assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008327825.1_ASM832782v1	NZ_AP019827	Leptotrichia shahii strain JCM16776	1	128676-129048	1	CRT	no	cas14k,cas13a,cas1,cas2	csa3,cas14j,cas14k,cas13a,cas1,cas2,DEDDh,cas3,csx1,csx20,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas5,cas7,cas8b2,cas6,WYL,DinG	Type VI-A	GATATAGACCACCCCAATATCGAAGGGGACTAAAAC	36	0	0	NA	NA	NA	5	5	TypeV,TypeVI-A	csa3,cas14j,cas14k,cas13a,cas1,cas2,DEDDh,cas3,csx1,csx20,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas5,cas7,cas8b2,cas6,WYL,DinG	cas13a|1390aa|up_2|NZ_AP019827.1_123115_127285_+,NA|195aa|down_2|NZ_AP019827.1_132324_132909_+,NA|182aa|down_9|NZ_AP019827.1_138264_138810_+	NA|91aa|up_9|NZ_AP019827.1_111802_112075_+	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	cas14k|416aa|up_8|NZ_AP019827.1_112688_113936_+	pfam01385, OrfB_IS605, Probable transposase	NA|206aa|up_7|NZ_AP019827.1_113965_114583_+	PRK00443, nagB, glucosamine-6-phosphate deaminase; Provisional	NA|383aa|up_6|NZ_AP019827.1_114945_116094_+	PRK11170, nagA, N-acetylglucosamine-6-phosphate deacetylase; Provisional	NA|452aa|up_5|NZ_AP019827.1_116620_117976_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|458aa|up_4|NZ_AP019827.1_118496_119870_+	PRK02256, PRK02256, putative aminopeptidase 1; Provisional	NA|1018aa|up_3|NZ_AP019827.1_119900_122954_+	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	cas13a|1390aa|up_2|NZ_AP019827.1_123115_127285_+	NA	cas1|305aa|up_1|NZ_AP019827.1_127314_128229_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|106aa|up_0|NZ_AP019827.1_128218_128536_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|637aa|down_0|NZ_AP019827.1_129266_131177_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|256aa|down_1|NZ_AP019827.1_131463_132231_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|195aa|down_2|NZ_AP019827.1_132324_132909_+	NA	NA|129aa|down_3|NZ_AP019827.1_132934_133321_+	cd11530, NTP-PPase_DR2231_like, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|86aa|down_4|NZ_AP019827.1_133537_133795_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|196aa|down_5|NZ_AP019827.1_134283_134871_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|401aa|down_6|NZ_AP019827.1_135062_136265_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|89aa|down_7|NZ_AP019827.1_136514_136781_+	pfam02699, YajC, Preprotein translocase subunit	NA|376aa|down_8|NZ_AP019827.1_137106_138234_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|182aa|down_9|NZ_AP019827.1_138264_138810_+	NA
GCF_008327825.1_ASM832782v1	NZ_AP019827	Leptotrichia shahii strain JCM16776	2	184082-184263	1	PILER-CR	no		csa3,cas14j,cas14k,cas13a,cas1,cas2,DEDDh,cas3,csx1,csx20,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas5,cas7,cas8b2,cas6,WYL,DinG	Orphan	GTTAAAGTAGAGTATCCATTAAAATAAGGATTGAAACGA	39	0	0	NA	NA	I-B	2	2	Orphan	csa3,cas14j,cas14k,cas13a,cas1,cas2,DEDDh,cas3,csx1,csx20,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas5,cas7,cas8b2,cas6,WYL,DinG	NA|104aa|up_0|NZ_AP019827.1_183464_183776_+,NA|294aa|down_1|NZ_AP019827.1_185691_186573_+,NA|387aa|down_2|NZ_AP019827.1_186661_187822_+,NA|87aa|down_7|NZ_AP019827.1_190919_191180_-	NA|60aa|up_9|NZ_AP019827.1_173514_173694_+	PRK05611, rpmD, 50S ribosomal protein L30; Reviewed	NA|205aa|up_8|NZ_AP019827.1_173699_174314_+	PRK05592, rplO, 50S ribosomal protein L15; Reviewed	NA|436aa|up_7|NZ_AP019827.1_174360_175668_+	PRK09204, secY, preprotein translocase subunit SecY; Reviewed	NA|292aa|up_6|NZ_AP019827.1_176203_177079_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|265aa|up_5|NZ_AP019827.1_177084_177879_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|250aa|up_4|NZ_AP019827.1_177890_178640_-	