assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	1	12526-12615	1	CRISPRCasFinder	no		cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	6	12554-12587|12554-12587|12554-12587|12554-12587|12554-12587|12554-12587	NZ_CP042267.1_127716-127749|NZ_CP042267.1_134664-134697|NZ_CP042267.1_145274-145307|NZ_CP042267.1_3843383-3843350|NZ_CP042267.1_3046679-3046646|NZ_CP042267.1_3983755-3983722	NA	1	1	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|87aa|up_3|NZ_CP042267.1_8856_9117_+,NA|74aa|down_7|NZ_CP042267.1_23205_23427_+,NA|138aa|down_9|NZ_CP042267.1_34040_34454_+	NA|369aa|up_9|NZ_CP042267.1_1561_2668_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|69aa|up_8|NZ_CP042267.1_2804_3011_+	pfam13275, S4_2, S4 domain	NA|372aa|up_7|NZ_CP042267.1_3028_4144_+	PRK00064, recF, recombination protein F; Reviewed	NA|634aa|up_6|NZ_CP042267.1_4144_6046_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|809aa|up_5|NZ_CP042267.1_6065_8492_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|99aa|up_4|NZ_CP042267.1_8560_8857_+	pfam12732, YtxH, YtxH-like protein	NA|87aa|up_3|NZ_CP042267.1_8856_9117_+	NA	NA|104aa|up_2|NZ_CP042267.1_9134_9446_+	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|136aa|up_1|NZ_CP042267.1_9449_9857_+	PRK04069, PRK04069, serine-protein kinase RsbW; Provisional	NA|258aa|up_0|NZ_CP042267.1_9856_10630_+	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily	NA|176aa|down_0|NZ_CP042267.1_16009_16537_+	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|294aa|down_1|NZ_CP042267.1_16548_17430_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|424aa|down_2|NZ_CP042267.1_17888_19160_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|152aa|down_3|NZ_CP042267.1_19480_19936_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|546aa|down_4|NZ_CP042267.1_20406_22044_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|117aa|down_5|NZ_CP042267.1_22102_22453_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|200aa|down_6|NZ_CP042267.1_22465_23065_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|74aa|down_7|NZ_CP042267.1_23205_23427_+	NA	NA|402aa|down_8|NZ_CP042267.1_23497_24703_-	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins	NA|138aa|down_9|NZ_CP042267.1_34040_34454_+	NA
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	2	143234-143312	2	CRISPRCasFinder	no		cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|40aa|down_2|NZ_CP042267.1_157791_157911_+,NA|226aa|down_5|NZ_CP042267.1_160091_160769_+	NA|278aa|up_9|NZ_CP042267.1_120259_121093_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NZ_CP042267.1_121080_121947_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NZ_CP042267.1_121940_122744_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NZ_CP042267.1_122775_123507_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NZ_CP042267.1_123626_124058_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NZ_CP042267.1_124086_124479_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|235aa|up_3|NZ_CP042267.1_124985_125690_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NZ_CP042267.1_138283_139468_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NZ_CP042267.1_139840_142192_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NZ_CP042267.1_142213_142753_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|NZ_CP042267.1_155777_156617_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NZ_CP042267.1_156613_157795_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|40aa|down_2|NZ_CP042267.1_157791_157911_+	NA	NA|301aa|down_3|NZ_CP042267.1_158098_159001_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_4|NZ_CP042267.1_159022_160102_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_5|NZ_CP042267.1_160091_160769_+	NA	NA|72aa|down_6|NZ_CP042267.1_160811_161027_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_7|NZ_CP042267.1_161055_162135_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_8|NZ_CP042267.1_162134_162887_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_9|NZ_CP042267.1_162887_163445_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	3	973500-973662	3	CRISPRCasFinder	no		cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	AGCAGAAGGTGAAAAAGAATCTGCAATATTA	31	0	0	NA	NA	NA	2	2	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA	NA|359aa|up_9|NZ_CP042267.1_961749_962826_+	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|186aa|up_8|NZ_CP042267.1_962831_963389_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|341aa|up_7|NZ_CP042267.1_963552_964575_-	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|252aa|up_6|NZ_CP042267.1_964705_965461_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|301aa|up_5|NZ_CP042267.1_965447_966350_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|346aa|up_4|NZ_CP042267.1_967158_968196_-	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|252aa|up_3|NZ_CP042267.1_968292_969048_-	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|301aa|up_2|NZ_CP042267.1_969034_969937_-	