assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008329885.1_ASM832988v1	NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	1	432926-433026	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_8|NZ_CP031890.1_425532_425916_-,NA|98aa|up_6|NZ_CP031890.1_426869_427163_-,NA|34aa|up_1|NZ_CP031890.1_432150_432252_+,NA|86aa|up_0|NZ_CP031890.1_432459_432717_-,NA|221aa|down_1|NZ_CP031890.1_434116_434779_-,NA|179aa|down_7|NZ_CP031890.1_440870_441407_-	NA|194aa|up_9|NZ_CP031890.1_424885_425467_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|NZ_CP031890.1_425532_425916_-	NA	NA|209aa|up_7|NZ_CP031890.1_426170_426797_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|NZ_CP031890.1_426869_427163_-	NA	NA|508aa|up_5|NZ_CP031890.1_427241_428765_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP031890.1_428780_429350_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP031890.1_429841_430597_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP031890.1_430677_432066_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|NZ_CP031890.1_432150_432252_+	NA	NA|86aa|up_0|NZ_CP031890.1_432459_432717_-	NA	NA|319aa|down_0|NZ_CP031890.1_433042_433999_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP031890.1_434116_434779_-	NA	NA|136aa|down_2|NZ_CP031890.1_434921_435329_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP031890.1_435841_436420_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP031890.1_436419_437688_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP031890.1_437725_439192_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP031890.1_439216_440758_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP031890.1_440870_441407_-	NA	NA|235aa|down_8|NZ_CP031890.1_441799_442504_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP031890.1_442902_443175_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_008329885.1_ASM832988v1	NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	2	668055-668147	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP031890.1_664539_664647_+,NA|169aa|down_4|NZ_CP031890.1_671894_672401_+,NA|239aa|down_5|NZ_CP031890.1_672562_673279_+	NA|313aa|up_9|NZ_CP031890.1_658741_659680_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP031890.1_659890_660427_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP031890.1_660595_661072_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP031890.1_661111_662407_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP031890.1_662434_662956_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP031890.1_663454_664465_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP031890.1_664539_664647_+	NA	NA|128aa|up_2|NZ_CP031890.1_664772_665156_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP031890.1_665152_666814_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP031890.1_667201_667837_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP031890.1_668275_669103_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP031890.1_669250_670201_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP031890.1_670255_670975_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP031890.1_670958_671759_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP031890.1_671894_672401_+	NA	NA|239aa|down_5|NZ_CP031890.1_672562_673279_+	NA	NA|263aa|down_6|NZ_CP031890.1_673447_674236_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP031890.1_674486_674861_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|179aa|down_8|NZ_CP031890.1_676576_677113_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|168aa|down_9|NZ_CP031890.1_677093_677597_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]
GCF_008329885.1_ASM832988v1	NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	3	843845-843930	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	843875-843900|843875-843900|843875-843900|843875-843900|843875-843900	NZ_CP031890.1_2823278-2823303|NZ_CP031890.1_2823334-2823359|NZ_CP031890.1_806837-806812|NZ_CP031890.1_806893-806868|NZ_CP031890.1_949983-949958	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP031890.1_831097_831937_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP031890.1_832110_832761_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP031890.1_832757_832994_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP031890.1_833262_835248_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP031890.1_835255_838102_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP031890.1_838763_839696_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP031890.1_839701_840541_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP031890.1_840548_841034_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP031890.1_841041_842481_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP031890.1_842547_843483_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP031890.1_844362_845274_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP031890.1_845270_846266_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP031890.1_846375_847320_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP031890.1_847893_848481_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP031890.1_848723_849626_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP031890.1_850327_850957_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP031890.1_851716_852730_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP031890.1_852782_853793_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP031890.1_853931_855122_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP031890.1_855243_856005_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_008329885.1_ASM832988v1	NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	4	887174-887255	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	887198-887231|887198-887231	NZ_CP031890.1_1376190-1376157|NZ_CP031890.1_1465349-1465382	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP031890.1_886076_886190_+,NA	