assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008153205.1_ASM815320v1	NZ_CP042817	Treponema phagedenis strain B36.5 chromosome, complete genome	1	233266-233375	1	CRISPRCasFinder	no		cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	AATACTTTTTAAACTATGGCAGGAACTAAAAGCCT	35	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	NA|65aa|up_9|NZ_CP042817.1_220444_220639_-,NA|77aa|up_6|NZ_CP042817.1_222917_223148_+,NA|94aa|up_3|NZ_CP042817.1_229386_229668_+,NA|68aa|up_2|NZ_CP042817.1_229622_229826_+,NA	NA|65aa|up_9|NZ_CP042817.1_220444_220639_-	NA	NA|403aa|up_8|NZ_CP042817.1_220922_222131_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|177aa|up_7|NZ_CP042817.1_222262_222793_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|77aa|up_6|NZ_CP042817.1_222917_223148_+	NA	NA|630aa|up_5|NZ_CP042817.1_224227_226117_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|775aa|up_4|NZ_CP042817.1_226852_229177_-	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|94aa|up_3|NZ_CP042817.1_229386_229668_+	NA	NA|68aa|up_2|NZ_CP042817.1_229622_229826_+	NA	NA|381aa|up_1|NZ_CP042817.1_229849_230992_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|252aa|up_0|NZ_CP042817.1_231053_231809_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|164aa|down_0|NZ_CP042817.1_235163_235655_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|256aa|down_1|NZ_CP042817.1_235816_236584_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|1055aa|down_2|NZ_CP042817.1_237508_240673_-	COG3587, COG3587, Restriction endonuclease [Defense mechanisms]	NA|633aa|down_3|NZ_CP042817.1_240696_242595_-	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|134aa|down_4|NZ_CP042817.1_242656_243058_-	cd10311, PLDc_N_DEXD_c, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|460aa|down_5|NZ_CP042817.1_243326_244706_+	PRK13238, tnaA, tryptophanase	NA|441aa|down_6|NZ_CP042817.1_244814_246137_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|244aa|down_7|NZ_CP042817.1_246249_246981_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|190aa|down_8|NZ_CP042817.1_247260_247830_-	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|225aa|down_9|NZ_CP042817.1_248288_248963_+	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase
GCF_008153205.1_ASM815320v1	NZ_CP042817	Treponema phagedenis strain B36.5 chromosome, complete genome	2	333266-333375	2	CRISPRCasFinder	no		cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	AATACTTTTTAAACTATGGCAGGAACTAAAAGCCT	35	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	NA|65aa|up_9|NZ_CP042817.1_320444_320639_-,NA|77aa|up_6|NZ_CP042817.1_322917_323148_+,NA|94aa|up_3|NZ_CP042817.1_329386_329668_+,NA|68aa|up_2|NZ_CP042817.1_329622_329826_+,NA	NA|65aa|up_9|NZ_CP042817.1_320444_320639_-	NA	NA|403aa|up_8|NZ_CP042817.1_320922_322131_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|177aa|up_7|NZ_CP042817.1_322262_322793_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|77aa|up_6|NZ_CP042817.1_322917_323148_+	NA	NA|630aa|up_5|NZ_CP042817.1_324227_326117_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|775aa|up_4|NZ_CP042817.1_326852_329177_-	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|94aa|up_3|NZ_CP042817.1_329386_329668_+	NA	NA|68aa|up_2|NZ_CP042817.1_329622_329826_+	NA	NA|381aa|up_1|NZ_CP042817.1_329849_330992_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|252aa|up_0|NZ_CP042817.1_331053_331809_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|164aa|down_0|NZ_CP042817.1_335163_335655_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|256aa|down_1|NZ_CP042817.1_335816_336584_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|1055aa|down_2|NZ_CP042817.1_337508_340673_-	COG3587, COG3587, Restriction endonuclease [Defense mechanisms]	NA|633aa|down_3|NZ_CP042817.1_340696_342595_-	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|134aa|down_4|NZ_CP042817.1_342656_343058_-	cd10311, PLDc_N_DEXD_c, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|460aa|down_5|NZ_CP042817.1_343326_344706_+	PRK13238, tnaA, tryptophanase	NA|441aa|down_6|NZ_CP042817.1_344814_346137_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|244aa|down_7|NZ_CP042817.1_346249_346981_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|190aa|down_8|NZ_CP042817.1_347260_347830_-	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|225aa|down_9|NZ_CP042817.1_348288_348963_+	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase
GCF_008153205.1_ASM815320v1	NZ_CP042817	Treponema phagedenis strain B36.5 chromosome, complete genome	3	433430-433539	3	CRISPRCasFinder	no		cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	AATACTTTTTAAACTATGGCAGGAACTAAAAGCCT	35	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	NA|65aa|up_9|NZ_CP042817.1_420608_420803_-,NA|77aa|up_6|NZ_CP042817.1_423081_423312_+,NA|94aa|up_3|NZ_CP042817.1_429550_429832_+,NA|68aa|up_2|NZ_CP042817.1_429786_429990_+,NA	NA|65aa|up_9|NZ_CP042817.1_420608_420803_-	NA	NA|403aa|up_8|NZ_CP042817.1_421086_422295_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|177aa|up_7|NZ_CP042817.1_422426_422957_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|77aa|up_6|NZ_CP042817.1_423081_423312_+	NA	NA|630aa|up_5|NZ_CP042817.1_424391_426281_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|775aa|up_4|NZ_CP042817.1_427016_429341_-	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|94aa|up_3|NZ_CP042817.1_429550_429832_+	NA	NA|68aa|up_2|NZ_CP042817.1_429786_429990_+	NA	NA|381aa|up_1|NZ_CP042817.1_430013_431156_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|252aa|up_0|NZ_CP042817.1_431217_431973_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|164aa|down_0|NZ_CP042817.1_435327_435819_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|256aa|down_1|NZ_CP042817.1_435980_436748_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|1055aa|down_2|NZ_CP042817.1_437672_440837_-	COG3587, COG3587, Restriction endonuclease [Defense mechanisms]	NA|633aa|down_3|NZ_CP042817.1_440860_442759_-	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair]	NA|134aa|down_4|NZ_CP042817.1_442820_443222_-	cd10311, PLDc_N_DEXD_c, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain	NA|460aa|down_5|NZ_CP042817.1_443490_444870_+	PRK13238, tnaA, tryptophanase	NA|441aa|down_6|NZ_CP042817.1_444978_446301_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|244aa|down_7|NZ_CP042817.1_446413_447145_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|190aa|down_8|NZ_CP042817.1_447424_447994_-	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|225aa|down_9|NZ_CP042817.1_448452_449127_+	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase
GCF_008153205.1_ASM815320v1	NZ_CP042817	Treponema phagedenis strain B36.5 chromosome, complete genome	4	548170-548264	4	CRISPRCasFinder	no	cas3	cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	Unclear	TGTCAAAAACTAAACCACGAGTTT	24	0	0	NA	NA	NA	1	1	Unclear	cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	NA|193aa|up_9|NZ_CP042817.1_537606_538185_+,NA|759aa|up_8|NZ_CP042817.1_538302_540579_+,NA|185aa|up_6|NZ_CP042817.1_541913_542468_-,NA|147aa|up_3|NZ_CP042817.1_543833_544274_+,NA|72aa|down_0|NZ_CP042817.1_548370_548586_-,NA|69aa|down_5|NZ_CP042817.1_554150_554357_-	NA|193aa|up_9|NZ_CP042817.1_537606_538185_+	NA	NA|759aa|up_8|NZ_CP042817.1_538302_540579_+	NA	NA|434aa|up_7|NZ_CP042817.1_540608_541910_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|185aa|up_6|NZ_CP042817.1_541913_542468_-	NA	NA|278aa|up_5|NZ_CP042817.1_542576_543410_+	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|98aa|up_4|NZ_CP042817.1_543543_543837_+	pfam14213, DUF4325, STAS-like domain of unknown function (DUF4325)	NA|147aa|up_3|NZ_CP042817.1_543833_544274_+	NA	NA|283aa|up_2|NZ_CP042817.1_544341_545190_-	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|517aa|up_1|NZ_CP042817.1_545195_546746_-	pfam13646, HEAT_2, HEAT repeats	NA|377aa|up_0|NZ_CP042817.1_546749_547880_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|72aa|down_0|NZ_CP042817.1_548370_548586_-	NA	NA|213aa|down_1|NZ_CP042817.1_548692_549331_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|418aa|down_2|NZ_CP042817.1_549546_550800_-	pfam13551, HTH_29, Winged helix-turn helix	NA|381aa|down_3|NZ_CP042817.1_550958_552101_+	pfam07907, YibE_F, YibE/F-like protein	NA|630aa|down_4|NZ_CP042817.1_552208_554098_+	PRK09419, PRK09419, multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase	NA|69aa|down_5|NZ_CP042817.1_554150_554357_-	NA	cas3|685aa|down_6|NZ_CP042817.1_555053_557108_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|584aa|down_7|NZ_CP042817.1_557177_558929_-	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|156aa|down_8|NZ_CP042817.1_560744_561212_-	COG1671, COG1671, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|down_9|NZ_CP042817.1_561208_562420_-	PRK15131, PRK15131, mannose-6-phosphate isomerase; Provisional
GCF_008153205.1_ASM815320v1	NZ_CP042817	Treponema phagedenis strain B36.5 chromosome, complete genome	5	1486157-1486291	5	CRISPRCasFinder	no		cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	GGGCGAAGTTTTGAAAATTTACAGCAACTTCGCCAACGAGTTT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	NA|104aa|up_9|NZ_CP042817.1_1476328_1476640_-,NA|403aa|up_7|NZ_CP042817.1_1478391_1479600_-,NA|63aa|up_6|NZ_CP042817.1_1479849_1480038_-,NA|179aa|up_3|NZ_CP042817.1_1481921_1482458_-,NA|139aa|down_4|NZ_CP042817.1_1493268_1493685_-	NA|104aa|up_9|NZ_CP042817.1_1476328_1476640_-	NA	NA|400aa|up_8|NZ_CP042817.1_1477074_1478274_-	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment	NA|403aa|up_7|NZ_CP042817.1_1478391_1479600_-	NA	NA|63aa|up_6|NZ_CP042817.1_1479849_1480038_-	NA	NA|274aa|up_5|NZ_CP042817.1_1480046_1480868_-	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|343aa|up_4|NZ_CP042817.1_1480896_1481925_-	COG5266, CbiK, ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|179aa|up_3|NZ_CP042817.1_1481921_1482458_-	NA	NA|942aa|up_2|NZ_CP042817.1_1482510_1485336_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|77aa|up_1|NZ_CP042817.1_1485332_1485563_-	pfam04023, FeoA, FeoA domain	NA|80aa|up_0|NZ_CP042817.1_1485720_1485960_-	pfam04023, FeoA, FeoA domain	NA|1185aa|down_0|NZ_CP042817.1_1486591_1490146_+	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|323aa|down_1|NZ_CP042817.1_1490478_1491447_-	COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]	NA|168aa|down_2|NZ_CP042817.1_1491446_1491950_-	PRK00150, def, peptide deformylase; Reviewed	NA|70aa|down_3|NZ_CP042817.1_1492047_1492257_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|139aa|down_4|NZ_CP042817.1_1493268_1493685_-	NA	NA|198aa|down_5|NZ_CP042817.1_1493687_1494281_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|176aa|down_6|NZ_CP042817.1_1494277_1494805_-	pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)	NA|268aa|down_7|NZ_CP042817.1_1495299_1496103_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|324aa|down_8|NZ_CP042817.1_1496084_1497056_+	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|802aa|down_9|NZ_CP042817.1_1497052_1499458_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_008153205.1_ASM815320v1	NZ_CP042817	Treponema phagedenis strain B36.5 chromosome, complete genome	6	2461590-2461738	6	CRISPRCasFinder	no		cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	AGCGACGTTTTAAAGCAAGGCTGCTTACAAAGCTTTAAAACTCGCAG	47	1	21	2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691|2461637-2461691	NZ_CP042817.1_929377-929431|NZ_CP042817.1_1514721-1514775|NZ_CP042817.1_1530922-1530976|NZ_CP042817.1_2462242-2462296|NZ_CP042817.1_2549132-2549186|NZ_CP042817.1_2817010-2816956|NZ_CP042817.1_3037109-3037055|NZ_CP042817.1_1901668-1901722|NZ_CP042817.1_2347564-2347618|NZ_CP042817.1_2544432-2544378|NZ_CP042817.1_2994477-2994531|NZ_CP042817.1_3389857-3389803|NZ_CP042817.1_3436112-3436166|NZ_CP042817.1_1104502-1104556|NZ_CP042817.1_1430928-1430874|NZ_CP042817.1_1530527-1530581|NZ_CP042817.1_1530724-1530778|NZ_CP042817.1_1777720-1777666|NZ_CP042817.1_1993779-1993833|NZ_CP042817.1_2989325-2989379|NZ_CP042817.1_3507467-3507521	NA	1	1	Orphan	cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	NA|267aa|up_7|NZ_CP042817.1_2450428_2451229_-,NA|61aa|up_2|NZ_CP042817.1_2456210_2456393_-,NA|123aa|down_1|NZ_CP042817.1_2463053_2463422_+,NA|95aa|down_3|NZ_CP042817.1_2464249_2464534_+	NA|327aa|up_9|NZ_CP042817.1_2447839_2448820_-	cd03393, PAP2_like_3, PAP2_like_3 proteins	NA|399aa|up_8|NZ_CP042817.1_2449231_2450428_-	pfam13023, HD_3, HD domain	NA|267aa|up_7|NZ_CP042817.1_2450428_2451229_-	NA	NA|563aa|up_6|NZ_CP042817.1_2451286_2452975_-	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|291aa|up_5|NZ_CP042817.1_2453564_2454437_-	COG0061, nadF, NAD kinase [Coenzyme metabolism]	NA|327aa|up_4|NZ_CP042817.1_2454449_2455430_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|158aa|up_3|NZ_CP042817.1_2455475_2455949_-	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea	NA|61aa|up_2|NZ_CP042817.1_2456210_2456393_-	NA	NA|692aa|up_1|NZ_CP042817.1_2458168_2460244_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|176aa|up_0|NZ_CP042817.1_2460617_2461145_+	pfam14343, PrcB_C, PrcB C-terminal	NA|154aa|down_0|NZ_CP042817.1_2462542_2463004_+	PRK06654, fliL, flagellar basal body-associated protein FliL; Reviewed	NA|123aa|down_1|NZ_CP042817.1_2463053_2463422_+	NA	NA|220aa|down_2|NZ_CP042817.1_2463414_2464074_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|95aa|down_3|NZ_CP042817.1_2464249_2464534_+	NA	NA|161aa|down_4|NZ_CP042817.1_2464864_2465347_-	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional	NA|398aa|down_5|NZ_CP042817.1_2465343_2466537_-	pfam07075, DUF1343, Protein of unknown function (DUF1343)	NA|654aa|down_6|NZ_CP042817.1_2466533_2468495_-	PRK03642, PRK03642, putative periplasmic esterase; Provisional	NA|573aa|down_7|NZ_CP042817.1_2468603_2470322_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|236aa|down_8|NZ_CP042817.1_2471517_2472225_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|431aa|down_9|NZ_CP042817.1_2473019_2474312_-	PRK08637, PRK08637, hypothetical protein; Provisional
