The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	2866342	775491	783311	2866342		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|775491_776547_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|776546_777233_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|777207_777681_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|778022_778463_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|778742_779327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|779425_780139_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|780142_780562_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|780563_781232_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|781582_782176_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|782159_783311_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	2866342	795283	810014	2866342		uncultured_Caudovirales_phage(50.0%)	16	NA	NA
WP_000663030.1|795283_796342_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197273.1|796692_797235_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|797858_798776_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|798866_798968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193752.1|799045_800551_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_001788366.1|800616_800862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000930014.1|800891_801392_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_149557697.1|801411_802278_-	EamA family transporter	NA	NA	NA	NA	NA
WP_001790091.1|802662_802929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000692521.1|803078_803477_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|803439_805545_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|805662_806634_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|807147_807303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|807341_808313_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|808299_809256_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|809252_810014_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	2866342	888724	903764	2866342	integrase,capsid,terminase	Staphylococcus_phage(64.71%)	21	891261:891277	905216:905232
WP_000571218.1|888724_889750_+	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
WP_000520233.1|889742_890438_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|890455_891277_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
891261:891277	attL	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000266158.1|891419_892640_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
WP_000734020.1|892727_893456_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
WP_001033321.1|893479_894208_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
WP_000281658.1|894224_894683_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
WP_001260004.1|894694_895027_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243849.1|895219_895483_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	4.1e-36
WP_000091732.1|895475_895748_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
WP_000784892.1|895759_895933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|895899_896103_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403840.1|896104_896488_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_001103959.1|896488_896737_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
WP_149557699.1|896828_899201_+	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
WP_001081424.1|899871_900216_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000884055.1|900440_900647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000657538.1|900633_901692_+|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
WP_000253084.1|901875_902367_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
WP_086034110.1|902363_902519_+|terminase	terminase	terminase	A0A1W6JQF0	Staphylococcus_phage	92.0	3.1e-20
WP_000801979.1|902795_903764_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
905216:905232	attR	TTATTCCTGCTAAATAA	NA	NA	NA	NA
>prophage 4
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	2866342	1068868	1077341	2866342		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1068868_1069351_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1069337_1070462_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1070465_1071170_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1071169_1071433_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1071434_1072106_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_149557700.1|1072098_1074288_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	4.6e-141
WP_000483713.1|1074266_1075751_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1075743_1076772_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1076774_1077341_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	2866342	1519108	1606060	2866342	holin,plate,head,protease,portal,tRNA,integrase,capsid,terminase,tail	Staphylococcus_phage(84.0%)	104	1555471:1555491	1601078:1601098
WP_000858789.1|1519108_1520401_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525078.1|1520722_1523416_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|1523439_1524411_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1524397_1525600_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|1525604_1526747_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1526987_1527305_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1527641_1528322_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1528393_1528981_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|1528970_1529546_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389524.1|1529559_1530804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1530810_1532109_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1532118_1533183_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1533208_1534375_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1534760_1534961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1535169_1535619_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001817755.1|1535710_1536655_-	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1536671_1537397_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|1537399_1537972_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1538402_1538675_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1538845_1539844_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165536.1|1539860_1541171_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|1541392_1542568_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1542824_1543016_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1543132_1543249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1543279_1543939_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|1544015_1544984_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1545098_1546085_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|1546245_1546362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1546486_1547947_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1548099_1549479_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1549468_1550422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1550529_1550778_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1550883_1551429_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1551707_1551827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1552025_1552940_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1552954_1553161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000472936.1|1553153_1554092_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|1554148_1555066_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_061390271.1|1555156_1555408_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.4e-25
1555471:1555491	attL	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
WP_024937002.1|1555590_1556574_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239545.1|1556569_1557508_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_000909220.1|1557897_1559352_-	CHAP domain-containing protein	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000339146.1|1559362_1559665_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1559800_1560100_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1560145_1560310_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1560302_1560692_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067127.1|1560691_1562158_-|plate	BppU family phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_000429558.1|1562157_1564068_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1564083_1564374_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1564373_1565957_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1565965_1566790_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003408.1|1566789_1572990_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
WP_000438833.1|1573003_1573162_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1573203_1573554_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1573611_1574067_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|1574158_1574800_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|1574834_1575230_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|1575230_1575632_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|1575628_1575961_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1575972_1576251_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1576319_1577483_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|1577494_1578268_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_149557708.1|1578251_1579490_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	99.5	1.7e-233
WP_000153540.1|1579494_1581186_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_000778933.1|1581175_1581481_-|terminase	terminase	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160686.1|1581607_1581922_-	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000528512.1|1582078_1582516_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_001801648.1|1582528_1583896_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
WP_001548892.1|1583876_1584167_-	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_001801650.1|1584300_1584399_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|1584507_1586955_-	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_001548893.1|1587009_1587216_+	hypothetical protein	NA	A0A1X9IGZ9	Staphylococcus_phage	100.0	7.6e-30
WP_000592202.1|1587373_1587760_-	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000608275.1|1587752_1587989_-	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000141180.1|1587981_1588185_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000195794.1|1588181_1588388_-	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000185671.1|1588424_1588961_-	hypothetical protein	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_001065039.1|1588953_1589202_-	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000132194.1|1589216_1589459_-	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_000235324.1|1589473_1589674_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000022728.1|1589676_1589934_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000113974.1|1589933_1590335_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1590334_1590520_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001801657.1|1590532_1592485_-	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_000645048.1|1592552_1593110_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_000762552.1|1593135_1594302_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000985979.1|1594298_1594661_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000291481.1|1594674_1594935_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000163431.1|1594939_1595242_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000829612.1|1595234_1595552_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_001124198.1|1595817_1596081_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|1596105_1596321_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001548903.1|1596367_1596607_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001115060.1|1596863_1597055_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|1597215_1597545_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000525001.1|1597557_1598019_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
WP_000755722.1|1598036_1598471_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000449655.1|1598499_1598895_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001795334.1|1598984_1599131_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191466.1|1599127_1599742_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|1599867_1601073_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_001548909.1|1601115_1602270_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.7	3.9e-115
1601078:1601098	attR	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
WP_001033767.1|1602296_1603142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000987769.1|1604308_1606060_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
>prophage 6
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	2866342	1739270	1748313	2866342	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1739270_1739789_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1739810_1742084_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1742286_1744566_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1744840_1745101_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1745119_1746259_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1746281_1747307_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1747308_1748313_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	2866342	1873784	1953104	2866342	tRNA,protease,bacteriocin,transposase	Staphylococcus_phage(96.61%)	78	NA	NA
WP_050956380.1|1873784_1880345_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_000836465.1|1880670_1880982_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001108732.1|1881003_1883418_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1883708_1884890_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1884999_1885953_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1885949_1886513_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1886632_1887034_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1888612_1889440_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1889442_1889562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001834472.1|1889573_1889765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1889673_1890675_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1890796_1891261_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1891273_1892455_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1892465_1893098_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384181.1|1893104_1894136_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_001261677.1|1894628_1896131_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1896653_1896968_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1896967_1898260_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1898277_1898673_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_149557712.1|1898967_1899822_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1900097_1900322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1900520_1900991_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1901103_1901547_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1901533_1901977_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1902272_1902908_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1903347_1904061_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1904320_1904623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200541.1|1904878_1905244_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
WP_000623471.1|1905240_1905594_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1907676_1908510_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1908721_1909630_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1909754_1910948_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1911318_1912911_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_002868962.1|1913906_1914653_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1914657_1915131_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1915196_1915454_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1915450_1916452_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1916456_1917935_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1918093_1918549_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1918851_1919502_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1919582_1920578_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000188802.1|1920809_1921280_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	80.1	7.0e-63
WP_000627551.1|1921320_1921665_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1921762_1922314_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1922531_1923173_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1923286_1923472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1923473_1923650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149557713.1|1923660_1924044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001790863.1|1924235_1924445_-|transposase	transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	100.0	1.4e-31
WP_001549059.1|1924647_1924791_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1924993_1925089_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1925211_1925313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002868972.1|1925660_1926020_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000831218.1|1926558_1930671_-	SMEK domain-containing protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_000072576.1|1931520_1932720_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_011443644.1|1932712_1934452_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	4.4e-288
WP_001791797.1|1934432_1934567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1934631_1935351_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1935501_1936218_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1936319_1936427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1936375_1937095_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1937215_1937935_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1937992_1938715_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1938839_1939547_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001790219.1|1939982_1940201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001092763.1|1940510_1941077_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1941550_1942249_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1942245_1943007_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1943003_1943696_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1943718_1945092_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1945101_1945620_-	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1945635_1946880_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_149557714.1|1946872_1949854_-|bacteriocin	bacteriocin biosynthesis protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	96.9	0.0e+00
WP_000416756.1|1949918_1950062_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001790705.1|1950505_1950697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000416759.1|1950798_1950942_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1951183_1952167_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|1952168_1953104_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 8
NZ_CP031888	Staphylococcus aureus strain CFSAN082782 chromosome, complete genome	2866342	2050776	2138286	2866342	holin,protease,head,portal,integrase,capsid,terminase,tail	Staphylococcus_phage(92.31%)	112	2099472:2099489	2124403:2124420
WP_000827748.1|2050776_2051943_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2051973_2052300_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2052591_2052765_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011538.1|2052745_2053348_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2053618_2054440_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2054432_2055902_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2056085_2057162_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|2057181_2057976_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2058047_2058155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323167.1|2058165_2059728_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2059932_2061030_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2061401_2061962_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2062014_2062944_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2063138_2063312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2063363_2064743_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2064862_2065891_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2066160_2066562_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2067134_2067308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2067758_2068799_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2068855_2069698_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2069694_2070252_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2070311_2070836_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2070956_2071520_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2071585_2072326_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2072325_2073198_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2073194_2073875_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2073875_2074772_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2074768_2075149_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2075412_2075589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2075831_2075930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2076129_2077416_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001549158.1|2078040_2079795_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|2080752_2080932_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001795394.1|2080955_2081264_+	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	2.1e-39
WP_001791826.1|2081242_2081503_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2081555_2081906_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2082454_2082904_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|2082998_2083457_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000919350.1|2083983_2084475_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2084665_2085421_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2085432_2085687_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2085738_2085846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2085898_2086075_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2086224_2086521_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2086578_2086866_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2086912_2087065_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|2087054_2090840_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567394.1|2090855_2092340_-|tail	phage tail protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_001551779.1|2092336_2096866_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_001096354.1|2097110_2097461_-	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_094969769.1|2097510_2097750_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_000260578.1|2097776_2098421_-|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_000565500.1|2098424_2098829_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000114229.1|2098825_2099230_-	hypothetical protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000755150.1|2099226_2099589_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2099472:2099489	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2099572_2099857_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2099846_2100131_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2100150_2101296_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2101319_2102057_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2102040_2103228_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2103243_2104905_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2104901_2105246_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2105375_2105675_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2105906_2106323_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|2106350_2106551_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|2106550_2106700_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2106696_2107083_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2107079_2107286_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2107282_2107528_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000181819.1|2107564_2108098_-	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_000700108.1|2108090_2108333_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_001065101.1|2108322_2108559_-	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_001549172.1|2108551_2108923_-	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_000131383.1|2108931_2109174_-	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_000101288.1|2109177_2109546_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401977.1|2109558_2109963_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000338530.1|2109971_2110190_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148333.1|2110196_2111090_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934753.1|2111119_2111590_-	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
WP_071665632.1|2111590_2112208_-	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000138475.1|2112288_2113209_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700561.1|2113210_2115154_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_001205732.1|2115162_2115426_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291513.1|2115434_2115695_-	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001549178.1|2115734_2115995_-	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_001285960.1|2116089_2116251_-	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001120199.1|2116247_2116568_-	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_000549548.1|2116626_2116857_+	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001148642.1|2117045_2117798_-	oxidoreductase	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_149557715.1|2117848_2118178_+	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	99.1	1.3e-52
WP_001025404.1|2118166_2118382_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2118397_2118661_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|2118657_2118831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2118793_2119507_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2119522_2120455_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2120460_2120802_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705246.1|2121005_2121188_+	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_001549185.1|2121265_2121979_+	toxin MazF	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000857199.1|2122169_2123207_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_000595324.1|2124325_2125342_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2124403:2124420	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791407.1|2125363_2126419_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206639.1|2126853_2128077_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812010.1|2128448_2129294_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2129355_2130267_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2130427_2131735_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2132587_2133031_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001797573.1|2133195_2133573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293058.1|2133890_2134481_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
WP_000128898.1|2134477_2134690_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_000240645.1|2135391_2137008_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2137083_2137368_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2137542_2138286_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 1
NZ_CP031889	Staphylococcus aureus strain CFSAN082782 plasmid pMRSA_23, complete sequence	27068	0	13689	27068	transposase	Streptococcus_phage(50.0%)	15	NA	NA
WP_000369394.1|751_1489_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000505741.1|1502_1706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105956.1|1735_2410_+|transposase	IS6 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	98.7	2.6e-127
WP_000627289.1|3182_3713_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	97.8	1.3e-89
WP_001096887.1|3805_4600_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_078154339.1|5231_5447_+	WYL domain-containing protein	NA	E4ZFP5	Streptococcus_phage	98.6	3.4e-33
WP_001105991.1|5615_6290_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
WP_000690637.1|6959_7538_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
WP_000182645.1|7801_8182_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096381.1|8171_9929_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733287.1|10035_10881_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.0	5.7e-31
WP_000418035.1|11406_11826_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000481279.1|11949_12921_+	oxidoreductase	NA	NA	NA	NA	NA
WP_001791613.1|13092_13185_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000119690.1|13341_13689_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	36.8	4.9e-13
>prophage 2
NZ_CP031889	Staphylococcus aureus strain CFSAN082782 plasmid pMRSA_23, complete sequence	27068	19988	25469	27068	transposase	Marinitoga_camini_virus(25.0%)	6	NA	NA
WP_000797248.1|19988_20174_-	helix-turn-helix transcriptional regulator	NA	A0A142LP09	Marinitoga_camini_virus	37.9	9.9e-05
WP_001049146.1|20178_20517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000583528.1|20762_21371_-	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	30.2	1.0e-13
WP_000196697.1|21856_22756_-	Mph(C) family macrolide 2'-phosphotransferase	NA	NA	NA	NA	NA
WP_000438874.1|22854_24321_-	ABC-F type ribosomal protection protein Msr(A)	NA	A0A2I4R674	Erysipelothrix_phage	37.7	6.6e-67
WP_001105960.1|24794_25469_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
