The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP031886	Staphylococcus aureus strain CFSAN082783 chromosome, complete genome	2749000	717098	724917	2749000		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|717098_718154_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|718153_718840_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|718814_719288_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093554.1|719628_720069_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|720348_720933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062976.1|721031_721745_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|721748_722168_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446726.1|722169_722838_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.4e-66
WP_000604517.1|723188_723782_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	8.9e-39
WP_001217805.1|723765_724917_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NZ_CP031886	Staphylococcus aureus strain CFSAN082783 chromosome, complete genome	2749000	736888	751164	2749000		uncultured_Caudovirales_phage(50.0%)	15	NA	NA
WP_000663021.1|736888_737947_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	2.6e-20
WP_000197263.1|738104_738653_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429016.1|739340_740258_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_031785486.1|740348_740450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193753.1|740527_742033_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.6e-58
WP_072468887.1|742110_742302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000930014.1|742373_742874_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|742893_743760_-	DMT family transporter	NA	NA	NA	NA	NA
WP_001793674.1|744144_744294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000692521.1|744561_744960_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|744922_747028_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562500.1|747145_748117_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	3.2e-171
WP_000876313.1|748491_749463_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.9	1.0e-140
WP_001245581.1|749449_750406_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616861.1|750402_751164_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	2.7e-16
>prophage 3
NZ_CP031886	Staphylococcus aureus strain CFSAN082783 chromosome, complete genome	2749000	992744	1001217	2749000		Synechococcus_phage(33.33%)	9	NA	NA
WP_001622461.1|992744_993227_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010404.1|993213_994338_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174048.1|994341_995046_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	4.0e-46
WP_000848350.1|995045_995309_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666803.1|995310_995982_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032752.1|995974_998164_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483713.1|998142_999627_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030827.1|999619_1000648_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	1.2e-62
WP_000238657.1|1000650_1001217_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	8.0e-29
>prophage 4
NZ_CP031886	Staphylococcus aureus strain CFSAN082783 chromosome, complete genome	2749000	1256584	1271093	2749000	portal,integrase,head,terminase	Staphylococcus_phage(57.14%)	24	1250407:1250424	1274897:1274914
1250407:1250424	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_000146714.1|1256584_1257292_-|integrase	tyrosine-type recombinase/integrase	integrase	V9QKF1	Oenococcus_phage	26.2	4.7e-10
WP_001183752.1|1257344_1258040_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.9	1.4e-06
WP_000554409.1|1258051_1258435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001083979.1|1258581_1258947_-	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	47.9	1.8e-21
WP_000842950.1|1259108_1259345_+	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	82.4	7.4e-29
WP_000789021.1|1259369_1259651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072840.1|1259821_1259983_+	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000786995.1|1260069_1260387_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
WP_000786635.1|1260376_1260643_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.9e-18
WP_001004328.1|1260647_1261184_+	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	81.4	1.1e-75
WP_000818736.1|1261184_1261964_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.8	9.3e-129
WP_076679818.1|1262044_1262539_+	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	94.0	9.9e-84
WP_000929467.1|1262552_1263491_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	48.1	4.8e-47
WP_000945229.1|1263491_1263782_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	5.5e-18
WP_000714365.1|1263796_1263955_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	7.9e-19
WP_000185174.1|1264263_1264794_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	8.0e-23
WP_025174108.1|1264935_1265043_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	84.4	1.4e-06
WP_000835356.1|1265039_1265504_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.7	2.5e-20
WP_000602001.1|1265504_1265738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000653928.1|1265780_1266269_+	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	27.7	1.9e-07
WP_000090969.1|1266420_1266849_+	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000207539.1|1266835_1268110_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	1.2e-194
