assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008244725.1_ASM824472v1	NZ_CP043392	Staphylococcus aureus strain NRS384-rpoB-H481N-NCV chromosome, complete genome	1	433777-433877	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_8|NZ_CP043392.1_426383_426767_-,NA|98aa|up_6|NZ_CP043392.1_427720_428014_-,NA|34aa|up_1|NZ_CP043392.1_433001_433103_+,NA|86aa|up_0|NZ_CP043392.1_433310_433568_-,NA|221aa|down_1|NZ_CP043392.1_434967_435630_-,NA|179aa|down_7|NZ_CP043392.1_441721_442258_-	NA|194aa|up_9|NZ_CP043392.1_425736_426318_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|NZ_CP043392.1_426383_426767_-	NA	NA|209aa|up_7|NZ_CP043392.1_427021_427648_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|NZ_CP043392.1_427720_428014_-	NA	NA|508aa|up_5|NZ_CP043392.1_428092_429616_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP043392.1_429631_430201_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP043392.1_430692_431448_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP043392.1_431528_432917_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|NZ_CP043392.1_433001_433103_+	NA	NA|86aa|up_0|NZ_CP043392.1_433310_433568_-	NA	NA|319aa|down_0|NZ_CP043392.1_433893_434850_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP043392.1_434967_435630_-	NA	NA|136aa|down_2|NZ_CP043392.1_435772_436180_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP043392.1_436692_437271_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP043392.1_437270_438539_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP043392.1_438576_440043_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP043392.1_440067_441609_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP043392.1_441721_442258_-	NA	NA|235aa|down_8|NZ_CP043392.1_442650_443355_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP043392.1_443753_444026_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_008244725.1_ASM824472v1	NZ_CP043392	Staphylococcus aureus strain NRS384-rpoB-H481N-NCV chromosome, complete genome	2	678118-678210	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP043392.1_674602_674710_+,NA|169aa|down_4|NZ_CP043392.1_681957_682464_+,NA|239aa|down_5|NZ_CP043392.1_682625_683342_+	NA|313aa|up_9|NZ_CP043392.1_668804_669743_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP043392.1_669953_670490_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP043392.1_670658_671135_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP043392.1_671174_672470_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP043392.1_672497_673019_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP043392.1_673517_674528_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP043392.1_674602_674710_+	NA	NA|128aa|up_2|NZ_CP043392.1_674835_675219_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP043392.1_675215_676877_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP043392.1_677264_677900_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP043392.1_678338_679166_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP043392.1_679313_680264_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP043392.1_680318_681038_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP043392.1_681021_681822_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP043392.1_681957_682464_+	NA	NA|239aa|down_5|NZ_CP043392.1_682625_683342_+	NA	NA|263aa|down_6|NZ_CP043392.1_683510_684299_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP043392.1_684549_684924_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|179aa|down_8|NZ_CP043392.1_686639_687176_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|168aa|down_9|NZ_CP043392.1_687156_687660_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_008244725.1_ASM824472v1	NZ_CP043392	Staphylococcus aureus strain NRS384-rpoB-H481N-NCV chromosome, complete genome	3	853928-854013	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	853958-853983|853958-853983|853958-853983|853958-853983|853958-853983	NZ_CP043392.1_2835954-2835979|NZ_CP043392.1_2836010-2836035|NZ_CP043392.1_816920-816895|NZ_CP043392.1_816976-816951|NZ_CP043392.1_960067-960042	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP043392.1_841180_842020_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP043392.1_842193_842844_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP043392.1_842840_843077_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP043392.1_843345_845331_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP043392.1_845338_848185_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP043392.1_848846_849779_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP043392.1_849784_850624_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP043392.1_850631_851117_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP043392.1_851124_852564_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP043392.1_852630_853566_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP043392.1_854445_855357_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP043392.1_855353_856349_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP043392.1_856458_857403_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP043392.1_857976_858564_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP043392.1_858806_859709_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP043392.1_860410_861040_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP043392.1_861799_862813_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP043392.1_862865_863876_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP043392.1_864014_865205_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP043392.1_865326_866088_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_008244725.1_ASM824472v1	NZ_CP043392	Staphylococcus aureus strain NRS384-rpoB-H481N-NCV chromosome, complete genome	4	897257-897338	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	897281-897314|897281-897314	NZ_CP043392.1_1386274-1386241|NZ_CP043392.1_1475433-1475466	