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|527aa|up_1|NZ_CP042267.1_970735_972316_+	COG0063, COG0063, Predicted sugar kinase [Carbohydrate transport and metabolism]	NA|149aa|up_0|NZ_CP042267.1_972493_972940_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|387aa|down_0|NZ_CP042267.1_974774_975935_+	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|377aa|down_1|NZ_CP042267.1_975936_977067_+	TIGR02092, Glycogen_biosynthesis_protein_GlgD, glucose-1-phosphate adenylyltransferase, GlgD subunit	NA|481aa|down_2|NZ_CP042267.1_977095_978538_+	cd03791, GT5_Glycogen_synthase_DULL1-like, Glycogen synthase GlgA and similar proteins	NA|814aa|down_3|NZ_CP042267.1_978530_980972_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|622aa|down_4|NZ_CP042267.1_980976_982842_+	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|218aa|down_5|NZ_CP042267.1_983086_983740_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|492aa|down_6|NZ_CP042267.1_984377_985853_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|138aa|down_7|NZ_CP042267.1_985939_986353_+	TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase proenzyme, Bacillus form	NA|284aa|down_8|NZ_CP042267.1_986382_987234_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|293aa|down_9|NZ_CP042267.1_987223_988102_+	cd11593, Agmatinase-like_2, Agmatinase and related proteins
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	4	1267555-1267972	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATTTTATATTAACTATGTGGTATGTAAAG,ATTTTATATTAACTATGTGGTATGTAAAG,ATTTTATATTAACTATGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,6,6	6	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|51aa|up_0|NZ_CP042267.1_1267113_1267266_+,NA|62aa|down_2|NZ_CP042267.1_1270224_1270410_+,NA|85aa|down_4|NZ_CP042267.1_1271665_1271920_+,NA|84aa|down_5|NZ_CP042267.1_1271955_1272207_+,NA|148aa|down_9|NZ_CP042267.1_1276025_1276469_+	NA|271aa|up_9|NZ_CP042267.1_1255029_1255842_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|447aa|up_8|NZ_CP042267.1_1256030_1257371_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_7|NZ_CP042267.1_1257583_1258663_+	pfam02618, YceG, YceG-like family	NA|225aa|up_6|NZ_CP042267.1_1258834_1259509_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_5|NZ_CP042267.1_1259495_1260743_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_4|NZ_CP042267.1_1260814_1262479_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|506aa|up_3|NZ_CP042267.1_1262882_1264400_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_2|NZ_CP042267.1_1264524_1265346_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_1|NZ_CP042267.1_1265536_1266964_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|51aa|up_0|NZ_CP042267.1_1267113_1267266_+	NA	NA|72aa|down_0|NZ_CP042267.1_1268145_1268361_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|119aa|down_1|NZ_CP042267.1_1269705_1270062_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|62aa|down_2|NZ_CP042267.1_1270224_1270410_+	NA	NA|247aa|down_3|NZ_CP042267.1_1270529_1271270_+	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|85aa|down_4|NZ_CP042267.1_1271665_1271920_+	NA	NA|84aa|down_5|NZ_CP042267.1_1271955_1272207_+	NA	NA|393aa|down_6|NZ_CP042267.1_1272791_1273970_+	pfam00176, SNF2_N, SNF2 family N-terminal domain	NA|101aa|down_7|NZ_CP042267.1_1273973_1274276_+	smart00990, VRR_NUC, This model contains proteins with the VRR-NUC domain	NA|562aa|down_8|NZ_CP042267.1_1274276_1275962_+	pfam13479, AAA_24, AAA domain	NA|148aa|down_9|NZ_CP042267.1_1276025_1276469_+	NA
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	5	1520969-1521457	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	DinG	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,7,7	7	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|183aa|up_4|NZ_CP042267.1_1516075_1516624_-,NA|51aa|up_0|NZ_CP042267.1_1520536_1520689_+,NA|80aa|down_4|NZ_CP042267.1_1528602_1528842_+,NA|59aa|down_5|NZ_CP042267.1_1529028_1529205_-,NA|45aa|down_9|NZ_CP042267.1_1531831_1531966_+	NA|260aa|up_9|NZ_CP042267.1_1510391_1511171_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|195aa|up_8|NZ_CP042267.1_1511274_1511859_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|477aa|up_7|NZ_CP042267.1_1512058_1513489_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_6|NZ_CP042267.1_1513806_1514751_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_5|NZ_CP042267.1_1515021_1515957_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|183aa|up_4|NZ_CP042267.1_1516075_1516624_-	NA	NA|143aa|up_3|NZ_CP042267.1_1516775_1517204_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|223aa|up_2|NZ_CP042267.1_1517270_1517939_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_1|NZ_CP042267.1_1518056_1519412_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|51aa|up_0|NZ_CP042267.1_1520536_1520689_+	NA	NA|578aa|down_0|NZ_CP042267.1_1521782_1523516_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|NZ_CP042267.1_1523755_1524601_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|NZ_CP042267.1_1524631_1526866_-	cd01948, EAL, EAL domain	NA|270aa|down_3|NZ_CP042267.1_1527648_1528458_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|NZ_CP042267.1_1528602_1528842_+	NA	NA|59aa|down_5|NZ_CP042267.1_1529028_1529205_-	NA	NA|225aa|down_6|NZ_CP042267.1_1529709_1530384_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|185aa|down_7|NZ_CP042267.1_1530603_1531158_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|122aa|down_8|NZ_CP042267.1_1531235_1531601_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|45aa|down_9|NZ_CP042267.1_1531831_1531966_+	NA