WP_000158571.1|1268122_1269571_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.4	2.8e-195
WP_149558608.1|1270100_1271093_+|head	head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	70.4	5.3e-52
1274897:1274914	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 5
NZ_CP031886	Staphylococcus aureus strain CFSAN082783 chromosome, complete genome	2749000	1543792	1552104	2749000	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1543792_1544578_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1544703_1545594_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062177.1|1545603_1546950_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683915.1|1547063_1548164_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_000624564.1|1548166_1548844_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1548974_1550081_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_149558561.1|1550304_1552104_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	1.7e-53
>prophage 6
NZ_CP031886	Staphylococcus aureus strain CFSAN082783 chromosome, complete genome	2749000	1621474	1630518	2749000	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1621474_1621993_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594988.1|1622014_1624288_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	7.3e-65
WP_000749795.1|1624491_1626771_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1627045_1627306_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1627324_1628464_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019180.1|1628486_1629512_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005764.1|1629513_1630518_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
NZ_CP031886	Staphylococcus aureus strain CFSAN082783 chromosome, complete genome	2749000	1753462	1799732	2749000	transposase,tRNA,protease	Staphylococcus_phage(91.43%)	42	NA	NA
WP_001050528.1|1753462_1760020_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	87.6	2.3e-292
WP_000836464.1|1760344_1760656_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	97.1	6.9e-51
WP_001108717.1|1760677_1763092_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
WP_001025064.1|1763383_1764565_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526542.1|1764674_1765628_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764418.1|1765624_1766188_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	4.1e-102
WP_000757543.1|1766304_1766706_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1767276_1768104_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1768106_1768226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1768337_1769339_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1769460_1769925_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159030.1|1769937_1771119_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493880.1|1771129_1771762_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	97.6	2.1e-110
WP_029549219.1|1771768_1772800_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	1.2e-195
WP_001261688.1|1773293_1774796_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221174.1|1775438_1775753_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	1.8e-51
WP_000989113.1|1775752_1777045_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.9	3.0e-217
WP_001032834.1|1777131_1777986_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1778260_1778485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671060.1|1778683_1779154_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	85.2	3.8e-69
WP_001152694.1|1779266_1779710_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030473.1|1779696_1780140_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.1e-49
WP_000492904.1|1781238_1781859_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1782535_1783249_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|1783507_1783810_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200545.1|1784065_1784431_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	6.2e-59
WP_149558569.1|1784427_1784781_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	90.6	7.9e-19
WP_000453324.1|1785030_1785864_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
WP_000366165.1|1786075_1786984_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933821.1|1787108_1788302_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109912.1|1788673_1790266_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001827685.1|1790645_1791392_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	6.6e-140
WP_000672013.1|1791396_1791870_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718111.1|1791935_1792193_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	97.6	1.0e-44
WP_000778530.1|1792189_1793191_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	3.1e-185
WP_000348383.1|1793195_1794674_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.1	1.0e-277
WP_072468941.1|1794832_1795288_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.3e-79
WP_001796416.1|1795590_1796241_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	70.4	1.3e-30
WP_000070666.1|1796321_1797317_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	1.9e-73
WP_000669031.1|1797392_1798019_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	3.9e-85
WP_000627532.1|1798059_1798401_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	91.2	4.8e-53
WP_149558570.1|1798602_1799732_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.0	2.0e-79
>prophage 8