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP043392.1_896159_896273_+,NA	NA|206aa|up_9|NZ_CP043392.1_891014_891632_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP043392.1_891786_892281_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP043392.1_892679_893102_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP043392.1_893249_893966_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP043392.1_894048_894588_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP043392.1_894737_895058_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP043392.1_895201_895558_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP043392.1_895715_896096_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP043392.1_896159_896273_+	NA	NA|293aa|up_0|NZ_CP043392.1_896274_897153_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP043392.1_897894_898281_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP043392.1_898273_898570_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP043392.1_898819_899845_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP043392.1_899837_900533_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP043392.1_900550_901372_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP043392.1_901514_902735_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP043392.1_902822_903551_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP043392.1_903574_904303_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP043392.1_904319_904778_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP043392.1_904789_905122_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_008244725.1_ASM824472v1	NZ_CP043392	Staphylococcus aureus strain NRS384-rpoB-H481N-NCV chromosome, complete genome	5	960068-960350	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	960098-960123|960098-960123|960098-960123|960098-960123|960212-960237|960212-960237	NZ_CP043392.1_960042-960067|NZ_CP043392.1_2835979-2835954|NZ_CP043392.1_2836035-2836010|NZ_CP043392.1_816895-816920|NZ_CP043392.1_854039-854014|NZ_CP043392.1_395110-395135	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP043392.1_948956_950453_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP043392.1_950445_950775_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP043392.1_950786_951215_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP043392.1_951207_953613_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP043392.1_953743_954127_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP043392.1_954190_954784_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP043392.1_955199_955577_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP043392.1_955938_957066_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP043392.1_957373_958564_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP043392.1_958672_959917_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP043392.1_960419_961349_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP043392.1_961590_962970_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP043392.1_962959_964165_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP043392.1_964515_965847_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP043392.1_966171_966747_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP043392.1_966751_967276_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP043392.1_967291_967867_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP043392.1_968026_971503_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP043392.1_971503_975157_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP043392.1_975322_976225_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_008244725.1_ASM824472v1	NZ_CP043392	Staphylococcus aureus strain NRS384-rpoB-H481N-NCV chromosome, complete genome	6	1093740-1093827	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP043392.1_1093616_1093736_+,NA|45aa|down_0|NZ_CP043392.1_1093836_1093971_-,NA|432aa|down_1|NZ_CP043392.1_1094122_1095418_+,NA|68aa|down_2|NZ_CP043392.1_1095438_1095642_-	NA|730aa|up_9|NZ_CP043392.1_1082194_1084384_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP043392.1_1084362_1085847_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP043392.1_1085839_1086868_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP043392.1_1086870_1087437_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP043392.1_1087451_1088930_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP043392.1_1088951_1090199_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP043392.1_1090463_1091270_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP043392.1_1091262_1092663_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP043392.1_1092677_1093253_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP043392.1_1093616_1093736_+	NA	NA|45aa|down_0|NZ_CP043392.1_1093836_1093971_-	NA	NA|432aa|down_1|NZ_CP043392.1_1094122_1095418_+	NA	NA|68aa|down_2|NZ_CP043392.1_1095438_1095642_-	NA	NA|391aa|down_3|NZ_CP043392.1_1095842_1097015_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_4|NZ_CP043392.1_1097068_1097611_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_5|NZ_CP043392.1_1097764_1098031_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_6|NZ_CP043392.1_1098033_1099752_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_7|NZ_CP043392.1_1099988_1100222_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_8|NZ_CP043392.1_1100419_1101781_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_9|NZ_CP043392.1_1101777_1102797_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