TIGR02315, Phosphonates_import_ATP-binding_protein_PhnC, phosphonate ABC transporter, ATP-binding protein	NA|515aa|up_3|NZ_AP019827.1_178736_180281_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|295aa|up_2|NZ_AP019827.1_180308_181193_-	pfam13145, Rotamase_2, PPIC-type PPIASE domain	NA|610aa|up_1|NZ_AP019827.1_181585_183415_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|104aa|up_0|NZ_AP019827.1_183464_183776_+	NA	NA|255aa|down_0|NZ_AP019827.1_184541_185306_+	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|294aa|down_1|NZ_AP019827.1_185691_186573_+	NA	NA|387aa|down_2|NZ_AP019827.1_186661_187822_+	NA	NA|122aa|down_3|NZ_AP019827.1_188047_188413_+	pfam07007, LprI, Lysozyme inhibitor LprI	NA|126aa|down_4|NZ_AP019827.1_188541_188919_-	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|258aa|down_5|NZ_AP019827.1_188967_189741_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|210aa|down_6|NZ_AP019827.1_190014_190644_-	PRK00279, adk, adenylate kinase; Reviewed	NA|87aa|down_7|NZ_AP019827.1_190919_191180_-	NA	NA|597aa|down_8|NZ_AP019827.1_191406_193197_+	TIGR01530, Probable_5'-nucleotidase, NAD pyrophosphatase/5'-nucleotidase NadN	NA|133aa|down_9|NZ_AP019827.1_193325_193724_+	cd11536, NTP-PPase_iMazG, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3
GCF_008327825.1_ASM832782v1	NZ_AP019827	Leptotrichia shahii strain JCM16776	3	994413-994977	1,2	CRISPRCasFinder,CRT	no		csa3,cas14j,cas14k,cas13a,cas1,cas2,DEDDh,cas3,csx1,csx20,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas5,cas7,cas8b2,cas6,WYL,DinG	Orphan	GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC,GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	37,37	0	0	NA	NA	I-B:I-B	7,7	7	Orphan	csa3,cas14j,cas14k,cas13a,cas1,cas2,DEDDh,cas3,csx1,csx20,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas5,cas7,cas8b2,cas6,WYL,DinG	NA|225aa|up_2|NZ_AP019827.1_992218_992893_+,NA|55aa|up_0|NZ_AP019827.1_993918_994083_+,NA|180aa|down_9|NZ_AP019827.1_1009190_1009730_-	NA|246aa|up_9|NZ_AP019827.1_984921_985659_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|243aa|up_8|NZ_AP019827.1_985723_986452_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|253aa|up_7|NZ_AP019827.1_986607_987366_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|248aa|up_6|NZ_AP019827.1_987534_988278_+	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|256aa|up_5|NZ_AP019827.1_988304_989072_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|379aa|up_4|NZ_AP019827.1_989107_990244_-	TIGR02872, UPF0118_membrane_protein_YtvI, sporulation integral membrane protein YtvI	NA|531aa|up_3|NZ_AP019827.1_990598_992191_+	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional	NA|225aa|up_2|NZ_AP019827.1_992218_992893_+	NA	NA|298aa|up_1|NZ_AP019827.1_992924_993818_+	PRK01212, PRK01212, homoserine kinase; Provisional	NA|55aa|up_0|NZ_AP019827.1_993918_994083_+	NA	NA|163aa|down_0|NZ_AP019827.1_995129_995618_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|403aa|down_1|NZ_AP019827.1_995617_996826_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|200aa|down_2|NZ_AP019827.1_996971_997571_+	cd00279, YlxR, Ylxr homologs; group of conserved hypothetical bacterial proteins of unknown function; structure revealed putative RNA binding cleft; proteins are encoded by an operon that includes other proteins involved in transcription and/or translation	NA|123aa|down_3|NZ_AP019827.1_1000583_1000952_+	pfam02033, RBFA, Ribosome-binding factor A	NA|564aa|down_4|NZ_AP019827.1_1001091_1002783_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|429aa|down_5|NZ_AP019827.1_1002839_1004126_+	PRK01490, tig, trigger factor; Provisional	NA|192aa|down_6|NZ_AP019827.1_1004319_1004895_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|411aa|down_7|NZ_AP019827.1_1005072_1006305_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|784aa|down_8|NZ_AP019827.1_1006425_1008777_+	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|180aa|down_9|NZ_AP019827.1_1009190_1009730_-	NA
GCF_008327825.1_ASM832782v1	NZ_AP019827	Leptotrichia shahii strain JCM16776	4	1021246-1021352	2	CRISPRCasFinder	no	csx1,csx20,cas1,cas2,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7	csa3,cas14j,cas14k,cas13a,cas1,cas2,DEDDh,cas3,csx1,csx20,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas5,cas7,cas8b2,cas6,WYL,DinG	Type III-C,Type III-D,Type III-A,Type III-B	GTAAAAGTAGTATATCCATTAAAACAAGG	29	0	0	NA	NA	NA	1	1	TypeIII-C,TypeIII-D,TypeIII-A,TypeIII-B	csa3,cas14j,cas14k,cas13a,cas1,cas2,DEDDh,cas3,csx1,csx20,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas5,cas7,cas8b2,cas6,WYL,DinG	NA|180aa|up_8|NZ_AP019827.1_1009190_1009730_-,NA|164aa|up_2|NZ_AP019827.1_1017911_1018403_+,NA|571aa|down_2|NZ_AP019827.1_1024258_1025971_+,csx20|129aa|down_3|NZ_AP019827.1_1026685_1027072_+	NA|784aa|up_9|NZ_AP019827.1_1006425_1008777_+	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|180aa|up_8|NZ_AP019827.1_1009190_1009730_-	NA	NA|1170aa|up_7|NZ_AP019827.1_1009806_1013316_-	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase	NA|80aa|up_6|NZ_AP019827.1_1013843_1014083_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|124aa|up_5|NZ_AP019827.1_1014258_1014630_+	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA|700aa|up_4|NZ_AP019827.1_1014693_1016793_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|232aa|up_3|NZ_AP019827.1_1016845_1017541_+	pfam14253, AbiH, Bacteriophage abortive infection AbiH	NA|164aa|up_2|NZ_AP019827.1_1017911_1018403_+	NA	NA|283aa|up_1|NZ_AP019827.1_1018976_1019825_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|336aa|up_0|NZ_AP019827.1_1019930_1020938_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	csx1|451aa|down_0|NZ_AP019827.1_1021577_1022930_+	cd09668, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	csx1|427aa|down_1|NZ_AP019827.1_1022966_1024247_+	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family	NA|571aa|down_2|NZ_AP019827.1_1024258_1025971_+	NA	csx20|129aa|down_3|NZ_AP019827.1_1026685_1027072_+	NA	cas1|324aa|down_4|NZ_AP019827.1_1027716_1028688_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|97aa|down_5|NZ_AP019827.1_1028745_1029036_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas4|208aa|down_6|NZ_AP019827.1_1029051_1029675_+	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas10|882aa|down_7|NZ_AP019827.1_1030737_1033383_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|200aa|down_8|NZ_AP019827.1_1033395_1033995_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|236aa|down_9|NZ_AP019827.1_1034010_1034718_+	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3
GCF_008327825.1_ASM832782v1	NZ_AP019827	Leptotrichia shahii strain JCM16776	5	1199690-1200563	2,3,3	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas7,cas8b2,cas6,cas2,cas1,cas4,WYL	csa3,cas14j,cas14k,cas13a,cas1,cas2,DEDDh,cas3,csx1,csx20,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas5,cas7,cas8b2,cas6,WYL,DinG	Unclear	ATTTACAATACAAAATGTTCCTATTAAAT,ATTTACAATACAAAATGTTCCTATTAAAT,ATTTACAATACAAAATGTTCCTATTAAAT	29,29,29	0	0	NA	NA	NA:NA:NA	13,13,13	13	Unclear	csa3,cas14j,cas14k,cas13a,cas1,cas2,DEDDh,cas3,csx1,csx20,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas5,cas7,cas8b2,cas6,WYL,DinG	NA,NA|287aa|down_3|NZ_AP019827.1_1206136_1206997_-,NA|57aa|down_4|NZ_AP019827.1_1206981_1207152_-	NA|117aa|up_9|NZ_AP019827.1_1188157_1188508_+	cd06985, cupin_BF4112, Bacteroides fragilis BF4112 and related proteins, cupin domain	NA|105aa|up_8|NZ_AP019827.1_1188667_1188982_+	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|284aa|up_7|NZ_AP019827.1_1189139_1189991_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|281aa|up_6|NZ_AP019827.1_1190026_1190869_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|383aa|up_5|NZ_AP019827.1_1191142_1192291_+	PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional	cas3|811aa|up_4|NZ_AP019827.1_1192649_1195082_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|251aa|up_3|NZ_AP019827.1_1195112_1195865_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|299aa|up_2|NZ_AP019827.1_1195934_1196831_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|596aa|up_1|NZ_AP019827.1_1196834_1198622_-	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|261aa|up_0|NZ_AP019827.1_1198639_1199422_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas2|93aa|down_0|NZ_AP019827.1_1200759_1201038_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|down_1|NZ_AP019827.1_1201039_1202032_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|163aa|down_2|NZ_AP019827.1_1202156_1202645_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|287aa|down_3|NZ_AP019827.1_1206136_1206997_-	NA	NA|57aa|down_4|NZ_AP019827.1_1206981_1207152_-	NA	NA|222aa|down_5|NZ_AP019827.1_1207206_1207872_-	cd02201, FtsZ_type1, Filamenting temperature sensitive mutant Z, type 1	WYL|314aa|down_6|NZ_AP019827.1_1207897_1208839_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|481aa|down_7|NZ_AP019827.1_1209456_1210899_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|161aa|down_8|NZ_AP019827.1_1210992_1211475_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|144aa|down_9|NZ_AP019827.1_1211796_1212228_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
GCF_008327825.1_ASM832782v1	NZ_AP019827	Leptotrichia shahii strain JCM16776	6	1203670-1205779	4,4,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas7,cas8b2,cas6,cas2,cas1,cas4,WYL	csa3,cas14j,cas14k,cas13a,cas1,cas2,DEDDh,cas3,csx1,csx20,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas5,cas7,cas8b2,cas6,WYL,DinG	Unclear	ATTTAATAGGAACATTTTGTATTGTAAAT,ATTTAATAGGAACATTTTGTATTGTAAA,TTTACAATACAAAATGTTCCTATTAAA	29,28,27	0	0	NA	NA	NA:NA:NA	32,32,32	32	Unclear	csa3,cas14j,cas14k,cas13a,cas1,cas2,DEDDh,cas3,csx1,csx20,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas5,cas7,cas8b2,cas6,WYL,DinG	NA,NA|287aa|down_0|NZ_AP019827.1_1206136_1206997_-,NA|57aa|down_1|NZ_AP019827.1_1206981_1207152_-	NA|281aa|up_9|NZ_AP019827.1_1190026_1190869_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|383aa|up_8|NZ_AP019827.1_1191142_1192291_+	PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional	cas3|811aa|up_7|NZ_AP019827.1_1192649_1195082_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|251aa|up_6|NZ_AP019827.1_1195112_1195865_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|299aa|up_5|NZ_AP019827.1_1195934_1196831_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|596aa|up_4|NZ_AP019827.1_1196834_1198622_-	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|261aa|up_3|NZ_AP019827.1_1198639_1199422_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas2|93aa|up_2|NZ_AP019827.1_1200759_1201038_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|up_1|NZ_AP019827.1_1201039_1202032_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas4|163aa|up_0|NZ_AP019827.1_1202156_1202645_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	