The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP031062	Bacillus sp. AR4-2 chromosome, complete genome	5241257	256675	264624	5241257		uncultured_virus(33.33%)	6	NA	NA
WP_000917311.1|256675_256960_+	co-chaperone GroES	NA	A0A221S3C8	uncultured_virus	54.8	1.2e-20
WP_001029993.1|256998_258633_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	58.0	1.5e-157
WP_000743905.1|259040_260579_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	31.7	8.8e-22
WP_000833096.1|260963_262289_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	29.4	4.1e-44
WP_000929885.1|262433_263135_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.9	7.3e-40
WP_000719205.1|263118_264624_+	aminopeptidase AmpS	NA	W8CYF6	Bacillus_phage	30.3	5.4e-32
>prophage 2
NZ_CP031062	Bacillus sp. AR4-2 chromosome, complete genome	5241257	310200	318576	5241257		Synechococcus_phage(50.0%)	8	NA	NA
WP_000625682.1|310200_311508_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	25.3	4.9e-21
WP_001170544.1|311596_312316_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	44.3	4.0e-49
WP_000278823.1|312308_312563_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666786.1|312559_313243_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000055564.1|313226_315446_+	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	41.2	2.0e-163
WP_000879025.1|315430_316846_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.4	3.3e-55
WP_001262439.1|316951_317992_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F760	Synechococcus_phage	45.9	1.2e-67
WP_000088589.1|317988_318576_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	9.1e-28
>prophage 3
NZ_CP031062	Bacillus sp. AR4-2 chromosome, complete genome	5241257	648683	656680	5241257		Bacillus_phage(66.67%)	8	NA	NA
WP_116269190.1|648683_649652_-	YafY family transcriptional regulator	NA	A0A1B0RXM1	Streptococcus_phage	29.9	1.4e-17
WP_000085783.1|649731_650253_+	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_006918010.1|650266_651658_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	29.2	1.1e-31
WP_006918011.1|651669_652347_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.6	1.1e-32
WP_149149323.1|652522_653770_+	cell wall-binding repeat-containing protein	NA	NA	NA	NA	NA
WP_000277058.1|653903_654434_+	DUF4352 domain-containing protein	NA	A0A0S2MVG4	Bacillus_phage	33.7	3.6e-15
WP_000831286.1|654446_654791_+	DUF4064 domain-containing protein	NA	A0A0S2MVJ2	Bacillus_phage	78.1	8.5e-42
WP_000487920.1|655228_656680_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	54.2	4.4e-140
>prophage 4
NZ_CP031062	Bacillus sp. AR4-2 chromosome, complete genome	5241257	1798277	1806383	5241257		Bacillus_phage(66.67%)	7	NA	NA
WP_000755496.1|1798277_1799576_+	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	31.5	3.5e-11
WP_001194309.1|1799675_1800440_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_049107614.1|1800680_1802441_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	98.2	3.1e-273
WP_000612414.1|1802526_1803204_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	99.1	1.1e-122
WP_049107615.1|1803200_1804274_+	HAMP domain-containing sensor histidine kinase	NA	W8CYF6	Bacillus_phage	98.3	1.6e-187
WP_000818985.1|1804501_1805221_+	3-ketoacyl-ACP reductase	NA	W8CYX9	Bacillus_phage	100.0	5.9e-61
WP_001258539.1|1805510_1806383_+	aminoglycoside 6-adenylyltransferase	NA	E4ZFP8	Streptococcus_phage	44.4	2.8e-65
>prophage 5
NZ_CP031062	Bacillus sp. AR4-2 chromosome, complete genome	5241257	2428267	2470840	5241257	head,terminase,integrase,bacteriocin,portal,tail,capsid,protease,holin	Bacillus_phage(60.53%)	54	2423556:2423571	2457761:2457776
2423556:2423571	attL	GCTTTAAAAGATGTAA	NA	NA	NA	NA
WP_001071364.1|2428267_2428588_+|bacteriocin	heterocycloanthracin/sonorensin family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_002024190.1|2429077_2429563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000736205.1|2429875_2430577_+	DUF3962 domain-containing protein	NA	NA	NA	NA	NA
WP_000675852.1|2430615_2431725_-|integrase	site-specific integrase	integrase	A0A0U3U8Y8	Bacillus_phage	79.7	5.7e-148
WP_149149632.1|2432388_2433597_+	hypothetical protein	NA	D2XQ10	Bacillus_virus	44.7	4.7e-79
WP_102956497.1|2434039_2434390_-	helix-turn-helix transcriptional regulator	NA	A0A288WFW4	Bacillus_phage	39.7	3.3e-17
WP_149149633.1|2434572_2434869_+	helix-turn-helix domain-containing protein	NA	A0A288WG89	Bacillus_phage	46.5	1.8e-08
WP_102956499.1|2434831_2435044_+	hypothetical protein	NA	A0A288WFT2	Bacillus_phage	50.0	5.4e-07
WP_098520263.1|2435084_2435351_+	helix-turn-helix domain-containing protein	NA	A0A0U3ULL9	Bacillus_phage	90.6	1.2e-35
WP_149149634.1|2435725_2436442_+	DnaD domain protein	NA	A0A1B0T6C0	Bacillus_phage	80.7	2.1e-79
WP_149149635.1|2436380_2437256_+	ATP-binding protein	NA	Q2I8C8	Bacillus_phage	44.5	4.2e-61
WP_016124626.1|2437271_2437466_+	hypothetical protein	NA	A0A1B1P7U7	Bacillus_phage	89.1	4.3e-27
WP_000805174.1|2437491_2437665_+	DUF3954 domain-containing protein	NA	A0A1B1P7U5	Bacillus_phage	100.0	1.2e-25
WP_149149636.1|2437679_2437934_+	hypothetical protein	NA	A0A0U3SU43	Bacillus_phage	82.1	1.7e-34
WP_149149637.1|2437942_2438407_+	nucleoside permease	NA	A0A2H4J8I5	uncultured_Caudovirales_phage	35.4	4.4e-17
WP_149150116.1|2438602_2438887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_098398431.1|2438777_2439443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149149638.1|2439571_2440102_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_149149639.1|2440345_2440972_-	exosporium leader peptide-containing protein	NA	NA	NA	NA	NA
WP_086385656.1|2441092_2441365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149149640.1|2441511_2441964_-	epimerase	NA	NA	NA	NA	NA
WP_149150117.1|2442129_2442834_+	site-specific DNA-methyltransferase	NA	M4M8X6	Vibrio_phage	61.3	3.1e-75
WP_149149641.1|2443350_2443647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149149642.1|2444075_2444558_+	ArpU family transcriptional regulator	NA	H0USV3	Bacillus_phage	81.9	4.6e-70
WP_149149643.1|2444557_2445100_+|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	88.9	1.0e-86
WP_149149644.1|2445305_2446145_+	DUF2935 domain-containing protein	NA	A0A167RKB4	Powai_lake_megavirus	25.7	1.5e-07
WP_149149645.1|2446515_2446938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065845245.1|2447391_2447943_+	hypothetical protein	NA	A0A288WFY4	Bacillus_phage	41.5	2.0e-32
WP_080478490.1|2448023_2448329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065845247.1|2448600_2449080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065845248.1|2449136_2449328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065845249.1|2449328_2449586_+	hydrolase	NA	NA	NA	NA	NA
WP_065845250.1|2449578_2449914_+	HNH endonuclease	NA	D2XR61	Bacillus_phage	88.3	3.4e-51
WP_000763336.1|2450068_2450425_+	hypothetical protein	NA	A0A2H4JBV9	uncultured_Caudovirales_phage	100.0	3.6e-59
WP_149149646.1|2450421_2452077_+|terminase	terminase large subunit	terminase	A0A2H4JI41	uncultured_Caudovirales_phage	95.1	8.7e-310
WP_149150118.1|2452103_2453249_+|portal	phage portal protein	portal	A0A2H4JAJ1	uncultured_Caudovirales_phage	85.2	7.9e-185
WP_149149647.1|2453232_2454009_+|protease	Clp protease ClpP	protease	A0A0A7RWX3	Clostridium_phage	55.8	1.1e-55
WP_149149648.1|2454029_2455184_+|capsid	phage major capsid protein	capsid	A0A2H4JH29	uncultured_Caudovirales_phage	85.1	1.6e-185
WP_149149649.1|2455189_2455483_+	hypothetical protein	NA	D2XR19	Bacillus_phage	91.8	5.9e-44
WP_149149650.1|2455484_2455838_+|head	phage head closure protein	head	A0A2H4JGG7	uncultured_Caudovirales_phage	95.7	5.1e-58
WP_149149651.1|2455839_2456184_+	HK97 gp10 family phage protein	NA	D2XR21	Bacillus_phage	92.0	3.4e-51
WP_149149652.1|2456180_2456510_+	hypothetical protein	NA	D2XR22	Bacillus_phage	94.5	1.3e-52
WP_001004911.1|2456510_2457098_+|tail	phage tail protein	tail	A0A2H4JDV4	uncultured_Caudovirales_phage	82.6	3.0e-87
WP_149149653.1|2457104_2457467_+	hypothetical protein	NA	A0A2H4JAG8	uncultured_Caudovirales_phage	80.8	4.7e-51
WP_140335780.1|2457463_2457682_+	hypothetical protein	NA	A0A2H4JHE4	uncultured_Caudovirales_phage	92.5	2.8e-22
WP_149149654.1|2457697_2458909_+	hypothetical protein	NA	A0A2H4JAI2	uncultured_Caudovirales_phage	86.6	7.3e-189
2457761:2457776	attR	GCTTTAAAAGATGTAA	NA	NA	NA	NA
WP_149149655.1|2459162_2459423_+	hypothetical protein	NA	A0A1B1P763	Bacillus_phage	85.9	1.3e-34
WP_149149656.1|2459637_2461806_+|tail	phage tail tape measure protein	tail	A0A2H4JC82	uncultured_Caudovirales_phage	83.5	2.3e-84
WP_149149657.1|2461847_2463305_+|tail	phage tail family protein	tail	A0A0A7AQV1	Bacillus_phage	59.5	1.3e-171
WP_149149658.1|2463301_2467621_+	hypothetical protein	NA	A0A0S2MVB4	Bacillus_phage	59.1	0.0e+00
WP_149149659.1|2467632_2468013_+	hypothetical protein	NA	A0A0S2MVE0	Bacillus_phage	74.2	5.3e-45
WP_149149660.1|2468131_2469517_+	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA	NA
WP_065703361.1|2469605_2470031_+|holin	phage holin family protein	holin	A0A1B1P787	Bacillus_phage	96.5	1.4e-70
WP_149149661.1|2470030_2470840_+	N-acetylmuramoyl-L-alanine amidase	NA	D2XR33	Bacillus_phage	92.2	4.8e-152
>prophage 6
NZ_CP031062	Bacillus sp. AR4-2 chromosome, complete genome	5241257	3512963	3523136	5241257	bacteriocin	Bacillus_phage(54.55%)	14	NA	NA
WP_000413738.1|3512963_3513584_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.2	8.2e-19
WP_048536031.1|3513674_3514478_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_000031383.1|3514478_3515021_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_001102628.1|3515013_3515337_-	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000392444.1|3515708_3515939_-|bacteriocin	bacteriocin biosynthesis protein	bacteriocin	A0A1B1P7Q9	Bacillus_phage	73.7	1.5e-23
WP_016123244.1|3516000_3516897_-	hypothetical protein	NA	A0A0S2MVR5	Bacillus_phage	52.1	4.6e-79
WP_006920050.1|3517169_3518012_-	M23 family metallopeptidase	NA	A0A218KCJ1	Bacillus_phage	47.7	6.1e-33
WP_033692154.1|3518130_3519117_-	lysozyme family protein	NA	A0A223LKM8	Bacillus_phage	43.9	1.7e-34
WP_000464425.1|3519355_3519742_-	DUF1492 domain-containing protein	NA	A0A288WG73	Bacillus_phage	71.4	2.6e-47
WP_149149878.1|3519860_3520742_-	DnaD domain protein	NA	A0A2H4J394	uncultured_Caudovirales_phage	65.9	5.3e-96
WP_001189065.1|3520894_3521089_-	hypothetical protein	NA	A0A1C8E9A1	Bacillus_phage	71.0	1.7e-15
WP_086412708.1|3521100_3521859_-	phage regulatory protein	NA	A0A2H4JBC7	uncultured_Caudovirales_phage	69.0	2.0e-96
WP_000283431.1|3522061_3522274_-	hypothetical protein	NA	A6M975	Geobacillus_virus	63.0	1.6e-11
WP_006920059.1|3522464_3523136_+	helix-turn-helix domain-containing protein	NA	A0A2H4J441	uncultured_Caudovirales_phage	41.0	6.8e-35
>prophage 7
NZ_CP031062	Bacillus sp. AR4-2 chromosome, complete genome	5241257	4311075	4318762	5241257		Staphylococcus_phage(16.67%)	9	NA	NA
WP_017674010.1|4311075_4311999_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	44.0	4.0e-46
WP_016125943.1|4312125_4313061_-	HAMP domain-containing histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	25.9	4.3e-11
WP_149149936.1|4313062_4313755_-	response regulator	NA	B5LWA6	Feldmannia_species_virus	29.8	1.4e-06
WP_149149937.1|4314097_4314292_+	YwbE family protein	NA	NA	NA	NA	NA
WP_006916399.1|4314330_4315530_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	41.2	4.7e-71
WP_000587818.1|4315825_4316149_+	heme oxygenase	NA	NA	NA	NA	NA
WP_001086120.1|4316221_4316986_-	class B sortase	NA	NA	NA	NA	NA
WP_000403758.1|4317018_4317789_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.1	3.7e-13
WP_001036848.1|4317778_4318762_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.2	1.1e-17