NZ_CP031886	Staphylococcus aureus strain CFSAN082783 chromosome, complete genome	2749000	1839409	1912397	2749000	plate,head,holin,capsid,portal,integrase,terminase,tail,tRNA	Staphylococcus_phage(71.43%)	91	1897541:1897557	1916438:1916454
WP_000181394.1|1839409_1839880_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001796463.1|1839884_1841027_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_001144055.1|1841162_1841891_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_000649917.1|1841877_1843335_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063547.1|1843593_1844655_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000110011.1|1853305_1853752_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000869466.1|1853848_1854799_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000939524.1|1854804_1855260_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_001011611.1|1855340_1856630_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001796444.1|1856922_1858017_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000597236.1|1858207_1859944_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.3e-53
WP_000251252.1|1860233_1860776_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000284741.1|1861078_1862116_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379095.1|1862267_1863245_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_031785518.1|1863348_1863579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000886472.1|1863505_1864342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000535840.1|1864350_1865868_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000435806.1|1865882_1866197_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124427.1|1866174_1866993_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000830380.1|1867253_1868063_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_000163283.1|1868404_1868920_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005407.1|1869053_1869215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100250272.1|1869561_1869642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000382163.1|1869967_1870168_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000139423.1|1870154_1870265_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|1870335_1870488_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_149558574.1|1870730_1872176_-	CHAP domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	99.4	3.4e-294
WP_000354129.1|1872156_1872594_-|holin	phage holin	holin	A7YGY0	Staphylococcus_virus	97.9	5.9e-72
WP_000398864.1|1872649_1873045_-	hypothetical protein	NA	A9CRD5	Staphylococcus_phage	99.2	4.7e-68
WP_000276656.1|1873050_1874223_-|plate	BppU family phage baseplate upper protein	plate	A0A2I6PCW8	Staphylococcus_phage	100.0	2.2e-198
WP_000524041.1|1874235_1876110_-	CHAP domain-containing protein	NA	Q4ZB20	Staphylococcus_virus	100.0	0.0e+00
WP_000466784.1|1876246_1876546_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_001800921.1|1876586_1876760_-	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
WP_000406973.1|1876769_1877147_-	DUF2977 domain-containing protein	NA	Q4ZB23	Staphylococcus_virus	100.0	5.3e-61
WP_000259622.1|1877146_1878970_-|plate	BppU family phage baseplate upper protein	plate	Q4ZDD5	Staphylococcus_virus	95.9	5.3e-284
WP_000323268.1|1878969_1880868_-	hypothetical protein	NA	Q4ZB26	Staphylococcus_virus	98.4	0.0e+00
WP_149558575.1|1880880_1882767_-	peptidase	NA	A1KXA8	Staphylococcus_virus	99.7	0.0e+00
WP_149558576.1|1882777_1883719_-|tail	phage tail protein	tail	Q4ZBQ4	Staphylococcus_phage	98.7	9.1e-179
WP_000379439.1|1883733_1886877_-	hypothetical protein	NA	A0A059T7Q4	Staphylococcus_phage	93.8	0.0e+00
WP_000880588.1|1886880_1887165_-	hypothetical protein	NA	A0A0E3TAI0	Staphylococcus_phage	98.9	1.5e-44
WP_000134337.1|1887209_1887716_-	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_000057582.1|1887781_1888339_-|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_000270188.1|1888339_1888765_-	DUF3168 domain-containing protein	NA	A0A0E3XBP2	Staphylococcus_phage	99.3	3.6e-74
WP_001151323.1|1888777_1889185_-	HK97 gp10 family phage protein	NA	A0A0E3T8J0	Staphylococcus_phage	100.0	3.4e-74
WP_000483041.1|1889171_1889507_-|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
WP_000177351.1|1889518_1889869_-|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	100.0	1.9e-60
WP_000235168.1|1890029_1890944_-|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_001019221.1|1890960_1891545_-	DUF4355 domain-containing protein	NA	A0A2H4JDY6	uncultured_Caudovirales_phage	100.0	7.3e-78
WP_000346033.1|1891647_1891854_-	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	100.0	3.2e-28
WP_000184131.1|1891855_1892809_-	hypothetical protein	NA	A0A0N7E0U6	Staphylococcus_phage	99.4	6.6e-177
WP_000177426.1|1892777_1894202_-|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	100.0	4.8e-272
WP_001037584.1|1894198_1895422_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0H3U2R6	Staphylococcus_phage	99.5	6.4e-241
WP_000594088.1|1895414_1895909_-|terminase	terminase	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_025174416.1|1896079_1896334_+	hypothetical protein	NA	Q4ZB48	Staphylococcus_virus	78.6	1.1e-19
WP_000286968.1|1896263_1896665_-	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_001826585.1|1896665_1896839_-	transcriptional activator RinB	NA	Q4ZA36	Staphylococcus_virus	93.0	5.4e-21
WP_001798107.1|1896838_1897231_-	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	98.5	3.1e-64
WP_000483477.1|1897214_1897451_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_000195781.1|1897475_1897712_-	DUF1381 domain-containing protein	NA	M1T303	Staphylococcus_phage	96.2	5.3e-35