NA|206aa|up_9|NZ_CP031890.1_880931_881549_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP031890.1_881703_882198_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP031890.1_882596_883019_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP031890.1_883166_883883_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP031890.1_883965_884505_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP031890.1_884654_884975_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP031890.1_885118_885475_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP031890.1_885632_886013_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP031890.1_886076_886190_+	NA	NA|293aa|up_0|NZ_CP031890.1_886191_887070_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP031890.1_887811_888198_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP031890.1_888190_888487_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP031890.1_888736_889762_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP031890.1_889754_890450_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP031890.1_890467_891289_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP031890.1_891431_892652_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP031890.1_892739_893468_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP031890.1_893491_894220_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP031890.1_894236_894695_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP031890.1_894706_895039_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_008329885.1_ASM832988v1	NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	5	949984-950266	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	950014-950039|950014-950039|950014-950039|950014-950039|950128-950153|950128-950153	NZ_CP031890.1_949958-949983|NZ_CP031890.1_2823303-2823278|NZ_CP031890.1_2823359-2823334|NZ_CP031890.1_806812-806837|NZ_CP031890.1_843956-843931|NZ_CP031890.1_394259-394284	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP031890.1_938872_940369_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP031890.1_940361_940691_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP031890.1_940702_941131_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP031890.1_941123_943529_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP031890.1_943659_944043_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP031890.1_944106_944700_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP031890.1_945115_945493_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP031890.1_945854_946982_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP031890.1_947289_948480_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP031890.1_948588_949833_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP031890.1_950335_951265_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP031890.1_951506_952886_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP031890.1_952875_954081_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP031890.1_954431_955763_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP031890.1_956087_956663_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP031890.1_956667_957192_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP031890.1_957207_957783_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP031890.1_957942_961419_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP031890.1_961419_965073_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP031890.1_965238_966141_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_008329885.1_ASM832988v1	NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	6	1083656-1083743	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP031890.1_1083532_1083652_+,NA|45aa|down_0|NZ_CP031890.1_1083752_1083887_-,NA|432aa|down_1|NZ_CP031890.1_1084038_1085334_+,NA|68aa|down_2|NZ_CP031890.1_1085354_1085558_-	NA|730aa|up_9|NZ_CP031890.1_1072110_1074300_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP031890.1_1074278_1075763_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP031890.1_1075755_1076784_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP031890.1_1076786_1077353_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP031890.1_1077367_1078846_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP031890.1_1078867_1080115_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP031890.1_1080379_1081186_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP031890.1_1081178_1082579_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP031890.1_1082593_1083169_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP031890.1_1083532_1083652_+	NA	NA|45aa|down_0|NZ_CP031890.1_1083752_1083887_-	NA	NA|432aa|down_1|NZ_CP031890.1_1084038_1085334_+	NA	NA|68aa|down_2|NZ_CP031890.1_1085354_1085558_-	NA	NA|391aa|down_3|NZ_CP031890.1_1085758_1086931_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_4|NZ_CP031890.1_1086984_1087527_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_5|NZ_CP031890.1_1087680_1087947_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_6|NZ_CP031890.1_1087949_1089668_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_7|NZ_CP031890.1_1089904_1090138_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_8|NZ_CP031890.1_1090335_1091697_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_9|NZ_CP031890.1_1091693_1092713_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
GCF_008329885.1_ASM832988v1	NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	7	2025331-2025409	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2025354-2025386|2025354-2025386|2025354-2025386|2025354-2025386|2025354-2025386|2025354-2025386	NZ_CP031890.1_843911-843943|NZ_CP031890.1_1690271-1690303|NZ_CP031890.1_2659965-2659997|NZ_CP031890.1_1168019-1167987|NZ_CP031890.1_1376144-1376112|NZ_CP031890.1_1465395-1465427	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP031890.1_2019525_2019801_+,NA|129aa|up_1|NZ_CP031890.1_2023786_2024173_-,NA|138aa|down_1|NZ_CP031890.1_2027092_2027506_-,NA|37aa|down_2|NZ_CP031890.1_2027534_2027645_-,NA|31aa|down_6|NZ_CP031890.1_2030650_2030743_-	NA|419aa|up_9|NZ_CP031890.1_2017448_2018705_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP031890.1_2018707_2018908_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP031890.1_2019054_2019519_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP031890.1_2019525_2019801_+	NA	NA|406aa|up_5|NZ_CP031890.1_2020078_2021296_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP031890.1_2021411_2022041_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP031890.1_2022030_2023074_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP031890.1_2023070_2023772_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP031890.1_2023786_2024173_-	NA	NA|253aa|up_0|NZ_CP031890.1_2024389_2025148_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP031890.1_2025675_2026662_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP031890.1_2027092_2027506_-	NA	NA|37aa|down_2|NZ_CP031890.1_2027534_2027645_-	NA	NA|244aa|down_3|NZ_CP031890.1_2027730_2028462_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP031890.1_2028463_2029777_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP031890.1_2030068_2030569_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP031890.1_2030650_2030743_-	NA	DEDDh|185aa|down_7|NZ_CP031890.1_2030957_2031512_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP031890.1_2031579_2032650_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP031890.1_2032896_2033427_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_008329885.1_ASM832988v1	NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	8	2260087-2260237	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP031890.1_2254958_2255189_-,NA|364aa|up_0|NZ_CP031890.1_2258977_2260069_+,NA|35aa|down_0|NZ_CP031890.1_2260568_2260673_-,NA|31aa|down_2|NZ_CP031890.1_2262784_2262877_+	NA|237aa|up_9|NZ_CP031890.1_2250568_2251279_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP031890.1_2251399_2251843_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP031890.1_2252042_2252456_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP031890.1_2252913_2254287_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP031890.1_2254958_2255189_-	NA	NA|313aa|up_4|NZ_CP031890.1_2255219_2256158_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP031890.1_2256592_2257258_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP031890.1_2257409_2257730_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP031890.1_2257731_2258712_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP031890.1_2258977_2260069_+	NA	NA|35aa|down_0|NZ_CP031890.1_2260568_2260673_-	NA	NA|379aa|down_1|NZ_CP031890.1_2261359_2262496_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP031890.1_2262784_2262877_+	NA	NA|286aa|down_3|NZ_CP031890.1_2263581_2264439_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP031890.1_2264506_2265289_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP031890.1_2265520_2267326_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP031890.1_2268006_2269545_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP031890.1_2269579_2271712_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP031890.1_2271723_2272158_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP031890.1_2272157_2273264_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_008329885.1_ASM832988v1	NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	9	2384005-2384198	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2384028-2384060|2384028-2384060|2384028-2384060|2384028-2384060|2384028-2384060|2384084-2384119|2384084-2384119|2384084-2384119|2384084-2384119|2384143-2384175|2384143-2384175|2384143-2384175|2384143-2384175	NZ_CP031890.1_843911-843943|NZ_CP031890.1_1465395-1465427|NZ_CP031890.1_2659965-2659997|NZ_CP031890.1_1168019-1167987|NZ_CP031890.1_1376144-1376112|NZ_CP031890.1_1167966-1167931|NZ_CP031890.1_1868768-1868733|NZ_CP031890.1_1690210-1690245|NZ_CP031890.1_2036098-2036133|NZ_CP031890.1_843911-843943|NZ_CP031890.1_2659965-2659997|NZ_CP031890.1_1168019-1167987|NZ_CP031890.1_1376144-1376112	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP031890.1_2374532_2374697_+,NA|106aa|up_8|NZ_CP031890.1_2374941_2375259_+,NA|84aa|up_5|NZ_CP031890.1_2380383_2380635_+,NA|57aa|up_0|NZ_CP031890.1_2383774_2383945_+,NA	NA|55aa|up_9|NZ_CP031890.1_2374532_2374697_+	NA	NA|106aa|up_8|NZ_CP031890.1_2374941_2375259_+	NA	NA|1056aa|up_7|NZ_CP031890.1_2375445_2378613_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP031890.1_2378729_2379995_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP031890.1_2380383_2380635_+	NA	NA|255aa|up_4|NZ_CP031890.1_2380626_2381391_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP031890.1_2381552_2381993_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP031890.1_2381985_2383197_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP031890.1_2383298_2383649_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP031890.1_2383774_2383945_+	NA	NA|341aa|down_0|NZ_CP031890.1_2384339_2385362_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP031890.1_2385381_2385981_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP031890.1_2385987_2386221_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP031890.1_2386226_2386673_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP031890.1_2386686_2387172_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP031890.1_2387168_2388428_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP031890.1_2388490_2388985_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP031890.1_2388986_2389493_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP031890.1_2389523_2390528_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP031890.1_2390697_2391303_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
