The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP032155	Mycobacterium sp. ELW1 chromosome, complete genome	6245979	1350414	1378849	6245979	transposase	Staphylococcus_prophage(33.33%)	16	NA	NA
WP_149383373.1|1350414_1351440_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	31.7	3.1e-31
WP_149378328.1|1352184_1353282_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_149378329.1|1353533_1353833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149378330.1|1353829_1354327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149378331.1|1354818_1356012_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_149383374.1|1356369_1356969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149378332.1|1356965_1358945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149378333.1|1358987_1361042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149383375.1|1361296_1361929_+|transposase	TnsA-like heteromeric transposase endonuclease subunit	transposase	NA	NA	NA	NA
WP_168214792.1|1365128_1366793_+	TniQ family protein	NA	NA	NA	NA	NA
WP_149378335.1|1367143_1367809_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_149378336.1|1368254_1369649_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.1	7.7e-33
WP_149378337.1|1370790_1371927_+	TniQ family protein	NA	NA	NA	NA	NA
WP_149378338.1|1372298_1373354_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_149378340.1|1375691_1377047_+|transposase	IS256 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	26.4	8.9e-34
WP_149383376.1|1377790_1378849_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP032155	Mycobacterium sp. ELW1 chromosome, complete genome	6245979	4207839	4216554	6245979		Bacillus_phage(33.33%)	10	NA	NA
WP_149380530.1|4207839_4210008_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.0	2.2e-207
WP_149380531.1|4209974_4210457_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A217ER62	Bacillus_phage	28.7	1.6e-06
WP_102808938.1|4210485_4210725_-	redoxin NrdH	NA	V5UN81	Mycobacterium_phage	62.7	1.7e-20
WP_149380532.1|4211172_4211715_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	35.7	2.3e-09
WP_149380533.1|4211802_4212405_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_149380534.1|4212401_4213454_+	DNA polymerase IV	NA	I6RSM4	Salmonella_phage	26.1	3.0e-13
WP_149380535.1|4213495_4214335_-	NmrA family NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_149380536.1|4214331_4214757_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_149380537.1|4214854_4215484_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_149380538.1|4215693_4216554_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	34.4	2.9e-06
>prophage 3
NZ_CP032155	Mycobacterium sp. ELW1 chromosome, complete genome	6245979	5466325	5523698	6245979	transposase,holin,protease,tRNA	uncultured_Mediterranean_phage(25.0%)	51	NA	NA
WP_149382532.1|5466325_5468656_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5ESM9	Bathycoccus_sp._RCC1105_virus	41.7	1.0e-106
WP_168214974.1|5468830_5469730_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_149382534.1|5469726_5470908_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_149382536.1|5470949_5471723_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_149382538.1|5471759_5472479_+	SIMPL domain-containing protein	NA	NA	NA	NA	NA
WP_149381284.1|5472475_5473465_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_168214975.1|5473730_5474342_-	hypoxanthine phosphoribosyltransferase	NA	A0A1V0SEQ1	Hokovirus	27.3	1.7e-08
WP_149382542.1|5474338_5475313_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_168215117.1|5475291_5476347_-|protease	zinc-dependent metalloprotease	protease	NA	NA	NA	NA
WP_149382546.1|5476334_5477717_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_149382548.1|5477881_5478370_+	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	48.4	2.3e-32
WP_149382550.1|5478453_5478990_+	2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase	NA	NA	NA	NA	NA
WP_168214976.1|5478999_5479962_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_149382552.1|5480881_5481490_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_149382554.1|5481520_5482213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149383750.1|5482277_5483324_+	allantoicase	NA	NA	NA	NA	NA
WP_149382556.1|5483320_5484238_+	allantoinase PuuE	NA	NA	NA	NA	NA
WP_149382558.1|5484207_5484936_-	Asp/Glu racemase	NA	NA	NA	NA	NA
WP_149382560.1|5484932_5486483_-	NCS1 family nucleobase:cation symporter-1	NA	NA	NA	NA	NA
WP_149382563.1|5486536_5487256_-	FCD domain-containing protein	NA	NA	NA	NA	NA
WP_149382565.1|5487310_5487682_-	STAS/SEC14 domain-containing protein	NA	NA	NA	NA	NA
WP_149382567.1|5487707_5488118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149382569.1|5488199_5489168_-	TerC/Alx family metal homeostasis membrane protein	NA	I7HPH5	Enterobacteria_phage	33.0	1.0e-36
WP_149382571.1|5489378_5493314_+	amino acid adenylation domain-containing protein	NA	A0A2K9L3I8	Tupanvirus	25.5	1.8e-39
WP_149382573.1|5493310_5494648_+	M1 family metallopeptidase	NA	NA	NA	NA	NA
WP_149383751.1|5494674_5495931_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149383752.1|5495956_5496658_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_149382574.1|5496654_5496993_+	DUF2304 family protein	NA	NA	NA	NA	NA
WP_149382576.1|5496989_5497922_-	NAD-dependent epimerase/dehydratase family protein	NA	L7RCI0	Acanthamoeba_polyphaga_moumouvirus	32.6	3.1e-38
WP_149382578.1|5497960_5499751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149382580.1|5500484_5501699_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_149382582.1|5501792_5503394_+	HAMP domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	30.2	4.7e-18
WP_149382584.1|5503390_5506195_-	type I DNA topoisomerase	NA	A0A2K9L5F8	Tupanvirus	31.0	2.8e-98