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	6	1631749-1632439	6,3	CRISPRCasFinder,CRT	no	cas14j	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29	0	0	NA	NA	I-A:I-A	10,10	10	TypeV	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|50aa|up_9|NZ_CP042267.1_1620575_1620725_+,NA|190aa|up_7|NZ_CP042267.1_1621639_1622209_+,NA|61aa|up_4|NZ_CP042267.1_1625158_1625341_-,NA|323aa|down_4|NZ_CP042267.1_1637352_1638321_+	NA|50aa|up_9|NZ_CP042267.1_1620575_1620725_+	NA	NA|300aa|up_8|NZ_CP042267.1_1620735_1621635_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|NZ_CP042267.1_1621639_1622209_+	NA	NA|216aa|up_6|NZ_CP042267.1_1622375_1623023_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|NZ_CP042267.1_1623412_1624327_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|NZ_CP042267.1_1625158_1625341_-	NA	NA|283aa|up_3|NZ_CP042267.1_1625751_1626600_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|NZ_CP042267.1_1626618_1627446_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|308aa|up_1|NZ_CP042267.1_1627420_1628344_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|NZ_CP042267.1_1628996_1631090_+	cd01948, EAL, EAL domain	NA|273aa|down_0|NZ_CP042267.1_1633088_1633907_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_1|NZ_CP042267.1_1634039_1636160_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_2|NZ_CP042267.1_1636185_1636413_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_3|NZ_CP042267.1_1636739_1637180_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|323aa|down_4|NZ_CP042267.1_1637352_1638321_+	NA	NA|403aa|down_5|NZ_CP042267.1_1638797_1640006_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_6|NZ_CP042267.1_1640066_1640948_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|305aa|down_7|NZ_CP042267.1_1641363_1642278_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_8|NZ_CP042267.1_1642500_1643046_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain	NA|383aa|down_9|NZ_CP042267.1_1643145_1644294_+	COG2006, COG2006, Uncharacterized conserved protein [Function unknown]
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	7	1722152-1722378	3,7,4	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	2,3,3	3	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|121aa|up_9|NZ_CP042267.1_1717441_1717804_+,NA|146aa|up_7|NZ_CP042267.1_1718221_1718659_+,NA|59aa|up_6|NZ_CP042267.1_1718651_1718828_+,NA|86aa|up_3|NZ_CP042267.1_1720688_1720946_+,NA|65aa|up_1|NZ_CP042267.1_1721390_1721585_+,NA|53aa|up_0|NZ_CP042267.1_1721713_1721872_+,NA|63aa|down_0|NZ_CP042267.1_1722588_1722777_+	NA|121aa|up_9|NZ_CP042267.1_1717441_1717804_+	NA	NA|142aa|up_8|NZ_CP042267.1_1717803_1718229_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_7|NZ_CP042267.1_1718221_1718659_+	NA	NA|59aa|up_6|NZ_CP042267.1_1718651_1718828_+	NA	NA|437aa|up_5|NZ_CP042267.1_1718828_1720139_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|159aa|up_4|NZ_CP042267.1_1720159_1720636_+	pfam09393, DUF2001, Phage tail tube protein	NA|86aa|up_3|NZ_CP042267.1_1720688_1720946_+	NA	NA|147aa|up_2|NZ_CP042267.1_1720950_1721391_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|65aa|up_1|NZ_CP042267.1_1721390_1721585_+	NA	NA|53aa|up_0|NZ_CP042267.1_1721713_1721872_+	NA	NA|63aa|down_0|NZ_CP042267.1_1722588_1722777_+	NA	NA|275aa|down_1|NZ_CP042267.1_1722896_1723721_+	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|173aa|down_2|NZ_CP042267.1_1724003_1724522_+	pfam13240, zinc_ribbon_2, zinc-ribbon domain	NA|798aa|down_3|NZ_CP042267.1_1724603_1726997_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|234aa|down_4|NZ_CP042267.1_1727012_1727714_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|652aa|down_5|NZ_CP042267.1_1727706_1729662_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_6|NZ_CP042267.1_1729675_1729936_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_7|NZ_CP042267.1_1729940_1730360_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_8|NZ_CP042267.1_1730360_1731410_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_9|NZ_CP042267.1_1731402_1732020_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	8	1860622-1862026	4,8,5	PILER-CR,CRISPRCasFinder,CRT	no		cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	18,21,21	21	