1897541:1897557	attL	AATTATTAGTGTAGTAA	NA	NA	NA	NA
WP_001209219.1|1897728_1897902_-	hypothetical protein	NA	S4SVD5	Staphylococcus_phage	100.0	3.6e-25
WP_000181819.1|1897938_1898472_-	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_000700108.1|1898464_1898707_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_001065103.1|1898696_1898933_-	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	98.7	1.2e-34
WP_001793991.1|1898925_1899297_-	hypothetical protein	NA	A0ZS31	Staphylococcus_virus	96.7	3.6e-62
WP_001126836.1|1899305_1899554_-	hypothetical protein	NA	A0A2I6PDI0	Staphylococcus_phage	100.0	3.2e-43
WP_000029379.1|1899554_1899914_-	hypothetical protein	NA	Q8SDV7	Staphylococcus_phage	98.3	3.8e-61
WP_000772916.1|1899925_1900183_-	helix-turn-helix transcriptional regulator	NA	Q4ZBU1	Staphylococcus_virus	100.0	4.1e-41
WP_001187263.1|1900183_1900369_-	DUF3113 family protein	NA	Q8SDV9	Staphylococcus_phage	100.0	2.4e-27
WP_000049812.1|1900378_1900783_-	DUF1064 domain-containing protein	NA	A0A059T5A5	Staphylococcus_phage	97.0	3.5e-71
WP_001123688.1|1900793_1901015_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000803056.1|1901182_1901962_-	ATP-binding protein	NA	Q9G022	Staphylococcus_virus	100.0	2.4e-145
WP_000139436.1|1901972_1902716_-	alpha/beta hydrolase	NA	A0A2I6PDA9	Staphylococcus_phage	99.6	2.5e-115
WP_000240900.1|1902708_1903473_-	AP2 domain-containing protein	NA	A0A2I6PDA5	Staphylococcus_phage	98.4	5.0e-143
WP_001121805.1|1903472_1904141_-	hypothetical protein	NA	Q4ZD97	Staphylococcus_virus	98.2	1.1e-125
WP_000934782.1|1904154_1904583_-	single-stranded DNA-binding protein	NA	A0A0E3XC62	Staphylococcus_phage	90.8	1.7e-63
WP_000139720.1|1904582_1905206_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_001077280.1|1905198_1905420_-	DUF2483 family protein	NA	A0A0E3TAJ7	Staphylococcus_phage	100.0	2.4e-34
WP_000291090.1|1905429_1905690_-	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_000066011.1|1905786_1905948_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000594789.1|1905940_1906162_-	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
WP_000395455.1|1906232_1906463_+	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_001148589.1|1906638_1907379_-	antirepressor	NA	A0A1W6JPN2	Staphylococcus_phage	100.0	6.3e-135
WP_000933365.1|1907380_1907566_-	helix-turn-helix transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	100.0	1.3e-25
WP_000394410.1|1908011_1908494_+	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
WP_000438352.1|1908594_1908774_-	hypothetical protein	NA	A0A0N9BAV3	Staphylococcus_phage	100.0	1.7e-25
WP_103263741.1|1908792_1909023_-	helix-turn-helix domain-containing protein	NA	A0A0N9BAY2	Staphylococcus_phage	90.7	9.1e-32
WP_000333630.1|1909174_1909489_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_000525004.1|1909501_1909963_+	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_000392183.1|1910146_1911079_+	hypothetical protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
WP_000337827.1|1911058_1911238_-	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_001145722.1|1911350_1912397_+|integrase	site-specific integrase	integrase	Q4ZB10	Staphylococcus_virus	100.0	5.5e-201
1916438:1916454	attR	TTACTACACTAATAATT	NA	NA	NA	NA
>prophage 9
NZ_CP031886	Staphylococcus aureus strain CFSAN082783 chromosome, complete genome	2749000	1936355	2030116	2749000	tRNA,transposase,head,holin,capsid,protease,portal,terminase,integrase,tail	Staphylococcus_phage(85.71%)	112	1995742:1995759	2021314:2021331
WP_000170162.1|1936355_1936658_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957019.1|1937024_1938563_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|1938651_1939851_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774563.1|1939863_1941867_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	7.5e-114
WP_000992924.1|1941870_1944063_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272062.1|1944059_1944752_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1944923_1945226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1945334_1946630_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827739.1|1947476_1948643_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434537.1|1948673_1949000_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669865.1|1949290_1949464_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1949444_1950047_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000164017.1|1950317_1951139_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	4.4e-68
WP_000284429.1|1951131_1952601_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.3	2.5e-106
WP_000898869.1|1952784_1953861_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177820.1|1953880_1954675_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_031785526.1|1954746_1954854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|1954864_1956427_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_149558578.1|1956631_1957729_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.3	2.8e-46
WP_000149686.1|1958100_1958661_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1958713_1959643_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|1959835_1960009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021226.1|1960060_1961440_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181320.1|1961559_1962588_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205103.1|1962857_1963259_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	1.3e-22
WP_000267034.1|1963315_1963489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188080.1|1963939_1964980_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
WP_000713063.1|1965036_1965879_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033966.1|1965875_1966433_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966286.1|1966492_1967017_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1967137_1967701_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221648.1|1967766_1968507_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|1968506_1969379_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645721.1|1969375_1970056_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991300.1|1970056_1970953_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|1970949_1971330_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681966.1|1971587_1971764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1972005_1972104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068518.1|1972303_1973590_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000669710.1|1973860_1975930_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|1976887_1977067_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001795394.1|1977090_1977399_+	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	2.1e-39
WP_001791826.1|1977377_1977638_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1977690_1978041_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|1978724_1979174_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|1979268_1979727_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000919350.1|1980253_1980745_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|1980935_1981691_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1981702_1981957_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|1982008_1982116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|1982168_1982345_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|1982494_1982791_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|1982848_1983136_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|1983182_1983335_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|1983324_1987110_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567408.1|1987125_1988610_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001796452.1|1988606_1993136_-|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.8	0.0e+00
WP_001096355.1|1993380_1993731_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1993780_1994005_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268733.1|1994046_1994691_-|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
WP_000565498.1|1994691_1995099_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114227.1|1995095_1995500_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_094969815.1|1995496_1995859_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	99.2	1.7e-64
1995742:1995759	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|1995842_1996127_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238237.1|1996139_1996400_-	hypothetical protein	NA	A0A0H3U504	Staphylococcus_phage	100.0	6.4e-42
WP_000154559.1|1996419_1997565_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|1997588_1998326_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|1998309_1999497_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|1999512_2001174_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2001170_2001515_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2001645_2001945_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2002176_2002593_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001622114.1|2002620_2002821_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000595265.1|2002820_2002970_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2002966_2003353_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2003349_2003556_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2003552_2003798_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_149558570.1|2004034_2005163_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.0	2.0e-79
WP_001065097.1|2005746_2006001_-	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_000131370.1|2006015_2006258_-	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_000101288.1|2006261_2006630_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401960.1|2006642_2007047_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000338530.1|2007055_2007274_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000610648.1|2008204_2008675_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
WP_073394849.1|2008675_2009293_-	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
WP_000138475.1|2009373_2010294_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700555.1|2010295_2012239_-	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|2012247_2012511_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|2012519_2012780_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|2012784_2013087_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|2013181_2013343_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|2013339_2013663_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762519.1|2013717_2014098_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
WP_001148862.1|2014084_2014282_-	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_001148605.1|2014297_2015050_-	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128907.1|2015100_2015430_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001025404.1|2015418_2015634_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854074.1|2015630_2015912_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	96.5	4.6e-38