GCF_008153205.1_ASM815320v1	NZ_CP042817	Treponema phagedenis strain B36.5 chromosome, complete genome	7	2481217-2481329	7	CRISPRCasFinder	no		cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	CTGCGTGGAACCACCGCCGTCCATGGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	NA,NA|85aa|down_6|NZ_CP042817.1_2493112_2493367_+	NA|654aa|up_9|NZ_CP042817.1_2466533_2468495_-	PRK03642, PRK03642, putative periplasmic esterase; Provisional	NA|573aa|up_8|NZ_CP042817.1_2468603_2470322_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|236aa|up_7|NZ_CP042817.1_2471517_2472225_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|431aa|up_6|NZ_CP042817.1_2473019_2474312_-	PRK08637, PRK08637, hypothetical protein; Provisional	NA|331aa|up_5|NZ_CP042817.1_2474376_2475369_+	pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA)	NA|282aa|up_4|NZ_CP042817.1_2475331_2476177_-	cd14852, LD-carboxypeptidase, L,D-carboxypeptidase DacB and LdcB, and related proteins	NA|135aa|up_3|NZ_CP042817.1_2476169_2476574_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|110aa|up_2|NZ_CP042817.1_2476570_2476900_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|711aa|up_1|NZ_CP042817.1_2476930_2479063_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|447aa|up_0|NZ_CP042817.1_2479066_2480407_-	COG2208, RsbU, Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]	NA|495aa|down_0|NZ_CP042817.1_2481414_2482899_-	COG5421, COG5421, Transposase [DNA replication, recombination, and repair]	NA|917aa|down_1|NZ_CP042817.1_2483308_2486059_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|592aa|down_2|NZ_CP042817.1_2486507_2488283_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|397aa|down_3|NZ_CP042817.1_2488936_2490127_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|400aa|down_4|NZ_CP042817.1_2490256_2491456_+	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|400aa|down_5|NZ_CP042817.1_2491605_2492805_-	PRK06234, PRK06234, methionine gamma-lyase; Provisional	NA|85aa|down_6|NZ_CP042817.1_2493112_2493367_+	NA	NA|1203aa|down_7|NZ_CP042817.1_2493447_2497056_-	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|341aa|down_8|NZ_CP042817.1_2498237_2499260_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|515aa|down_9|NZ_CP042817.1_2500178_2501723_+	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter
GCF_008153205.1_ASM815320v1	NZ_CP042817	Treponema phagedenis strain B36.5 chromosome, complete genome	8	2600155-2600306	8	CRISPRCasFinder	no		cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	AAACTCGTTGGCGAACCATAGGTAAAAATTCTAAGGGTTCGCCCGTGC	48	1	7	2600203-2600258|2600203-2600258|2600203-2600258|2600203-2600258|2600203-2600258|2600203-2600258|2600203-2600258	NZ_CP042817.1_1978016-1977961|NZ_CP042817.1_1978120-1978065|NZ_CP042817.1_707931-707986|NZ_CP042817.1_3045172-3045227|NZ_CP042817.1_1407876-1407821|NZ_CP042817.1_1745564-1745619|NZ_CP042817.1_3332211-3332156	NA	1	1	Orphan	cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	NA|122aa|up_9|NZ_CP042817.1_2592960_2593326_-,NA|146aa|up_8|NZ_CP042817.1_2593285_2593723_-,NA|135aa|up_7|NZ_CP042817.1_2593725_2594130_-,NA|130aa|up_6|NZ_CP042817.1_2594394_2594784_+,NA|126aa|up_5|NZ_CP042817.1_2594800_2595178_+,NA|62aa|up_2|NZ_CP042817.1_2595940_2596126_-,NA|399aa|down_0|NZ_CP042817.1_2600358_2601555_-,NA|559aa|down_5|NZ_CP042817.1_2607172_2608849_-,NA|274aa|down_6|NZ_CP042817.1_2608852_2609674_-,NA|490aa|down_7|NZ_CP042817.1_2609680_2611150_-,NA|609aa|down_8|NZ_CP042817.1_2611146_2612973_-,NA|269aa|down_9|NZ_CP042817.1_2612993_2613800_-	NA|122aa|up_9|NZ_CP042817.1_2592960_2593326_-	NA	NA|146aa|up_8|NZ_CP042817.1_2593285_2593723_-	NA	NA|135aa|up_7|NZ_CP042817.1_2593725_2594130_-	NA	NA|130aa|up_6|NZ_CP042817.1_2594394_2594784_+	NA	NA|126aa|up_5|NZ_CP042817.1_2594800_2595178_+	NA	NA|159aa|up_4|NZ_CP042817.1_2595156_2595633_+	