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|96aa|down_0|NZ_CP042267.1_1862434_1862722_+,NA|59aa|down_5|NZ_CP042267.1_1869008_1869185_-,NA|341aa|down_6|NZ_CP042267.1_1869759_1870782_+,NA|258aa|down_8|NZ_CP042267.1_1871688_1872462_+	NA|266aa|up_9|NZ_CP042267.1_1844856_1845654_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|329aa|up_8|NZ_CP042267.1_1845963_1846950_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|577aa|up_7|NZ_CP042267.1_1847433_1849164_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_6|NZ_CP042267.1_1849688_1850204_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_5|NZ_CP042267.1_1851009_1853484_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_4|NZ_CP042267.1_1853483_1854941_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_3|NZ_CP042267.1_1855359_1857717_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_2|NZ_CP042267.1_1857802_1858120_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|424aa|up_1|NZ_CP042267.1_1858703_1859975_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|59aa|up_0|NZ_CP042267.1_1860194_1860371_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|96aa|down_0|NZ_CP042267.1_1862434_1862722_+	NA	NA|184aa|down_1|NZ_CP042267.1_1863260_1863812_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_2|NZ_CP042267.1_1864002_1864965_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_3|NZ_CP042267.1_1865258_1867103_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|177aa|down_4|NZ_CP042267.1_1867375_1867906_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_5|NZ_CP042267.1_1869008_1869185_-	NA	NA|341aa|down_6|NZ_CP042267.1_1869759_1870782_+	NA	NA|296aa|down_7|NZ_CP042267.1_1870795_1871683_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_8|NZ_CP042267.1_1871688_1872462_+	NA	NA|242aa|down_9|NZ_CP042267.1_1872573_1873299_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	9	2178607-2178965	9,6,5	CRISPRCasFinder,CRT,PILER-CR	no	cas14j,csa3	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type I-A	CTTTACATACCACATAGTTGATATAAAAC,CTTTACATACCACATAGTTGATATAAAAC,GTTTTATATCAACTATGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	5,5,5	5	TypeV,TypeI-A	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|59aa|up_5|NZ_CP042267.1_2173400_2173577_+,NA|133aa|up_3|NZ_CP042267.1_2175108_2175507_-,NA|59aa|up_1|NZ_CP042267.1_2177640_2177817_+,NA|55aa|down_2|NZ_CP042267.1_2180513_2180678_-,NA|20aa|down_6|NZ_CP042267.1_2183108_2183168_+,NA|45aa|down_7|NZ_CP042267.1_2183338_2183473_-	NA|204aa|up_9|NZ_CP042267.1_2168105_2168717_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|113aa|up_8|NZ_CP042267.1_2169014_2169353_+	pfam12650, DUF3784, Domain of unknown function (DUF3784)	NA|479aa|up_7|NZ_CP042267.1_2169759_2171196_-	PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|479aa|up_6|NZ_CP042267.1_2171443_2172880_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|59aa|up_5|NZ_CP042267.1_2173400_2173577_+	NA	NA|184aa|up_4|NZ_CP042267.1_2173707_2174259_-	pfam17099, TrpP, Tryptophan transporter TrpP	NA|133aa|up_3|NZ_CP042267.1_2175108_2175507_-	NA	NA|162aa|up_2|NZ_CP042267.1_2175862_2176348_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|59aa|up_1|NZ_CP042267.1_2177640_2177817_+	NA	NA|67aa|up_0|NZ_CP042267.1_2178042_2178243_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|61aa|down_0|NZ_CP042267.1_2179191_2179374_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|282aa|down_1|NZ_CP042267.1_2179444_2180290_+	pfam13026, DUF3887, Protein of unknown function (DUF3887)	NA|55aa|down_2|NZ_CP042267.1_2180513_2180678_-	NA	NA|111aa|down_3|NZ_CP042267.1_2181218_2181551_-	pfam02627, CMD, Carboxymuconolactone decarboxylase family	NA|214aa|down_4|NZ_CP042267.1_2181794_2182436_-	COG5658, COG5658, Predicted integral membrane protein [Function unknown]	csa3|99aa|down_5|NZ_CP042267.1_2182416_2182713_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|20aa|down_6|NZ_CP042267.1_2183108_2183168_+	NA	NA|45aa|down_7|NZ_CP042267.1_2183338_2183473_-	NA	NA|251aa|down_8|NZ_CP042267.1_2183683_2184436_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|552aa|down_9|NZ_CP042267.1_2184494_2186150_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	10	2253838-2254921	10,7,6	CRISPRCasFinder,CRT,PILER-CR	no		cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATTTACATTCCATATAGTTAATATAAAAC,ATTTACATTCCATATAGTTAATATAAAAC,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	2	2	2254195-2254230|2254196-2254231	NZ_CP042267.1_2120231-2120196|NZ_CP042267.1_2120231-2120196	I-A:I-A:I-A	16,16,15	16	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|43aa|up_4|NZ_CP042267.1_2251650_2251779_+,NA|58aa|up_1|NZ_CP042267.1_2253054_2253228_+,NA|98aa|up_0|NZ_CP042267.1_2253384_2253678_-,NA|80aa|down_7|NZ_CP042267.1_2263130_2263370_-,NA|216aa|down_8|NZ_CP042267.1_2263540_2264188_-,NA|567aa|down_9|NZ_CP042267.1_2264327_2266028_-	NA|406aa|up_9|NZ_CP042267.1_2244496_2245714_-	cd02152, OAT, Ornithine acetyltransferase (OAT) family; also referred to as ArgJ	