assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008253725.1_ASM825372v1	NZ_CP038808	Streptococcus pneumoniae strain R6CIB17 chromosome, complete genome	1	96673-96768	1	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG,RT	Orphan	AATGTGTAAGATTTTTATATATAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,RT	NA|62aa|up_7|NZ_CP038808.1_89746_89932_-,NA|87aa|down_3|NZ_CP038808.1_101152_101413_-	NA|310aa|up_9|NZ_CP038808.1_87806_88736_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|308aa|up_8|NZ_CP038808.1_88749_89673_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|62aa|up_7|NZ_CP038808.1_89746_89932_-	NA	NA|492aa|up_6|NZ_CP038808.1_89930_91406_+	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|329aa|up_5|NZ_CP038808.1_91677_92664_+	PRK00142, PRK00142, rhodanese-related sulfurtransferase	NA|338aa|up_4|NZ_CP038808.1_92632_93646_+	pfam14132, DUF4299, Domain of unknown function (DUF4299)	NA|355aa|up_3|NZ_CP038808.1_93717_94782_-	pfam10310, DUF5427, Family of unknown function (DUF5427)	NA|304aa|up_2|NZ_CP038808.1_94844_95756_-	pfam13349, DUF4097, Putative adhesin	NA|198aa|up_1|NZ_CP038808.1_95748_96342_-	COG4709, COG4709, Predicted membrane protein [Function unknown]	NA|109aa|up_0|NZ_CP038808.1_96328_96655_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|389aa|down_0|NZ_CP038808.1_96793_97960_-	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters	NA|386aa|down_1|NZ_CP038808.1_98017_99175_+	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan	NA|617aa|down_2|NZ_CP038808.1_99216_101067_+	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|87aa|down_3|NZ_CP038808.1_101152_101413_-	NA	NA|211aa|down_4|NZ_CP038808.1_101462_102095_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|291aa|down_5|NZ_CP038808.1_102116_102989_-	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|224aa|down_6|NZ_CP038808.1_102997_103669_-	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|168aa|down_7|NZ_CP038808.1_103910_104414_+	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|83aa|down_8|NZ_CP038808.1_105241_105490_+	pfam09683, Lactococcin_972, Bacteriocin (Lactococcin_972)	NA|703aa|down_9|NZ_CP038808.1_105544_107653_+	TIGR01654, unnamed_protein_product, bacteriocin-associated integral membrane (putative immunity) protein
GCF_008253725.1_ASM825372v1	NZ_CP038808	Streptococcus pneumoniae strain R6CIB17 chromosome, complete genome	2	1380487-1380608	2	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG,RT	Orphan	ACTTCTGGTGTCGGTACATTTGGTGTTGG	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,RT	NA|65aa|up_1|NZ_CP038808.1_1379195_1379390_+,NA|532aa|down_3|NZ_CP038808.1_1390810_1392406_-	NA|467aa|up_9|NZ_CP038808.1_1372876_1374277_-	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|80aa|up_8|NZ_CP038808.1_1374571_1374811_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|157aa|up_7|NZ_CP038808.1_1374842_1375313_-	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|97aa|up_6|NZ_CP038808.1_1375324_1375615_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|448aa|up_5|NZ_CP038808.1_1375767_1377111_-	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	NA|122aa|up_4|NZ_CP038808.1_1377129_1377495_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|396aa|up_3|NZ_CP038808.1_1377487_1378675_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|144aa|up_2|NZ_CP038808.1_1378671_1379103_-	COG5353, COG5353, Uncharacterized protein conserved in bacteria [Function unknown]	NA|65aa|up_1|NZ_CP038808.1_1379195_1379390_+	NA	NA|183aa|up_0|NZ_CP038808.1_1379480_1380029_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|503aa|down_0|NZ_CP038808.1_1388113_1389622_+	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|243aa|down_1|NZ_CP038808.1_1389672_1390401_-	PRK02101, PRK02101, peroxide stress protein YaaA	NA|60aa|down_2|NZ_CP038808.1_1390479_1390659_-	pfam13129, DUF3953, Protein of unknown function (DUF3953)	NA|532aa|down_3|NZ_CP038808.1_1390810_1392406_-	NA	NA|137aa|down_4|NZ_CP038808.1_1392417_1392828_-	PRK09218, PRK09218, peptide deformylase; Validated	NA|264aa|down_5|NZ_CP038808.1_1392943_1393735_-	PRK11752, PRK11752, putative S-transferase; Provisional	NA|899aa|down_6|NZ_CP038808.1_1393747_1396444_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|395aa|down_7|NZ_CP038808.1_1396747_1397932_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|624aa|down_8|NZ_CP038808.1_1398074_1399946_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|400aa|down_9|NZ_CP038808.1_1399942_1401142_-	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional
GCF_008253725.1_ASM825372v1	NZ_CP038808	Streptococcus pneumoniae strain R6CIB17 chromosome, complete genome	3	1690539-1690656	3	CRISPRCasFinder	no		cas3,DEDDh,PrimPol,DinG,RT	Orphan	CAAAAAAGAAAGGACAAAATTTGTCCTTTCTCGAGCTTAGCTTTT	45	1	3	1690584-1690611|1690584-1690611|1690584-1690611	NZ_CP038808.1_1648881-1648908|NZ_CP038808.1_40218-40191|NZ_CP038808.1_990695-990668	NA	1	1	Orphan	cas3,DEDDh,PrimPol,DinG,RT	NA|88aa|up_8|NZ_CP038808.1_1679006_1679270_+,NA	NA|660aa|up_9|NZ_CP038808.1_1676995_1678975_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|88aa|up_8|NZ_CP038808.1_1679006_1679270_+	NA	NA|398aa|up_7|NZ_CP038808.1_1679661_1680855_-	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]	NA|481aa|up_6|NZ_CP038808.1_1680992_1682435_-	TIGR03852, sucrose_gtfA, sucrose phosphorylase	NA|278aa|up_5|NZ_CP038808.1_1682792_1683626_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|297aa|up_4|NZ_CP038808.1_1683639_1684530_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|420aa|up_3|NZ_CP038808.1_1684519_1685779_-	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|721aa|up_2|NZ_CP038808.1_1685870_1688033_-	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism]	NA|287aa|up_1|NZ_CP038808.1_1688140_1689001_+	cd06986, cupin_MmsR-like_N, AraC/XylS family transcriptional regulators similar to MmsR, N-terminal cupin domain	NA|312aa|up_0|NZ_CP038808.1_1688997_1689933_+	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|452aa|down_0|NZ_CP038808.1_1697565_1698921_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|259aa|down_1|NZ_CP038808.1_1698958_1699735_+	PRK14135, recX, recombination regulator RecX; Provisional	NA|178aa|down_2|NZ_CP038808.1_1699823_1700357_+	PRK13662, PRK13662, hypothetical protein; Provisional	NA|69aa|down_3|NZ_CP038808.1_1700710_1700917_-	TIGR01716, HTH-type_transcriptional_regulator_rgg, transcriptional activator, Rgg/GadR/MutR family, C-terminal domain	NA|410aa|down_4|NZ_CP038808.1_1701076_1702306_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|541aa|down_5|NZ_CP038808.1_1702404_1704027_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_6|NZ_CP038808.1_1704042_1704327_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|132aa|down_7|NZ_CP038808.1_1704482_1704878_-	PRK07274, PRK07274, single-stranded DNA-binding protein; Provisional	NA|254aa|down_8|NZ_CP038808.1_1704955_1705717_-	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|209aa|down_9|NZ_CP038808.1_1705749_1706376_-	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain
