP042813.1_3290413_3290596_+,NA|336aa|down_7|NZ_CP042813.1_3297648_3298656_-,NA|226aa|down_8|NZ_CP042813.1_3298667_3299345_-	NA|281aa|up_9|NZ_CP042813.1_3275871_3276714_-	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase	NA|168aa|up_8|NZ_CP042813.1_3276710_3277214_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|687aa|up_7|NZ_CP042813.1_3277167_3279228_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|388aa|up_6|NZ_CP042813.1_3279302_3280466_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|206aa|up_5|NZ_CP042813.1_3281182_3281800_+	pfam09605, Trep_Strep, Hypothetical bacterial integral membrane protein (Trep_Strep)	NA|185aa|up_4|NZ_CP042813.1_3281805_3282360_+	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|233aa|up_3|NZ_CP042813.1_3282356_3283055_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|536aa|up_2|NZ_CP042813.1_3283048_3284656_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|244aa|up_1|NZ_CP042813.1_3284796_3285528_+	pfam13306, LRR_5, Leucine rich repeats (6 copies)	NA|73aa|up_0|NZ_CP042813.1_3285565_3285784_+	NA	NA|594aa|down_0|NZ_CP042813.1_3286493_3288275_+	NA	NA|617aa|down_1|NZ_CP042813.1_3288293_3290144_+	COG0557, VacB, Exoribonuclease R [Transcription]	NA|61aa|down_2|NZ_CP042813.1_3290413_3290596_+	NA	NA|134aa|down_3|NZ_CP042813.1_3290879_3291281_-	TIGR02364, dha_pts, dihydroxyacetone kinase, phosphotransfer subunit	NA|205aa|down_4|NZ_CP042813.1_3291290_3291905_-	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|331aa|down_5|NZ_CP042813.1_3291925_3292918_-	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|733aa|down_6|NZ_CP042813.1_3295457_3297656_-	PRK13341, PRK13341, AAA family ATPase	NA|336aa|down_7|NZ_CP042813.1_3297648_3298656_-	NA	NA|226aa|down_8|NZ_CP042813.1_3298667_3299345_-	NA	NA|294aa|down_9|NZ_CP042813.1_3299511_3300393_+	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