GCF_008244725.1_ASM824472v1	NZ_CP043392	Staphylococcus aureus strain NRS384-rpoB-H481N-NCV chromosome, complete genome	7	2035776-2035854	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2035799-2035831|2035799-2035831|2035799-2035831|2035799-2035831|2035799-2035831|2035799-2035831	NZ_CP043392.1_853994-854026|NZ_CP043392.1_1700712-1700744|NZ_CP043392.1_2670604-2670636|NZ_CP043392.1_1178103-1178071|NZ_CP043392.1_1386228-1386196|NZ_CP043392.1_1475479-1475511	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP043392.1_2029970_2030246_+,NA|129aa|up_1|NZ_CP043392.1_2034231_2034618_-,NA|138aa|down_1|NZ_CP043392.1_2037596_2038010_-,NA|37aa|down_2|NZ_CP043392.1_2038038_2038149_-,NA|31aa|down_6|NZ_CP043392.1_2041154_2041247_-	NA|419aa|up_9|NZ_CP043392.1_2027893_2029150_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP043392.1_2029152_2029353_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP043392.1_2029499_2029964_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP043392.1_2029970_2030246_+	NA	NA|406aa|up_5|NZ_CP043392.1_2030523_2031741_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP043392.1_2031856_2032486_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP043392.1_2032475_2033519_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP043392.1_2033515_2034217_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP043392.1_2034231_2034618_-	NA	NA|253aa|up_0|NZ_CP043392.1_2034834_2035593_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP043392.1_2036120_2037107_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP043392.1_2037596_2038010_-	NA	NA|37aa|down_2|NZ_CP043392.1_2038038_2038149_-	NA	NA|244aa|down_3|NZ_CP043392.1_2038234_2038966_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP043392.1_2038967_2040281_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP043392.1_2040572_2041073_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP043392.1_2041154_2041247_-	NA	DEDDh|185aa|down_7|NZ_CP043392.1_2041461_2042016_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP043392.1_2042083_2043154_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP043392.1_2043400_2043931_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_008244725.1_ASM824472v1	NZ_CP043392	Staphylococcus aureus strain NRS384-rpoB-H481N-NCV chromosome, complete genome	8	2270727-2270877	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP043392.1_2265598_2265829_-,NA|364aa|up_0|NZ_CP043392.1_2269617_2270709_+,NA|35aa|down_0|NZ_CP043392.1_2271208_2271313_-,NA|31aa|down_2|NZ_CP043392.1_2273424_2273517_+	NA|237aa|up_9|NZ_CP043392.1_2261208_2261919_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP043392.1_2262039_2262483_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP043392.1_2262682_2263096_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP043392.1_2263553_2264927_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP043392.1_2265598_2265829_-	NA	NA|313aa|up_4|NZ_CP043392.1_2265859_2266798_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP043392.1_2267232_2267898_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP043392.1_2268049_2268370_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP043392.1_2268371_2269352_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP043392.1_2269617_2270709_+	NA	NA|35aa|down_0|NZ_CP043392.1_2271208_2271313_-	NA	NA|379aa|down_1|NZ_CP043392.1_2271999_2273136_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP043392.1_2273424_2273517_+	NA	NA|286aa|down_3|NZ_CP043392.1_2274221_2275079_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP043392.1_2275146_2275929_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP043392.1_2276160_2277966_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP043392.1_2278646_2280185_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP043392.1_2280219_2282352_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP043392.1_2282363_2282798_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP043392.1_2282797_2283904_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_008244725.1_ASM824472v1	NZ_CP043392	Staphylococcus aureus strain NRS384-rpoB-H481N-NCV chromosome, complete genome	9	2394644-2394837	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2394667-2394699|2394667-2394699|2394667-2394699|2394667-2394699|2394667-2394699|2394723-2394758|2394723-2394758|2394723-2394758|2394723-2394758|2394782-2394814|2394782-2394814|2394782-2394814|2394782-2394814	NZ_CP043392.1_853994-854026|NZ_CP043392.1_1475479-1475511|NZ_CP043392.1_2670604-2670636|NZ_CP043392.1_1178103-1178071|NZ_CP043392.1_1386228-1386196|NZ_CP043392.1_1178050-1178015|NZ_CP043392.1_1879200-1879165|NZ_CP043392.1_1700651-1700686|NZ_CP043392.1_2046602-2046637|NZ_CP043392.1_853994-854026|NZ_CP043392.1_2670604-2670636|NZ_CP043392.1_1178103-1178071|NZ_CP043392.1_1386228-1386196	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP043392.1_2385171_2385336_+,NA|106aa|up_8|NZ_CP043392.1_2385580_2385898_+,NA|84aa|up_5|NZ_CP043392.1_2391022_2391274_+,NA|57aa|up_0|NZ_CP043392.1_2394413_2394584_+,NA	NA|55aa|up_9|NZ_CP043392.1_2385171_2385336_+	NA	NA|106aa|up_8|NZ_CP043392.1_2385580_2385898_+	NA	NA|1056aa|up_7|NZ_CP043392.1_2386084_2389252_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP043392.1_2389368_2390634_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP043392.1_2391022_2391274_+	NA	NA|255aa|up_4|NZ_CP043392.1_2391265_2392030_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP043392.1_2392191_2392632_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP043392.1_2392624_2393836_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP043392.1_2393937_2394288_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP043392.1_2394413_2394584_+	NA	NA|341aa|down_0|NZ_CP043392.1_2394978_2396001_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP043392.1_2396020_2396620_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP043392.1_2396626_2396860_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP043392.1_2396865_2397312_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP043392.1_2397325_2397811_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP043392.1_2397807_2399067_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP043392.1_2399129_2399624_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP043392.1_2399625_2400132_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP043392.1_2400162_2401167_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP043392.1_2401336_2401942_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