COG1952, SecB, Preprotein translocase subunit SecB [Intracellular trafficking and secretion]	NA|60aa|up_3|NZ_CP042817.1_2595667_2595847_-	cd08513, PBP2_thermophilic_Hb8_like, The substrate-binding component of ABC-type thermophilic oligopeptide-binding protein Hb8-like import systems, contains the type 2 periplasmic binding fold	NA|62aa|up_2|NZ_CP042817.1_2595940_2596126_-	NA	NA|237aa|up_1|NZ_CP042817.1_2596552_2597263_-	pfam12569, NARP1, NMDA receptor-regulated protein 1	NA|916aa|up_0|NZ_CP042817.1_2597319_2600067_-	pfam05268, GP38, Phage tail fibre adhesin Gp38	NA|399aa|down_0|NZ_CP042817.1_2600358_2601555_-	NA	NA|523aa|down_1|NZ_CP042817.1_2601556_2603125_-	pfam18798, LPD3, Large polyvalent protein-associated domain 3	NA|298aa|down_2|NZ_CP042817.1_2603134_2604028_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|638aa|down_3|NZ_CP042817.1_2604052_2605966_-	TIGR02794, Protein_TolA, TolA protein	NA|392aa|down_4|NZ_CP042817.1_2605969_2607145_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|559aa|down_5|NZ_CP042817.1_2607172_2608849_-	NA	NA|274aa|down_6|NZ_CP042817.1_2608852_2609674_-	NA	NA|490aa|down_7|NZ_CP042817.1_2609680_2611150_-	NA	NA|609aa|down_8|NZ_CP042817.1_2611146_2612973_-	NA	NA|269aa|down_9|NZ_CP042817.1_2612993_2613800_-	NA
GCF_008153205.1_ASM815320v1	NZ_CP042817	Treponema phagedenis strain B36.5 chromosome, complete genome	9	2699074-2699149	9	CRISPRCasFinder	no		cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	CCTCTGGTTTTTTCTCCTCAGCTTT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	NA|61aa|up_6|NZ_CP042817.1_2690527_2690710_-,NA|219aa|up_5|NZ_CP042817.1_2691103_2691760_-,NA|281aa|up_4|NZ_CP042817.1_2691995_2692838_-,NA|602aa|up_3|NZ_CP042817.1_2692946_2694752_-,NA|112aa|down_1|NZ_CP042817.1_2699723_2700059_-,NA|218aa|down_2|NZ_CP042817.1_2700237_2700891_-,NA|151aa|down_4|NZ_CP042817.1_2704430_2704883_-	NA|232aa|up_9|NZ_CP042817.1_2687314_2688010_+	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production	NA|158aa|up_8|NZ_CP042817.1_2688009_2688483_+	pfam02542, YgbB, YgbB family	NA|454aa|up_7|NZ_CP042817.1_2688582_2689944_+	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional	NA|61aa|up_6|NZ_CP042817.1_2690527_2690710_-	NA	NA|219aa|up_5|NZ_CP042817.1_2691103_2691760_-	NA	NA|281aa|up_4|NZ_CP042817.1_2691995_2692838_-	NA	NA|602aa|up_3|NZ_CP042817.1_2692946_2694752_-	NA	NA|102aa|up_2|NZ_CP042817.1_2695156_2695462_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|379aa|up_1|NZ_CP042817.1_2696170_2697307_-	sd00036, LRR_3, leucine-rich repeats	NA|276aa|up_0|NZ_CP042817.1_2697469_2698297_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|107aa|down_0|NZ_CP042817.1_2699406_2699727_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|112aa|down_1|NZ_CP042817.1_2699723_2700059_-	NA	NA|218aa|down_2|NZ_CP042817.1_2700237_2700891_-	NA	NA|704aa|down_3|NZ_CP042817.1_2701466_2703578_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|151aa|down_4|NZ_CP042817.1_2704430_2704883_-	NA	NA|746aa|down_5|NZ_CP042817.1_2705810_2708048_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|405aa|down_6|NZ_CP042817.1_2708300_2709515_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|434aa|down_7|NZ_CP042817.1_2709607_2710909_-	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|391aa|down_8|NZ_CP042817.1_2712171_2713344_-	cd16009, PPM, Bacterial phosphopentomutase	NA|223aa|down_9|NZ_CP042817.1_2713372_2714041_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional
GCF_008153205.1_ASM815320v1	NZ_CP042817	Treponema phagedenis strain B36.5 chromosome, complete genome	10	2937564-2937711	10	CRISPRCasFinder	no		cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	TAACGGCTTCAGCATTCCGACGGTAACGGGCACGGATGCCCGTGGTTC	48	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	NA,NA	NA|112aa|up_9|NZ_CP042817.1_2926334_2926670_-	COG2005, ModE, N-terminal domain of molybdenum-binding protein [General function prediction only]	NA|168aa|up_8|NZ_CP042817.1_2926666_2927170_-	cd00886, MogA_MoaB, MogA_MoaB family	NA|147aa|up_7|NZ_CP042817.1_2927148_2927589_-	PRK14499, PRK14499, cyclic pyranopterin monophosphate synthase MoaC/MOSC-domain-containing protein	NA|323aa|up_6|NZ_CP042817.1_2927589_2928558_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|159aa|up_5|NZ_CP042817.1_2928538_2929015_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|324aa|up_4|NZ_CP042817.1_2929011_2929983_-	cd03522, MoeA_like, MoeA_like	NA|315aa|up_3|NZ_CP042817.1_2930013_2930958_-	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|850aa|up_2|NZ_CP042817.1_2931285_2933835_-	TIGR03311, Se_dep_XDH, selenium-dependent xanthine dehydrogenase	NA|459aa|up_1|NZ_CP042817.1_2933920_2935297_-	TIGR03173, pbuX, xanthine permease	NA|441aa|up_0|NZ_CP042817.1_2935863_2937186_-	PRK07203, PRK07203, putative aminohydrolase SsnA	NA|561aa|down_0|NZ_CP042817.1_2937934_2939617_-	PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional	NA|401aa|down_1|NZ_CP042817.1_2939638_2940841_-	PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional	NA|441aa|down_2|NZ_CP042817.1_2940948_2942271_-	PRK13004, PRK13004, YgeY family selenium metabolism-linked hydrolase	NA|398aa|down_3|NZ_CP042817.1_2942289_2943483_-	TIGR03316, aspartate/ornithine_carbamoyltransferase, knotted carbamoyltransferase YgeW	NA|222aa|down_4|NZ_CP042817.1_2943512_2944178_-	pfam08348, PAS_6, YheO-like PAS domain	NA|470aa|down_5|NZ_CP042817.1_2944306_2945716_-	PRK08323, PRK08323, phenylhydantoinase; Validated	NA|449aa|down_6|NZ_CP042817.1_2945912_2947259_-	pfam13941, MutL, MutL protein	NA|208aa|down_7|NZ_CP042817.1_2947258_2947882_-	pfam04961, FTCD_C, Formiminotransferase-cyclodeaminase	NA|559aa|down_8|NZ_CP042817.1_2948276_2949953_-	pfam01268, FTHFS, Formate--tetrahydrofolate ligase	NA|298aa|down_9|NZ_CP042817.1_2949954_2950848_-	TIGR02024, FtcD, glutamate formiminotransferase
GCF_008153205.1_ASM815320v1	NZ_CP042817	Treponema phagedenis strain B36.5 chromosome, complete genome	11	3471691-3471801	11	CRISPRCasFinder	no		cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	TTTAAAACATCGTTTCTGCTTGGAAC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	NA|187aa|up_9|NZ_CP042817.1_3456644_3457205_-,NA|241aa|up_7|NZ_CP042817.1_3458735_3459458_-,NA|60aa|up_1|NZ_CP042817.1_3469898_3470078_-,NA|86aa|down_3|NZ_CP042817.1_3480262_3480520_+,NA|552aa|down_4|NZ_CP042817.1_3480555_3482211_-,NA|80aa|down_9|NZ_CP042817.1_3489388_3489628_-	NA|187aa|up_9|NZ_CP042817.1_3456644_3457205_-	NA	NA|396aa|up_8|NZ_CP042817.1_3457530_3458718_-	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|241aa|up_7|NZ_CP042817.1_3458735_3459458_-	NA	NA|611aa|up_6|NZ_CP042817.1_3461430_3463263_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|392aa|up_5|NZ_CP042817.1_3463613_3464789_-	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|612aa|up_4|NZ_CP042817.1_3465594_3467430_-	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|251aa|up_3|NZ_CP042817.1_3467488_3468241_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|421aa|up_2|NZ_CP042817.1_3468321_3469584_-	cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase	NA|60aa|up_1|NZ_CP042817.1_3469898_3470078_-	NA	NA|413aa|up_0|NZ_CP042817.1_3470292_3471531_+	pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain	NA|818aa|down_0|NZ_CP042817.1_3472091_3474545_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|423aa|down_1|NZ_CP042817.1_3475000_3476269_-	PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|943aa|down_2|NZ_CP042817.1_3477143_3479972_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|86aa|down_3|NZ_CP042817.1_3480262_3480520_+	NA	NA|552aa|down_4|NZ_CP042817.1_3480555_3482211_-	NA	NA|756aa|down_5|NZ_CP042817.1_3482380_3484648_-	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|186aa|down_6|NZ_CP042817.1_3485573_3486131_-	COG3945, COG3945, Uncharacterized conserved protein [Function unknown]	NA|614aa|down_7|NZ_CP042817.1_3486188_3488030_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|223aa|down_8|NZ_CP042817.1_3488189_3488858_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|80aa|down_9|NZ_CP042817.1_3489388_3489628_-	NA
GCF_008153205.1_ASM815320v1	NZ_CP042817	Treponema phagedenis strain B36.5 chromosome, complete genome	12	3558022-3558303	1	PILER-CR	no		cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	Orphan	ACGGACGCCCGTGGTTCCAAACAGCAACGATGTTTTAGAGCAAAACTATTTGCAAAGCTT	60	2	7	3558082-3558132|3558082-3558132|3558082-3558132|3558193-3558243|3558193-3558243|3558193-3558243|3558193-3558243	NZ_CP042817.1_220628-220578|NZ_CP042817.1_320628-320578|NZ_CP042817.1_420792-420742|NZ_CP042817.1_220628-220578|NZ_CP042817.1_320628-320578|NZ_CP042817.1_420792-420742|NZ_CP042817.1_1869608-1869558	NA	2	2	Orphan	cas3,cas9,DEDDh,WYL,DinG,csx1,csa3,RT	NA|73aa|up_0|NZ_CP042817.1_3557536_3557755_+,NA|594aa|down_0|NZ_CP042817.1_3558464_3560246_+,NA|61aa|down_2|NZ_CP042817.1_3562384_3562567_+,NA|336aa|down_7|NZ_CP042817.1_3569619_3570627_-,NA|226aa|down_8|NZ_CP042817.1_3570638_3571316_-	NA|281aa|up_9|NZ_CP042817.1_3547842_3548685_-	pfam00941, FAD_binding_5, FAD binding domain in molybdopterin dehydrogenase	NA|168aa|up_8|NZ_CP042817.1_3548681_3549185_-	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|687aa|up_7|NZ_CP042817.1_3549138_3551199_-	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]	NA|388aa|up_6|NZ_CP042817.1_3551273_3552437_-	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|206aa|up_5|NZ_CP042817.1_3553153_3553771_+	pfam09605, Trep_Strep, Hypothetical bacterial integral membrane protein (Trep_Strep)	NA|185aa|up_4|NZ_CP042817.1_3553776_3554331_+	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]	NA|233aa|up_3|NZ_CP042817.1_3554327_3555026_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|536aa|up_2|NZ_CP042817.1_3555019_3556627_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|244aa|up_1|NZ_CP042817.1_3556767_3557499_+	pfam13306, LRR_5, Leucine rich repeats (6 copies)	NA|73aa|up_0|NZ_CP042817.1_3557536_3557755_+	NA	NA|594aa|down_0|NZ_CP042817.1_3558464_3560246_+	NA	NA|617aa|down_1|NZ_CP042817.1_3560264_3562115_+	COG0557, VacB, Exoribonuclease R [Transcription]	NA|61aa|down_2|NZ_CP042817.1_3562384_3562567_+	NA	NA|134aa|down_3|NZ_CP042817.1_3562850_3563252_-	TIGR02364, dha_pts, dihydroxyacetone kinase, phosphotransfer subunit	NA|205aa|down_4|NZ_CP042817.1_3563261_3563876_-	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|331aa|down_5|NZ_CP042817.1_3563896_3564889_-	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|733aa|down_6|NZ_CP042817.1_3567428_3569627_-	PRK13341, PRK13341, AAA family ATPase	NA|336aa|down_7|NZ_CP042817.1_3569619_3570627_-	NA	NA|226aa|down_8|NZ_CP042817.1_3570638_3571316_-	NA	NA|294aa|down_9|NZ_CP042817.1_3571482_3572364_+	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