WP_001801500.1|2015908_2016082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2016044_2016758_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2016773_2017706_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2017711_2018053_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705248.1|2018256_2018439_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|2018538_2019003_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000857191.1|2019061_2020099_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000595616.1|2021236_2022256_-	beta-channel forming cytolysin	NA	A0A2I6PEU3	Staphylococcus_phage	39.8	2.6e-54
2021314:2021331	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791399.1|2022277_2023333_-	succinyl-diaminopimelate desuccinylase	NA	A0A2I6PER8	Staphylococcus_phage	34.6	6.0e-38
WP_149558579.1|2023763_2024987_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045070.1|2025382_2026690_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240642.1|2027221_2028838_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2028913_2029198_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197627.1|2029372_2030116_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 1
NZ_CP031887	Staphylococcus aureus strain CFSAN082783 plasmid pMRSA_24, complete sequence	59051	0	36047	59051	integrase,transposase,tRNA	Staphylococcus_phage(57.89%)	39	14719:14736	24167:24184
WP_000790712.1|517_1960_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_000690638.1|1931_2525_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	1.5e-41
WP_000182645.1|2788_3169_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096381.1|3158_4916_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_149558609.1|5022_5868_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.4	8.8e-32
WP_000418035.1|6393_6813_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000481279.1|6936_7908_+	oxidoreductase	NA	NA	NA	NA	NA
WP_001791613.1|8079_8172_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000119690.1|8328_8676_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	36.8	4.9e-13
WP_000616816.1|8694_9312_-	cadmium resistance transporter CadD	NA	NA	NA	NA	NA
WP_001004925.1|10427_10622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000691527.1|10731_11424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002505617.1|12068_13988_+	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_002505618.1|14415_14622_+	hypothetical protein	NA	NA	NA	NA	NA
14719:14736	attL	TGGTTCTGTTGCAAAGTT	NA	NA	NA	NA
WP_149558614.1|15009_15756_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_000163435.1|15782_18857_+|tRNA	mupirocin-resistant isoleucine--tRNA ligase MupA	tRNA	A0A2I2L3Y0	Orpheovirus	31.0	4.5e-150
WP_000282188.1|18926_19814_+	phosphotransferase	NA	NA	NA	NA	NA
WP_002487656.1|19824_20988_+	MFS transporter	NA	NA	NA	NA	NA
WP_012816694.1|21061_21211_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A0N9RU54	Staphylococcus_phage	62.8	2.9e-07
WP_002440499.1|21165_21393_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_002440503.1|22932_23124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000493114.1|23654_23750_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001105960.1|24223_24898_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	1.7e-126
24167:24184	attR	TGGTTCTGTTGCAAAGTT	NA	NA	NA	NA
WP_149558615.1|25240_25438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149558610.1|25405_26065_-	RibD family protein	NA	A0A1B0RXM8	Streptococcus_phage	99.5	5.3e-125
WP_072387101.1|26175_26583_-	WYL domain-containing protein	NA	A0A1B0RXM3	Streptococcus_phage	98.3	1.1e-59
WP_149558616.1|26555_26816_-	WYL domain-containing protein	NA	E4ZFP5	Streptococcus_phage	91.9	2.1e-37
WP_001106022.1|26847_27522_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	100.0	6.2e-129
WP_001118605.1|27553_27976_-	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	100.0	1.0e-68
WP_000175735.1|27985_28471_-	trimethoprim-resistant dihydrofolate reductase DfrC	NA	A0A0N9S8H6	Staphylococcus_phage	100.0	1.1e-90
WP_000282655.1|28512_29469_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	100.0	1.1e-190
WP_001105984.1|29582_30257_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	3.8e-126
WP_049330258.1|30748_31141_+	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	99.2	4.5e-71
WP_001028144.1|31141_32581_+	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
WP_149558611.1|33153_33819_-|transposase	IS6-like element IS257-2 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	91.5	2.3e-107
WP_000889978.1|33983_34079_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001106006.1|34349_35024_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	97.3	2.2e-126
WP_149558612.1|35047_35209_+	HAD hydrolase family protein	NA	NA	NA	NA	NA
WP_002485543.1|35534_36047_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	67.4	4.1e-40
>prophage 2
NZ_CP031887	Staphylococcus aureus strain CFSAN082783 plasmid pMRSA_24, complete sequence	59051	53105	53732	59051		Bacillus_virus(100.0%)	1	NA	NA
WP_000593103.1|53105_53732_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	8.0e-22
>prophage 3
NZ_CP031887	Staphylococcus aureus strain CFSAN082783 plasmid pMRSA_24, complete sequence	59051	56740	58757	59051		Staphylococcus_phage(100.0%)	3	NA	NA
WP_000358995.1|56740_57136_-	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
WP_000153631.1|57153_58443_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.6	2.3e-188
WP_000120603.1|58442_58757_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	3.6e-39
