The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP038808	Streptococcus pneumoniae strain R6CIB17 chromosome, complete genome	2038617	41901	53357	2038617		Synechococcus_phage(33.33%)	8	NA	NA
WP_000668290.1|41901_44055_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.0	1.0e-44
WP_000801613.1|44067_45417_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_010976373.1|45544_46294_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	38.8	7.1e-41
WP_050167432.1|46295_46439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000361172.1|46495_50221_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.8	2.1e-37
WP_000220650.1|50313_51756_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.4	2.6e-55
WP_000182582.1|51792_52815_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.6e-64
WP_000717506.1|52811_53357_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 2
NZ_CP038808	Streptococcus pneumoniae strain R6CIB17 chromosome, complete genome	2038617	105241	137520	2038617	bacteriocin,tRNA	Planktothrix_phage(33.33%)	35	NA	NA
WP_000227119.1|105241_105490_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000723959.1|105544_107653_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571330.1|107649_108291_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
WP_001038474.1|108496_109303_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001814401.1|109319_110516_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_001107614.1|110544_111936_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_001268172.1|112224_113088_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000915344.1|113553_113775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000093185.1|113907_115773_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	25.7	2.5e-39
WP_001096142.1|115765_116233_+	GyrI-like domain-containing protein	NA	NA	NA	NA	NA
WP_000781030.1|116229_117582_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000424424.1|117727_118108_+|bacteriocin	SP_0115 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_014632394.1|118109_118316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001811647.1|118610_118931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000424429.1|119687_120059_+|bacteriocin	SPH_0218 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000909533.1|120066_120279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001812342.1|121083_122142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010976387.1|122440_123433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424414.1|123809_124184_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000511668.1|124190_124373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000619760.1|124391_125294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010976388.1|125316_125703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010976389.1|125669_126428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000680086.1|126906_127104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010976390.1|127502_127802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001819759.1|127786_128065_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	50.5	2.5e-20
WP_001035315.1|128355_130215_+	pneumococcal surface protein A	NA	NA	NA	NA	NA
WP_001282986.1|130615_131737_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_010976392.1|131850_132333_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000639151.1|132342_134256_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_000331983.1|134635_136315_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639589.1|136316_136550_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_000184680.1|136933_137155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001844323.1|137176_137374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000977347.1|137367_137520_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
>prophage 3
NZ_CP038808	Streptococcus pneumoniae strain R6CIB17 chromosome, complete genome	2038617	318313	323706	2038617		Escherichia_phage(33.33%)	6	NA	NA
WP_000685095.1|318313_319552_+	nucleotide sugar dehydrogenase	NA	M1I6D5	Acanthocystis_turfacea_Chlorella_virus	49.9	3.3e-104
WP_001819836.1|319580_320186_+	UDP-galactopuranose mutase	NA	E4ZFQ1	Streptococcus_phage	62.6	1.7e-69
WP_000676152.1|320263_321133_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	64.6	2.2e-102
WP_000131446.1|321133_321727_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	33.1	3.9e-10
WP_000141499.1|321739_322789_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.5	8.3e-72
WP_000600899.1|322854_323706_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.4	1.5e-26
>prophage 4
NZ_CP038808	Streptococcus pneumoniae strain R6CIB17 chromosome, complete genome	2038617	830981	840519	2038617		Streptococcus_phage(88.89%)	10	NA	NA
WP_000728289.1|830981_832865_+	MBL fold metallo-hydrolase	NA	Q332B9	Clostridium_botulinum_C_phage	22.1	4.0e-08
WP_010976490.1|832944_834075_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.9e-114
WP_000254686.1|834084_835347_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	2.5e-139
WP_000689711.1|835350_836148_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.6	2.7e-59
WP_000033364.1|836263_836902_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	68.1	1.3e-75
WP_000806712.1|836898_837789_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
WP_000358228.1|837828_838146_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_001166880.1|838148_839018_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	76.1	2.7e-116
WP_001261452.1|839244_839763_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_001819936.1|839871_840519_+	replication initiator protein A	NA	A0A2P0VK56	Streptococcus_phage	33.7	7.0e-13
>prophage 5
NZ_CP038808	Streptococcus pneumoniae strain R6CIB17 chromosome, complete genome	2038617	1300764	1306542	2038617		Streptococcus_phage(50.0%)	9	NA	NA
WP_001272961.1|1300764_1301376_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000855753.1|1301420_1302149_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000272302.1|1302187_1303099_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.8	4.5e-90
WP_001206968.1|1303164_1303401_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590970.1|1303466_1304210_-	amino acid ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.4	1.6e-13
WP_001103449.1|1304209_1305010_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000889093.1|1305167_1305524_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001170347.1|1305517_1306048_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
WP_000405853.1|1306047_1306542_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	51.5	5.5e-42
>prophage 6
NZ_CP038808	Streptococcus pneumoniae strain R6CIB17 chromosome, complete genome	2038617	1406615	1413369	2038617	protease	Streptococcus_phage(50.0%)	9	NA	NA
WP_000080996.1|1406615_1407584_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	99.2	1.1e-65
WP_000011306.1|1407617_1408529_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.7	1.5e-154
WP_001231087.1|1408525_1409503_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	99.7	4.4e-184
WP_000163025.1|1409499_1410390_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	6.7e-06
WP_001140412.1|1410441_1410822_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422599.1|1410832_1411420_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000106346.1|1411428_1412661_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
WP_000442275.1|1412692_1412863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000162439.1|1412862_1413369_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	43.8	1.0e-27
>prophage 7
NZ_CP038808	Streptococcus pneumoniae strain R6CIB17 chromosome, complete genome	2038617	1654915	1662247	2038617		uncultured_Mediterranean_phage(33.33%)	10	NA	NA
WP_000167846.1|1654915_1655617_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	35.7	4.6e-34
WP_001108391.1|1655632_1655743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001844979.1|1656024_1656999_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	1.8e-57
WP_001193676.1|1656988_1657945_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764310.1|1657941_1658694_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.2	3.7e-13
WP_000858246.1|1658789_1659755_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000821615.1|1659979_1660222_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	7.8e-18
WP_001222228.1|1660221_1660944_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|1660930_1661500_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351907.1|1661518_1662247_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
>prophage 8
NZ_CP038808	Streptococcus pneumoniae strain R6CIB17 chromosome, complete genome	2038617	2016274	2025028	2038617		Streptococcus_phage(33.33%)	9	NA	NA
WP_000510406.1|2016274_2017114_-	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	8.2e-14
WP_000835715.1|2017098_2017926_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
WP_000712132.1|2017922_2018468_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001844398.1|2018478_2019309_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000170194.1|2019341_2020625_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	1.1e-17
WP_000424263.1|2020621_2021872_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	3.5e-93
WP_000455903.1|2022030_2022399_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
WP_000266662.1|2022401_2023499_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000073428.1|2023549_2025028_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