NA|345aa|up_8|NZ_CP042267.1_2245754_2246789_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|158aa|up_7|NZ_CP042267.1_2248538_2249012_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|186aa|up_6|NZ_CP042267.1_2249380_2249938_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|233aa|up_5|NZ_CP042267.1_2250195_2250894_+	TIGR03502, lipase_Pla1_cef, extracellular lipase, Pla-1/cef family	NA|43aa|up_4|NZ_CP042267.1_2251650_2251779_+	NA	NA|156aa|up_3|NZ_CP042267.1_2251916_2252384_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|72aa|up_2|NZ_CP042267.1_2252394_2252610_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|58aa|up_1|NZ_CP042267.1_2253054_2253228_+	NA	NA|98aa|up_0|NZ_CP042267.1_2253384_2253678_-	NA	NA|291aa|down_0|NZ_CP042267.1_2255751_2256624_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|193aa|down_1|NZ_CP042267.1_2257017_2257596_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|239aa|down_2|NZ_CP042267.1_2257653_2258370_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|362aa|down_3|NZ_CP042267.1_2258560_2259646_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|220aa|down_4|NZ_CP042267.1_2259800_2260460_-	pfam03154, Atrophin-1, Atrophin-1 family	NA|431aa|down_5|NZ_CP042267.1_2260676_2261969_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|398aa|down_6|NZ_CP042267.1_2261986_2263180_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|80aa|down_7|NZ_CP042267.1_2263130_2263370_-	NA	NA|216aa|down_8|NZ_CP042267.1_2263540_2264188_-	NA	NA|567aa|down_9|NZ_CP042267.1_2264327_2266028_-	NA
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	11	2556160-2556980	8,11,7	CRT,CRISPRCasFinder,PILER-CR	no		cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	AATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	30,29,29	0	0	NA	NA	NA:I-A:I-A	12,12,11	12	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|138aa|up_6|NZ_CP042267.1_2552412_2552826_+,NA|99aa|up_5|NZ_CP042267.1_2552844_2553141_+,NA|106aa|up_4|NZ_CP042267.1_2553423_2553741_+,NA|155aa|up_3|NZ_CP042267.1_2553876_2554341_+,NA|54aa|up_2|NZ_CP042267.1_2554669_2554831_-,NA|132aa|up_1|NZ_CP042267.1_2554882_2555278_-,NA|51aa|down_0|NZ_CP042267.1_2558347_2558500_-,NA|111aa|down_1|NZ_CP042267.1_2558772_2559105_-,NA|85aa|down_2|NZ_CP042267.1_2559131_2559386_-,NA|56aa|down_3|NZ_CP042267.1_2559534_2559702_-,NA|57aa|down_6|NZ_CP042267.1_2563177_2563348_+,NA|59aa|down_9|NZ_CP042267.1_2565050_2565227_+	NA|231aa|up_9|NZ_CP042267.1_2550298_2550991_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|125aa|up_8|NZ_CP042267.1_2551602_2551977_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|78aa|up_7|NZ_CP042267.1_2552195_2552429_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|138aa|up_6|NZ_CP042267.1_2552412_2552826_+	NA	NA|99aa|up_5|NZ_CP042267.1_2552844_2553141_+	NA	NA|106aa|up_4|NZ_CP042267.1_2553423_2553741_+	NA	NA|155aa|up_3|NZ_CP042267.1_2553876_2554341_+	NA	NA|54aa|up_2|NZ_CP042267.1_2554669_2554831_-	NA	NA|132aa|up_1|NZ_CP042267.1_2554882_2555278_-	NA	NA|122aa|up_0|NZ_CP042267.1_2555331_2555697_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|51aa|down_0|NZ_CP042267.1_2558347_2558500_-	NA	NA|111aa|down_1|NZ_CP042267.1_2558772_2559105_-	NA	NA|85aa|down_2|NZ_CP042267.1_2559131_2559386_-	NA	NA|56aa|down_3|NZ_CP042267.1_2559534_2559702_-	NA	NA|126aa|down_4|NZ_CP042267.1_2561113_2561491_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|165aa|down_5|NZ_CP042267.1_2562294_2562789_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|57aa|down_6|NZ_CP042267.1_2563177_2563348_+	NA	NA|117aa|down_7|NZ_CP042267.1_2564175_2564526_+	pfam12676, DUF3796, Protein of unknown function (DUF3796)	NA|67aa|down_8|NZ_CP042267.1_2564527_2564728_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|59aa|down_9|NZ_CP042267.1_2565050_2565227_+	NA
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	12	2720057-2720214	8	PILER-CR	no	cas3,cas5,cas7,cas6	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AGGTTTAAGATTAACTAAGTGGATTTCA	28	0	0	NA	NA	NA	2	2	Unclear	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|489aa|down_3|NZ_CP042267.1_2724637_2726104_-,NA|39aa|down_9|NZ_CP042267.1_2732632_2732749_-	NA|448aa|up_9|NZ_CP042267.1_2712513_2713857_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|81aa|up_8|NZ_CP042267.1_2713869_2714112_-	pfam07873, YabP, YabP family	NA|188aa|up_7|NZ_CP042267.1_2714318_2714882_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|NZ_CP042267.1_2715074_2715572_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|NZ_CP042267.1_2715682_2716126_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|NZ_CP042267.1_2716155_2716335_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|NZ_CP042267.1_2716497_2716848_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|NZ_CP042267.1_2716890_2718189_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|NZ_CP042267.1_2718190_2718949_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|NZ_CP042267.1_2718967_2719915_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|NZ_CP042267.1_2720356_2722765_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|266aa|down_1|NZ_CP042267.1_2722791_2723589_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|338aa|down_2|NZ_CP042267.1_2723604_2724618_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|489aa|down_3|NZ_CP042267.1_2724637_2726104_-	NA	cas6|246aa|down_4|NZ_CP042267.1_2726108_2726846_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|370aa|down_5|NZ_CP042267.1_2727556_2728666_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_6|NZ_CP042267.1_2728695_2729463_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|458aa|down_7|NZ_CP042267.1_2729650_2731024_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_8|NZ_CP042267.1_2731059_2731995_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|39aa|down_9|NZ_CP042267.1_2732632_2732749_-	NA
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	13	3033642-3033967	12	CRISPRCasFinder	no		cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTACCATCTATTTGTTGCCATCCTGT	26	0	0	NA	NA	NA	5	5	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|107aa|down_2|NZ_CP042267.1_3036830_3037151_-,NA|664aa|down_3|NZ_CP042267.1_3037140_3039132_-,NA|458aa|down_7|NZ_CP042267.1_3049960_3051334_-	NA|218aa|up_9|NZ_CP042267.1_3018643_3019297_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|448aa|up_8|NZ_CP042267.1_3019799_3021143_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|455aa|up_7|NZ_CP042267.1_3021321_3022686_+	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|623aa|up_6|NZ_CP042267.1_3022863_3024732_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|406aa|up_5|NZ_CP042267.1_3024964_3026182_-	cd17396, MFS_YdiM_like, Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters	NA|288aa|up_4|NZ_CP042267.1_3026381_3027245_-	PRK12548, PRK12548, shikimate dehydrogenase	NA|641aa|up_3|NZ_CP042267.1_3027326_3029249_-	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|283aa|up_2|NZ_CP042267.1_3029312_3030161_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|294aa|up_1|NZ_CP042267.1_3030573_3031455_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|280aa|up_0|NZ_CP042267.1_3031662_3032502_-	cd01027, TOPRIM_RNase_M5_like, TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea	NA|338aa|down_0|NZ_CP042267.1_3034726_3035740_-	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|292aa|down_1|NZ_CP042267.1_3035763_3036639_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|107aa|down_2|NZ_CP042267.1_3036830_3037151_-	NA	NA|664aa|down_3|NZ_CP042267.1_3037140_3039132_-	NA	NA|858aa|down_4|NZ_CP042267.1_3039253_3041827_-	TIGR02794, Protein_TolA, TolA protein	NA|226aa|down_5|NZ_CP042267.1_3042570_3043248_+	cd05826, Sortase_B, Sortase domain found in class B sortases	NA|313aa|down_6|NZ_CP042267.1_3048637_3049576_+	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs	NA|458aa|down_7|NZ_CP042267.1_3049960_3051334_-	NA	NA|441aa|down_8|NZ_CP042267.1_3051520_3052843_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|235aa|down_9|NZ_CP042267.1_3052835_3053540_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	14	3088466-3088773	13	CRISPRCasFinder	no		cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	4	4	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP042267.1_3090066_3090732_+	NA|205aa|up_9|NZ_CP042267.1_3076626_3077241_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP042267.1_3077255_3077705_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP042267.1_3077729_3079937_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP042267.1_3080010_3080523_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP042267.1_3080535_3082986_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP042267.1_3082998_3084663_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP042267.1_3084960_3085458_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP042267.1_3085486_3086866_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP042267.1_3087170_3087317_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP042267.1_3087346_3087925_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP042267.1_3090066_3090732_+	NA	NA|901aa|down_1|NZ_CP042267.1_3091237_3093940_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP042267.1_3093965_3095516_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP042267.1_3095837_3097550_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP042267.1_3097903_3098164_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP042267.1_3098356_3099568_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP042267.1_3099799_3101533_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP042267.1_3101572_3101971_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP042267.1_3101973_3103521_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP042267.1_3103835_3104741_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	15	3088880-3089169	14	CRISPRCasFinder	no		cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	4	4	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP042267.1_3090066_3090732_+	