NA|287aa|down_0|NZ_AP019827.1_1206136_1206997_-	NA	NA|57aa|down_1|NZ_AP019827.1_1206981_1207152_-	NA	NA|222aa|down_2|NZ_AP019827.1_1207206_1207872_-	cd02201, FtsZ_type1, Filamenting temperature sensitive mutant Z, type 1	WYL|314aa|down_3|NZ_AP019827.1_1207897_1208839_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|481aa|down_4|NZ_AP019827.1_1209456_1210899_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|161aa|down_5|NZ_AP019827.1_1210992_1211475_-	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|144aa|down_6|NZ_AP019827.1_1211796_1212228_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|263aa|down_7|NZ_AP019827.1_1212474_1213263_+	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|167aa|down_8|NZ_AP019827.1_1213468_1213969_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|552aa|down_9|NZ_AP019827.1_1214163_1215819_-	COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
GCF_008327825.1_ASM832782v1	NZ_AP019827	Leptotrichia shahii strain JCM16776	7	1401617-1402022	5,5,4	CRISPRCasFinder,CRT,PILER-CR	no		csa3,cas14j,cas14k,cas13a,cas1,cas2,DEDDh,cas3,csx1,csx20,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas5,cas7,cas8b2,cas6,WYL,DinG	Orphan	GTTTCAATCCTTGTTTTAATGGATACTCTACTTTAAC,GTTTCAATCCTTGTTTTAATGGATACTCTACTTTAAC,GTTAAAGTAGAGTATCCATTAAAACAAGGATTGAAAC	37,37,37	0	0	NA	NA	I-B:I-B:I-B	5,5,5	5	Orphan	csa3,cas14j,cas14k,cas13a,cas1,cas2,DEDDh,cas3,csx1,csx20,cas4,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas5,cas7,cas8b2,cas6,WYL,DinG	NA|79aa|up_7|NZ_AP019827.1_1391204_1391441_+,NA|114aa|up_5|NZ_AP019827.1_1391896_1392238_-,NA|273aa|down_2|NZ_AP019827.1_1404284_1405103_-	NA|568aa|up_9|NZ_AP019827.1_1388850_1390554_+	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase	NA|153aa|up_8|NZ_AP019827.1_1390661_1391120_+	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional	NA|79aa|up_7|NZ_AP019827.1_1391204_1391441_+	NA	NA|89aa|up_6|NZ_AP019827.1_1391430_1391697_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|114aa|up_5|NZ_AP019827.1_1391896_1392238_-	NA	NA|581aa|up_4|NZ_AP019827.1_1392461_1394204_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|441aa|up_3|NZ_AP019827.1_1394594_1395917_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|236aa|up_2|NZ_AP019827.1_1396141_1396849_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|531aa|up_1|NZ_AP019827.1_1397115_1398708_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|497aa|up_0|NZ_AP019827.1_1399971_1401462_+	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional	NA|198aa|down_0|NZ_AP019827.1_1402547_1403141_-	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART)	NA|333aa|down_1|NZ_AP019827.1_1403221_1404220_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|273aa|down_2|NZ_AP019827.1_1404284_1405103_-	NA	NA|484aa|down_3|NZ_AP019827.1_1405112_1406564_-	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|239aa|down_4|NZ_AP019827.1_1406681_1407398_-	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|160aa|down_5|NZ_AP019827.1_1407518_1407998_-	pfam00731, AIRC, AIR carboxylase	NA|358aa|down_6|NZ_AP019827.1_1408021_1409095_-	pfam12889, DUF3829, Protein of unknown function (DUF3829)	NA|1269aa|down_7|NZ_AP019827.1_1409133_1412940_-	TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase, clade II	NA|107aa|down_8|NZ_AP019827.1_1413454_1413775_+	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|473aa|down_9|NZ_AP019827.1_1413871_1415290_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter
