bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	3.1|843875|26|NZ_CP031890|CRISPRCasFinder	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	96.154	26	1	0	1	26	2823278	2823303	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.37e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2823278-2823303	CCGCCAGCTTCTATGTTGGGGCCCCG	1
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	3.1|843875|26|NZ_CP031890|CRISPRCasFinder	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	96.154	26	1	0	1	26	2823334	2823359	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.37e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	2823334-2823359	CCGCCAGCTTCTTTGTTGGGGCCCCG	1
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	3.1|843875|26|NZ_CP031890|CRISPRCasFinder	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	96.154	26	1	0	1	26	806837	806812	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.37e-05	39.6	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	806812-806837	CGGGGCCCCAACACAGAAGCAGGCGG	1
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	3.1|843875|26|NZ_CP031890|CRISPRCasFinder	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	92.308	26	2	0	1	26	806893	806868	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.23e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	806868-806893	CGGGGCCCCAACATAGAAGCAGGCGG	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	3.1|843875|26|NZ_CP031890|CRISPRCasFinder	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	92.308	26	2	0	1	26	949983	949958	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.23e-04	36.5	1.0	CCGCCAGCTTCTGTGTTGGGGCCCCG	949958-949983	CGGGGCCCCAACACAGAGGCTGGTGG	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	4.1|887198|34|NZ_CP031890|CRISPRCasFinder	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	100.000	34	0	0	1	34	1376190	1376157	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	4.63e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1376157-1376190	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	4.1|887198|34|NZ_CP031890|CRISPRCasFinder	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	100.000	34	0	0	1	34	1465349	1465382	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	4.63e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1465349-1465382	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	5.1|950014|26|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	96.154	26	1	0	1	26	949958	949983	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.37e-05	39.6	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	949958-949983	CGGGGCCCCAACACAGAGGCTGGTGG	1
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	5.1|950014|26|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	92.308	26	2	0	1	26	2823303	2823278	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.23e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2823278-2823303	CCGCCAGCTTCTATGTTGGGGCCCCG	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	5.1|950014|26|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	92.308	26	2	0	1	26	2823359	2823334	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.23e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	2823334-2823359	CCGCCAGCTTCTTTGTTGGGGCCCCG	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	5.1|950014|26|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	92.308	26	2	0	1	26	806812	806837	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.23e-04	36.5	1.0	CGGGGCCCCAACACAGAGGCTGGCGG	806812-806837	CGGGGCCCCAACACAGAAGCAGGCGG	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	5.3|950128|26|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	96.154	26	1	0	1	26	843956	843931	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.37e-05	39.6	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	843931-843956	TCGTCAGCTTCTGTGTTGGGGCCCCG	1
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	5.3|950128|26|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	92.308	26	2	0	1	26	394259	394284	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.23e-04	36.5	1.0	CGGGGCCCCAACACAGAAGCTGGCGA	394259-394284	CGGGGCCCCAACAAAGAAGCTGACGA	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	7.1|2025354|33|NZ_CP031890|CRISPRCasFinder	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	96.970	33	1	0	1	33	843911	843943	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.09e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	843911-843943	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	7.1|2025354|33|NZ_CP031890|CRISPRCasFinder	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	96.970	33	1	0	1	33	1690271	1690303	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.09e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1690271-1690303	CATTATAGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	7.1|2025354|33|NZ_CP031890|CRISPRCasFinder	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	96.970	33	1	0	1	33	2659965	2659997	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.09e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	2659965-2659997	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	7.1|2025354|33|NZ_CP031890|CRISPRCasFinder	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	96.970	33	1	0	1	33	1168019	1167987	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.09e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1167987-1168019	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	7.1|2025354|33|NZ_CP031890|CRISPRCasFinder	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	96.970	33	1	0	1	33	1376144	1376112	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	1.09e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1376112-1376144	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	7.1|2025354|33|NZ_CP031890|CRISPRCasFinder	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	93.939	33	2	0	1	33	1465395	1465427	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	9.84e-08	47.5	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1465395-1465427	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	9.1|2384028|33|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	93.939	33	2	0	1	33	843911	843943	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	9.84e-08	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	843911-843943	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	9.1|2384028|33|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	93.939	33	2	0	1	33	1465395	1465427	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	9.84e-08	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1465395-1465427	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	9.1|2384028|33|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	93.939	33	2	0	1	33	2659965	2659997	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	9.84e-08	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	2659965-2659997	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	9.1|2384028|33|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	93.939	33	2	0	1	33	1168019	1167987	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	9.84e-08	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1167987-1168019	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	9.1|2384028|33|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	93.939	33	2	0	1	33	1376144	1376112	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	9.84e-08	47.5	1.0	CATTATTGTATGCTGACTTTTCGTCACCTTCTG	1376112-1376144	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	9.2|2384084|36|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	100.000	36	0	0	1	36	1167966	1167931	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	5.78e-11	58.6	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1167931-1167966	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA	0
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	9.2|2384084|36|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	97.222	36	1	0	1	36	1868768	1868733	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	5.20e-10	55.5	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1868733-1868768	TAGAGAATTTCGAAAAGAAATTCTACAGACAATGCA	1
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	9.2|2384084|36|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	94.444	36	2	0	1	36	1690210	1690245	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	4.68e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	1690210-1690245	TGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTA	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	9.2|2384084|36|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	94.444	36	2	0	1	36	2036098	2036133	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	4.68e-09	52.3	1.0	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA	2036098-2036133	TGCATTGTCTGTAGAATTTCCTTTCGAAATTCTCTA	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	9.3|2384143|33|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	93.939	33	2	0	1	33	843911	843943	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	9.84e-08	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	843911-843943	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	9.3|2384143|33|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	93.939	33	2	0	1	33	2659965	2659997	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	9.84e-08	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	2659965-2659997	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	9.3|2384143|33|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	93.939	33	2	0	1	33	1168019	1167987	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	9.84e-08	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1167987-1168019	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP031890	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	9.3|2384143|33|NZ_CP031890|CRT	NZ_CP031890.1	Staphylococcus aureus strain CFSAN082781 chromosome, complete genome	93.939	33	2	0	1	33	1376144	1376112	432926-433026|668055-668147|843845-843930|887174-887255|949984-950266|1083656-1083743|2025331-2025409|2260087-2260237|2384005-2384198	9.84e-08	47.5	1.0	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG	1376112-1376144	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	2