NA|205aa|up_9|NZ_CP042267.1_3076626_3077241_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP042267.1_3077255_3077705_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP042267.1_3077729_3079937_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP042267.1_3080010_3080523_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP042267.1_3080535_3082986_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP042267.1_3082998_3084663_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP042267.1_3084960_3085458_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP042267.1_3085486_3086866_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP042267.1_3087170_3087317_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP042267.1_3087346_3087925_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP042267.1_3090066_3090732_+	NA	NA|901aa|down_1|NZ_CP042267.1_3091237_3093940_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP042267.1_3093965_3095516_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP042267.1_3095837_3097550_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP042267.1_3097903_3098164_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP042267.1_3098356_3099568_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP042267.1_3099799_3101533_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP042267.1_3101572_3101971_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP042267.1_3101973_3103521_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP042267.1_3103835_3104741_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	16	3089372-3089462	15	CRISPRCasFinder	no		cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP042267.1_3090066_3090732_+	NA|205aa|up_9|NZ_CP042267.1_3076626_3077241_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP042267.1_3077255_3077705_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP042267.1_3077729_3079937_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP042267.1_3080010_3080523_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP042267.1_3080535_3082986_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP042267.1_3082998_3084663_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP042267.1_3084960_3085458_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP042267.1_3085486_3086866_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP042267.1_3087170_3087317_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP042267.1_3087346_3087925_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP042267.1_3090066_3090732_+	NA	NA|901aa|down_1|NZ_CP042267.1_3091237_3093940_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP042267.1_3093965_3095516_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP042267.1_3095837_3097550_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP042267.1_3097903_3098164_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP042267.1_3098356_3099568_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP042267.1_3099799_3101533_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP042267.1_3101572_3101971_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP042267.1_3101973_3103521_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP042267.1_3103835_3104741_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	17	3300864-3301744	16,9,9,17	CRISPRCasFinder,CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT,ATTTACATACCACTTAGTTAATATAAAAC	29,29,29,29	0	0	NA	NA	I-A:I-A:I-A:I-A	11,13,10,11	13	Unclear	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|NZ_CP042267.1_3293756_3293957_+,NA|260aa|up_1|NZ_CP042267.1_3299139_3299919_+,NA	NA|740aa|up_9|NZ_CP042267.1_3288103_3290323_-	cd01948, EAL, EAL domain	NA|885aa|up_8|NZ_CP042267.1_3290598_3293253_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|NZ_CP042267.1_3293756_3293957_+	NA	NA|197aa|up_6|NZ_CP042267.1_3294163_3294754_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|NZ_CP042267.1_3294756_3295632_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|NZ_CP042267.1_3295707_3297099_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|NZ_CP042267.1_3297102_3298239_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|NZ_CP042267.1_3298270_3298816_-	pfam02632, BioY, BioY family	NA|260aa|up_1|NZ_CP042267.1_3299139_3299919_+	NA	NA|143aa|up_0|NZ_CP042267.1_3300374_3300803_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|NZ_CP042267.1_3301927_3302194_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NZ_CP042267.1_3302196_3303177_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|173aa|down_2|NZ_CP042267.1_3303179_3303698_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|NZ_CP042267.1_3303745_3306067_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|NZ_CP042267.1_3306077_3306779_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|NZ_CP042267.1_3306780_3307695_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|617aa|down_6|NZ_CP042267.1_3307696_3309547_-	pfam09706, Cas_CXXC_CXXC, CRISPR-associated protein (Cas_CXXC_CXXC)	cas6|246aa|down_7|NZ_CP042267.1_3309552_3310290_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|306aa|down_8|NZ_CP042267.1_3310367_3311285_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|NZ_CP042267.1_3311564_3313481_-	pfam02687, FtsX, FtsX-like permease family