WP_149382586.1|5506308_5506887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005138711.1|5507043_5507247_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	54.7	3.4e-14
WP_149382588.1|5507536_5509864_+	DUF1998 domain-containing protein	NA	A0A1B1IUF6	uncultured_Mediterranean_phage	27.3	1.6e-06
WP_149382590.1|5510173_5511199_+	DUF5593 domain-containg protein	NA	NA	NA	NA	NA
WP_149382592.1|5511217_5511586_-	flp pilus-assembly TadE/G-like family protein	NA	NA	NA	NA	NA
WP_149382594.1|5511554_5511845_-	pilus biosynthesis protein TadE	NA	NA	NA	NA	NA
WP_149383753.1|5511880_5512048_-	DUF4244 domain-containing protein	NA	NA	NA	NA	NA
WP_149383754.1|5512106_5512661_-	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_149383755.1|5512672_5513443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149382596.1|5513448_5514612_-	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA	NA
WP_149382598.1|5514608_5515676_-	helicase	NA	NA	NA	NA	NA
WP_149383756.1|5516125_5516950_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_149382600.1|5517322_5518069_-	oxidoreductase	NA	NA	NA	NA	NA
WP_149382602.1|5518182_5520156_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	39.6	2.7e-84
WP_149383757.1|5520157_5520823_-|protease	serine protease	protease	NA	NA	NA	NA
WP_149382604.1|5521037_5521550_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_149383758.1|5521549_5522518_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_149382606.1|5522510_5523698_-|protease	acid resistance serine protease MarP	protease	A0A1B1IRH0	uncultured_Mediterranean_phage	25.1	9.9e-05
>prophage 1
NZ_CP032156	Mycobacterium sp. ELW1 plasmid pELW1-1, complete sequence	221756	52163	115428	221756	transposase,integrase	Gordonia_phage(14.29%)	53	99664:99679	121941:121956
WP_149382636.1|52163_53231_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A142KCU7	Gordonia_phage	26.0	3.1e-05
WP_067393169.1|53227_53542_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_149382634.1|53567_55208_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_149383877.1|55936_57298_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	U5N3F9	Enterobacteria_phage	25.3	5.6e-20
WP_149383990.1|59054_60572_+	isoprene monooxygenase oxygenase subunit alpha	NA	NA	NA	NA	NA
WP_149383878.1|60617_60896_+	toluene monooxygenase	NA	NA	NA	NA	NA
WP_149383879.1|60888_61230_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_149383880.1|61245_61572_+	monooxygenase	NA	NA	NA	NA	NA
WP_149383881.1|61575_62598_+	toluene hydroxylase	NA	NA	NA	NA	NA
WP_149383882.1|62612_63635_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_149383883.1|63668_65009_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_149383884.1|65124_66762_+	GMC family oxidoreductase	NA	NA	NA	NA	NA
WP_149383885.1|66797_67250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149383886.1|67309_68764_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_149383887.1|69000_69912_+	alpha/beta fold hydrolase	NA	R9RXH6	Mycobacterium_phage	27.8	2.0e-05
WP_149383888.1|71681_72710_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_149383889.1|72709_73045_-	monooxygenase	NA	NA	NA	NA	NA
WP_149383890.1|73054_74155_-	monooxygenase	NA	NA	NA	NA	NA
WP_149383891.1|74154_75696_-	monooxygenase	NA	NA	NA	NA	NA
WP_149383992.1|75954_76530_+	response regulator	NA	NA	NA	NA	NA
WP_149383991.1|76501_77608_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_149383892.1|79167_80037_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_149383893.1|80041_81259_+	MCE family protein	NA	NA	NA	NA	NA
WP_149383894.1|81255_82296_+	MCE family protein	NA	NA	NA	NA	NA
WP_149383895.1|82292_83735_+	MCE family protein	NA	NA	NA	NA	NA
WP_149383896.1|83731_85351_+	MCE family protein	NA	NA	NA	NA	NA
WP_149383993.1|85395_86550_+	MCE family protein	NA	NA	NA	NA	NA
WP_149383897.1|86553_88095_+	MCE family protein	NA	NA	NA	NA	NA
WP_149383994.1|88145_88613_+	Mce protein	NA	NA	NA	NA	NA
WP_149383898.1|89594_90179_+	mammalian cell entry protein	NA	NA	NA	NA	NA
WP_149383899.1|90145_90778_+	mammalian cell entry protein	NA	NA	NA	NA	NA
WP_149383900.1|90801_92376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149383995.1|92435_93194_+	evbL	NA	NA	NA	NA	NA
WP_149383901.1|93615_93813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149383902.1|93820_95224_-	recombinase XerD	NA	NA	NA	NA	NA
WP_149383903.1|95300_95648_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_149383996.1|95644_96784_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K2CP59	Brevibacillus_phage	24.6	5.0e-06
WP_149383904.1|97367_97907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149383997.1|97989_98673_+	hypothetical protein	NA	NA	NA	NA	NA
99664:99679	attL	ACGTCGCGGGTGAAGG	NA	NA	NA	NA
WP_149383906.1|100044_100533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149383907.1|100574_100871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149383908.1|100995_101229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149383909.1|102914_104939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149383910.1|105099_105591_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_149383911.1|105642_106614_-	DUF4226 domain-containing protein	NA	NA	NA	NA	NA
WP_149383912.1|106742_108371_+	protein kinase	NA	A0A1B1IUU3	uncultured_Mediterranean_phage	28.3	8.5e-15
WP_149383913.1|108417_108714_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_149383914.1|108710_108962_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_149383915.1|109462_110398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_168215133.1|110472_110619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149383916.1|110942_111917_-	hypothetical protein	NA	A0A1P8D5M4	Corynebacterium_phage	29.2	8.1e-21
WP_149383917.1|112171_113149_-|transposase	IS481 family transposase	transposase	A0A0M3LS26	Mannheimia_phage	32.4	2.4e-09
WP_014805453.1|113988_115428_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
121941:121956	attR	ACGTCGCGGGTGAAGG	NA	NA	NA	NA
