assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008274965.1_ASM827496v1	NZ_CP033318	Azospirillum brasilense strain Cd chromosome 1, complete sequence	1	1007620-1008121	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7b,cas4,cas1,cas2	DEDDh,WYL,cas3,cas5,cas8c,cas7b,cas4,cas1,cas2,csa3,DinG	Type I-C,Type I-U, Type I-U?	GTTTCAATCCACGCCCTCGCACGGAGGGCGAC,GTTTCAATCCACGCCCTCGCACGGAGGGCGAC,GTTTCAATCCACGCCCTCGCACGGAGGGCGAC	32,32,32	1	1	1007652-1007686	NZ_CP033320.1_125017-125051	I-C:I-C:I-C	7,7,7	7	TypeI-C,TypeI-U?,TypeI-U	DEDDh,WYL,cas3,cas5,cas8c,cas7b,cas4,cas1,cas2,csa3,DinG,RT	NA,NA	NA|93aa|up_9|NZ_CP033318.1_998399_998678_+	COG1669, COG1669, Predicted nucleotidyltransferases [General function prediction only]	NA|152aa|up_8|NZ_CP033318.1_998762_999218_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|70aa|up_7|NZ_CP033318.1_999310_999520_+	COG3360, COG3360, Uncharacterized conserved protein [Function unknown]	NA|409aa|up_6|NZ_CP033318.1_999580_1000807_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|193aa|up_5|NZ_CP033318.1_1000787_1001366_+	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|392aa|up_4|NZ_CP033318.1_1001356_1002532_-	NF033203, entero_EhxA, enterohemolysin EhxA	NA|563aa|up_3|NZ_CP033318.1_1002727_1004416_+	cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase	NA|229aa|up_2|NZ_CP033318.1_1004783_1005470_+	PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional	NA|250aa|up_1|NZ_CP033318.1_1005635_1006385_+	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	NA|321aa|up_0|NZ_CP033318.1_1006424_1007387_+	pfam00144, Beta-lactamase, Beta-lactamase	cas3|772aa|down_0|NZ_CP033318.1_1008911_1011227_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|236aa|down_1|NZ_CP033318.1_1011897_1012605_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|600aa|down_2|NZ_CP033318.1_1012601_1014401_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7b|323aa|down_3|NZ_CP033318.1_1014407_1015376_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|228aa|down_4|NZ_CP033318.1_1015389_1016073_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|348aa|down_5|NZ_CP033318.1_1016095_1017139_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|down_6|NZ_CP033318.1_1017145_1017436_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|223aa|down_7|NZ_CP033318.1_1019167_1019836_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|138aa|down_8|NZ_CP033318.1_1020019_1020433_+	COG0393, COG0393, Uncharacterized conserved protein [Function unknown]	NA|368aa|down_9|NZ_CP033318.1_1020499_1021603_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33
GCF_008274965.1_ASM827496v1	NZ_CP033318	Azospirillum brasilense strain Cd chromosome 1, complete sequence	2	1017607-1018710	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7b,cas4,cas1,cas2	DEDDh,WYL,cas3,cas5,cas8c,cas7b,cas4,cas1,cas2,csa3,DinG	Type I-C,Type I-U, Type I-U?	GTTTCAATCCACGCCCTCGCACAGAGGGCGAC,GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC,GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	15,15,16	16	TypeI-C,TypeI-U?,TypeI-U	DEDDh,WYL,cas3,cas5,cas8c,cas7b,cas4,cas1,cas2,csa3,DinG,RT	NA,NA|136aa|down_3|NZ_CP033318.1_1021682_1022090_+	NA|229aa|up_9|NZ_CP033318.1_1004783_1005470_+	PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional	NA|250aa|up_8|NZ_CP033318.1_1005635_1006385_+	cd13530, PBP2_peptides_like, Peptide-binding protein and related homologs; type 2 periplasmic binding protein fold	NA|321aa|up_7|NZ_CP033318.1_1006424_1007387_+	pfam00144, Beta-lactamase, Beta-lactamase	cas3|772aa|up_6|NZ_CP033318.1_1008911_1011227_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas5|236aa|up_5|NZ_CP033318.1_1011897_1012605_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|600aa|up_4|NZ_CP033318.1_1012601_1014401_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7b|323aa|up_3|NZ_CP033318.1_1014407_1015376_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|228aa|up_2|NZ_CP033318.1_1015389_1016073_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|348aa|up_1|NZ_CP033318.1_1016095_1017139_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NZ_CP033318.1_1017145_1017436_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|223aa|down_0|NZ_CP033318.1_1019167_1019836_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|138aa|down_1|NZ_CP033318.1_1020019_1020433_+	COG0393, COG0393, Uncharacterized conserved protein [Function unknown]	NA|368aa|down_2|NZ_CP033318.1_1020499_1021603_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|136aa|down_3|NZ_CP033318.1_1021682_1022090_+	NA	NA|244aa|down_4|NZ_CP033318.1_1022104_1022836_+	pfam13723, Ketoacyl-synt_2, Beta-ketoacyl synthase, N-terminal domain	NA|261aa|down_5|NZ_CP033318.1_1022825_1023608_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|87aa|down_6|NZ_CP033318.1_1023594_1023855_+	PRK09184, PRK09184, acyl carrier protein; Provisional	NA|83aa|down_7|NZ_CP033318.1_1023860_1024109_+	PRK05350, PRK05350, acyl carrier protein; Provisional	NA|194aa|down_8|NZ_CP033318.1_1024089_1024671_+	COG4648, COG4648, Predicted membrane protein [Function unknown]	NA|564aa|down_9|NZ_CP033318.1_1024667_1026359_+	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
GCF_008274965.1_ASM827496v1	NZ_CP033320	Azospirillum brasilense strain Cd chromosome 3, complete sequence	1	279408-279749	1	CRT	no		csa3	Orphan	ATGGAGCNNNAGCCCGCGC	19	0	0	NA	NA	NA	5	5	Orphan	DEDDh,WYL,cas3,cas5,cas8c,cas7b,cas4,cas1,cas2,csa3,DinG,RT	NA|229aa|up_0|NZ_CP033320.1_277717_278404_-,NA|406aa|down_0|NZ_CP033320.1_280057_281275_+	NA|253aa|up_9|NZ_CP033320.1_265517_266276_+	cd13541, PBP2_ModA_like_2, Substrate binding domain of molybdate-binding proteins;the type 2 periplasmic binding protein fold	NA|249aa|up_8|NZ_CP033320.1_267168_267915_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|355aa|up_7|NZ_CP033320.1_268004_269069_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|394aa|up_6|NZ_CP033320.1_269065_270247_+	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase	NA|394aa|up_5|NZ_CP033320.1_270243_271425_+	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|834aa|up_4|NZ_CP033320.1_271427_273929_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|176aa|up_3|NZ_CP033320.1_273925_274453_+	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|714aa|up_2|NZ_CP033320.1_274497_276639_+	cd07302, CHD, cyclase homology domain	NA|347aa|up_1|NZ_CP033320.1_276654_277695_+	cd13677, PBP2_TRAP_SBP_like_6, Uncharacterized substrate-binding protein of the Tripartite ATP-independent  Periplasmic transporter family; the type 2 periplasmic-binding protein fold	NA|229aa|up_0|NZ_CP033320.1_277717_278404_-	NA	NA|406aa|down_0|NZ_CP033320.1_280057_281275_+	NA	NA|152aa|down_1|NZ_CP033320.1_281294_281750_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|140aa|down_2|NZ_CP033320.1_281878_282298_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|227aa|down_3|NZ_CP033320.1_282480_283161_-	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown]	NA|356aa|down_4|NZ_CP033320.1_283944_285012_+	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	NA|1107aa|down_5|NZ_CP033320.1_285025_288346_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|297aa|down_6|NZ_CP033320.1_288370_289261_-	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|313aa|down_7|NZ_CP033320.1_289323_290262_-	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|399aa|down_8|NZ_CP033320.1_290264_291461_-	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]	NA|680aa|down_9|NZ_CP033320.1_292092_294132_+	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP)
GCF_008274965.1_ASM827496v1	NZ_CP033320	Azospirillum brasilense strain Cd chromosome 3, complete sequence	2	491063-491264	1	PILER-CR	no		csa3	Orphan	GAGACGCTGACCGGCGGCATCGGCACCGACGTGGTGACGCTGGGCT	46	0	0	NA	NA	NA	2	2	Orphan	DEDDh,WYL,cas3,cas5,cas8c,cas7b,cas4,cas1,cas2,csa3,DinG,RT	NA|128aa|up_8|NZ_CP033320.1_476228_476612_+,NA|354aa|up_0|NZ_CP033320.1_487540_488602_+,NA|113aa|down_2|NZ_CP033320.1_503744_504083_+	NA|478aa|up_9|NZ_CP033320.1_474650_476084_+	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only]	NA|128aa|up_8|NZ_CP033320.1_476228_476612_+	NA	NA|639aa|up_7|NZ_CP033320.1_477083_479000_+	PRK09102, PRK09102, ribonucleoside-diphosphate reductase subunit alpha	NA|364aa|up_6|NZ_CP033320.1_479037_480129_+	PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|394aa|up_5|NZ_CP033320.1_480316_481498_+	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|879aa|up_4|NZ_CP033320.1_481507_484144_+	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent	NA|402aa|up_3|NZ_CP033320.1_484143_485349_+	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF	NA|287aa|up_2|NZ_CP033320.1_485380_486241_+	cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage	NA|325aa|up_1|NZ_CP033320.1_486608_487583_+	pfam17936, Big_6, Bacterial Ig domain	NA|354aa|up_0|NZ_CP033320.1_487540_488602_+	NA	NA|278aa|down_0|NZ_CP033320.1_502395_503229_+	COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]	NA|27aa|down_1|NZ_CP033320.1_503373_503454_-	TIGR02107, Coenzyme_PQQ_synthesis_protein_A, coenzyme PQQ precursor peptide PqqA	NA|113aa|down_2|NZ_CP033320.1_503744_504083_+	NA	NA|277aa|down_3|NZ_CP033320.1_504107_504938_-	TIGR04557, hypothetical_protein, quinoprotein dehydrogenase-associated SoxYZ-like carrier	NA|324aa|down_4|NZ_CP033320.1_504942_505914_-	TIGR04559, metallo-beta-lactamase_family_protein, quinoprotein relay system zinc metallohydrolase 2	NA|366aa|down_5|NZ_CP033320.1_505919_507017_-	TIGR03123, one_C_unchar_1, probable H4MPT-linked C1 transfer pathway protein	NA|333aa|down_6|NZ_CP033320.1_507020_508019_-	COG1821, COG1821, Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]	NA|236aa|down_7|NZ_CP033320.1_508053_508761_+	cd04723, HisA_HisF, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)	NA|174aa|down_8|NZ_CP033320.1_508766_509288_-	pfam08714, Fae, Formaldehyde-activating enzyme (Fae)	NA|293aa|down_9|NZ_CP033320.1_509355_510234_-	pfam01874, CitG, ATP:dephospho-CoA triphosphoribosyl transferase
GCF_008274965.1_ASM827496v1	NZ_CP033320	Azospirillum brasilense strain Cd chromosome 3, complete sequence	3	492668-492856	2	PILER-CR	no		csa3	Orphan	GTGACGCTG---GGCAGCGCCGGCAACACGCTGCTG	36	0	0	NA	NA	NA	2	2	Orphan	DEDDh,WYL,cas3,cas5,cas8c,cas7b,cas4,cas1,cas2,csa3,DinG,RT	NA|128aa|up_8|NZ_CP033320.1_476228_476612_+,NA|354aa|up_0|NZ_CP033320.1_487540_488602_+,NA|113aa|down_2|NZ_CP033320.1_503744_504083_+	NA|478aa|up_9|NZ_CP033320.1_474650_476084_+	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only]	NA|128aa|up_8|NZ_CP033320.1_476228_476612_+	NA	NA|639aa|up_7|NZ_CP033320.1_477083_479000_+	PRK09102, PRK09102, ribonucleoside-diphosphate reductase subunit alpha	NA|364aa|up_6|NZ_CP033320.1_479037_480129_+	PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|394aa|up_5|NZ_CP033320.1_480316_481498_+	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|879aa|up_4|NZ_CP033320.1_481507_484144_+	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent	NA|402aa|up_3|NZ_CP033320.1_484143_485349_+	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF	NA|287aa|up_2|NZ_CP033320.1_485380_486241_+	cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage	NA|325aa|up_1|NZ_CP033320.1_486608_487583_+	pfam17936, Big_6, Bacterial Ig domain	NA|354aa|up_0|NZ_CP033320.1_487540_488602_+	NA	NA|278aa|down_0|NZ_CP033320.1_502395_503229_+	COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]	NA|27aa|down_1|NZ_CP033320.1_503373_503454_-	TIGR02107, Coenzyme_PQQ_synthesis_protein_A, coenzyme PQQ precursor peptide PqqA	NA|113aa|down_2|NZ_CP033320.1_503744_504083_+	NA	NA|277aa|down_3|NZ_CP033320.1_504107_504938_-	TIGR04557, hypothetical_protein, quinoprotein dehydrogenase-associated SoxYZ-like carrier	NA|324aa|down_4|NZ_CP033320.1_504942_505914_-	TIGR04559, metallo-beta-lactamase_family_protein, quinoprotein relay system zinc metallohydrolase 2	NA|366aa|down_5|NZ_CP033320.1_505919_507017_-	TIGR03123, one_C_unchar_1, probable H4MPT-linked C1 transfer pathway protein	NA|333aa|down_6|NZ_CP033320.1_507020_508019_-	COG1821, COG1821, Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]	NA|236aa|down_7|NZ_CP033320.1_508053_508761_+	cd04723, HisA_HisF, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)	NA|174aa|down_8|NZ_CP033320.1_508766_509288_-	pfam08714, Fae, Formaldehyde-activating enzyme (Fae)	NA|293aa|down_9|NZ_CP033320.1_509355_510234_-	pfam01874, CitG, ATP:dephospho-CoA triphosphoribosyl transferase