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	18	3636633-3636754	18	CRISPRCasFinder	no		cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTCATCATATAAACCTATTAAATATTATCCTATTTATTGGTATATG	46	0	0	NA	NA	NA	1	1	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|48aa|down_3|NZ_CP042267.1_3641229_3641373_+	NA|85aa|up_9|NZ_CP042267.1_3625620_3625875_-	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|373aa|up_8|NZ_CP042267.1_3625996_3627115_-	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|398aa|up_7|NZ_CP042267.1_3627320_3628514_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|294aa|up_6|NZ_CP042267.1_3628836_3629718_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|334aa|up_5|NZ_CP042267.1_3630142_3631144_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|296aa|up_4|NZ_CP042267.1_3631260_3632148_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|250aa|up_3|NZ_CP042267.1_3632214_3632964_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|239aa|up_2|NZ_CP042267.1_3633187_3633904_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|330aa|up_1|NZ_CP042267.1_3634259_3635249_-	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|252aa|up_0|NZ_CP042267.1_3635688_3636444_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|556aa|down_0|NZ_CP042267.1_3636797_3638465_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|180aa|down_1|NZ_CP042267.1_3638842_3639382_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|428aa|down_2|NZ_CP042267.1_3639709_3640993_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|48aa|down_3|NZ_CP042267.1_3641229_3641373_+	NA	NA|592aa|down_4|NZ_CP042267.1_3641441_3643217_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|190aa|down_5|NZ_CP042267.1_3643428_3643998_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|212aa|down_6|NZ_CP042267.1_3644181_3644817_-	PRK05813, PRK05813, single-stranded DNA-binding protein; Provisional	NA|294aa|down_7|NZ_CP042267.1_3645484_3646366_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|336aa|down_8|NZ_CP042267.1_3646485_3647493_-	PRK13969, PRK13969, proline racemase; Provisional	NA|161aa|down_9|NZ_CP042267.1_3647512_3647995_-	TIGR04480, D-proline_reductase_PrdA_proprotein, D-proline reductase (dithiol), PrdA proprotein
GCF_008245165.1_ASM824516v1	NZ_CP042267	Clostridioides difficile strain Mta-79 chromosome, complete genome	19	3637229-3638407	10	CRT	no		cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	CTGTTGNNCCNGTTNNNCCNNTTGCTC	27	0	0	NA	NA	NA	16	16	Orphan	cas14j,cas14k,csa3,WYL,cas3,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|48aa|down_2|NZ_CP042267.1_3641229_3641373_+	NA|85aa|up_9|NZ_CP042267.1_3625620_3625875_-	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|373aa|up_8|NZ_CP042267.1_3625996_3627115_-	cd05670, M20_Acy1_YkuR-like, M20 Peptidase aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	NA|398aa|up_7|NZ_CP042267.1_3627320_3628514_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|294aa|up_6|NZ_CP042267.1_3628836_3629718_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|334aa|up_5|NZ_CP042267.1_3630142_3631144_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|296aa|up_4|NZ_CP042267.1_3631260_3632148_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|250aa|up_3|NZ_CP042267.1_3632214_3632964_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|239aa|up_2|NZ_CP042267.1_3633187_3633904_+	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	NA|330aa|up_1|NZ_CP042267.1_3634259_3635249_-	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|252aa|up_0|NZ_CP042267.1_3635688_3636444_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|180aa|down_0|NZ_CP042267.1_3638842_3639382_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|428aa|down_1|NZ_CP042267.1_3639709_3640993_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|48aa|down_2|NZ_CP042267.1_3641229_3641373_+	NA	NA|592aa|down_3|NZ_CP042267.1_3641441_3643217_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|190aa|down_4|NZ_CP042267.1_3643428_3643998_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|212aa|down_5|NZ_CP042267.1_3644181_3644817_-	PRK05813, PRK05813, single-stranded DNA-binding protein; Provisional	NA|294aa|down_6|NZ_CP042267.1_3645484_3646366_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|336aa|down_7|NZ_CP042267.1_3646485_3647493_-	PRK13969, PRK13969, proline racemase; Provisional	NA|161aa|down_8|NZ_CP042267.1_3647512_3647995_-	TIGR04480, D-proline_reductase_PrdA_proprotein, D-proline reductase (dithiol), PrdA proprotein	NA|156aa|down_9|NZ_CP042267.1_3648012_3648480_-	TIGR04480, D-proline_reductase_PrdA_proprotein, D-proline reductase (dithiol), PrdA proprotein
