assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008330965.1_ASM833096v1	NZ_CP043500	Xanthomonas translucens pv. undulosa strain P3 chromosome, complete genome	1	526229-529221	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL,DEDDh,csa3,Cas9_archaeal	 Type I-U?,Type I-U,Type I-C	GTTTCAATCCACGCGCCCGTGAGGACGCGAC,GTTTCAATCCACGCGCCCGTGAGGACGCGAC,GTTTCAATCCACGCGCCCGTGAGGACGCGAC	31,31,31	0	0	NA	NA	I-C:I-C:I-C	45,45,43	45	TypeI-U,TypeI-U?,TypeI-C	cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL,DEDDh,csa3,Cas9_archaeal	NA|181aa|up_8|NZ_CP043500.1_509504_510047_+,NA|675aa|up_6|NZ_CP043500.1_512021_514046_-,NA	NA|256aa|up_9|NZ_CP043500.1_508528_509296_+	cd07515, HAD-like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|181aa|up_8|NZ_CP043500.1_509504_510047_+	NA	NA|454aa|up_7|NZ_CP043500.1_510460_511822_+	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ	NA|675aa|up_6|NZ_CP043500.1_512021_514046_-	NA	NA|1041aa|up_5|NZ_CP043500.1_514758_517881_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|1074aa|up_4|NZ_CP043500.1_518122_521344_-	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA|414aa|up_3|NZ_CP043500.1_521494_522736_-	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|273aa|up_2|NZ_CP043500.1_524294_525113_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|98aa|up_1|NZ_CP043500.1_525218_525512_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|170aa|up_0|NZ_CP043500.1_525570_526080_+	COG4314, NosL, Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]	cas2|97aa|down_0|NZ_CP043500.1_529411_529702_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|345aa|down_1|NZ_CP043500.1_529717_530752_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|211aa|down_2|NZ_CP043500.1_530754_531387_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|293aa|down_3|NZ_CP043500.1_531409_532288_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|615aa|down_4|NZ_CP043500.1_532284_534129_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|225aa|down_5|NZ_CP043500.1_534125_534800_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|765aa|down_6|NZ_CP043500.1_534886_537181_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|744aa|down_7|NZ_CP043500.1_537810_540042_+	pfam03971, IDH, Monomeric isocitrate dehydrogenase	NA|444aa|down_8|NZ_CP043500.1_540132_541464_-	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]	NA|797aa|down_9|NZ_CP043500.1_541438_543829_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel
GCF_008330965.1_ASM833096v1	NZ_CP043500	Xanthomonas translucens pv. undulosa strain P3 chromosome, complete genome	2	800072-800174	2	CRISPRCasFinder	no		cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL,DEDDh,csa3,Cas9_archaeal	Orphan	CAGTGACCGGCGCCGATGGCAGA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL,DEDDh,csa3,Cas9_archaeal	NA,NA	NA|201aa|up_9|NZ_CP043500.1_791943_792546_-	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|201aa|up_8|NZ_CP043500.1_792734_793337_+	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|238aa|up_7|NZ_CP043500.1_793428_794142_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|427aa|up_6|NZ_CP043500.1_794249_795530_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|236aa|up_5|NZ_CP043500.1_795574_796282_-	cd04502, SGNH_hydrolase_like_7, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|127aa|up_4|NZ_CP043500.1_796475_796856_+	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase	NA|250aa|up_3|NZ_CP043500.1_796896_797646_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|213aa|up_2|NZ_CP043500.1_797722_798361_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|315aa|up_1|NZ_CP043500.1_798548_799493_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|164aa|up_0|NZ_CP043500.1_799492_799984_+	COG3762, COG3762, Predicted membrane protein [Function unknown]	NA|294aa|down_0|NZ_CP043500.1_800209_801091_+	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|265aa|down_1|NZ_CP043500.1_801087_801882_+	PRK01827, thyA, thymidylate synthase; Reviewed	NA|167aa|down_2|NZ_CP043500.1_801989_802490_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|310aa|down_3|NZ_CP043500.1_802608_803538_-	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA|128aa|down_4|NZ_CP043500.1_803548_803932_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|265aa|down_5|NZ_CP043500.1_804147_804942_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|326aa|down_6|NZ_CP043500.1_805051_806029_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|460aa|down_7|NZ_CP043500.1_806032_807412_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|782aa|down_8|NZ_CP043500.1_807408_809754_-	PRK04423, PRK04423, LPS-assembly protein LptD	NA|302aa|down_9|NZ_CP043500.1_809863_810769_-	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII
GCF_008330965.1_ASM833096v1	NZ_CP043500	Xanthomonas translucens pv. undulosa strain P3 chromosome, complete genome	3	2588582-2588725	3	CRISPRCasFinder	no		cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL,DEDDh,csa3,Cas9_archaeal	Orphan	CTCGGTGCTCAGACCATGATCGTGCTTCAGCCGCGGCAGCAG	42	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL,DEDDh,csa3,Cas9_archaeal	NA|165aa|up_2|NZ_CP043500.1_2586222_2586717_+,NA|236aa|up_0|NZ_CP043500.1_2587568_2588276_-,NA	NA|300aa|up_9|NZ_CP043500.1_2580447_2581347_+	pfam05035, DGOK, 2-keto-3-deoxy-galactonokinase	NA|108aa|up_8|NZ_CP043500.1_2581429_2581753_+	pfam11953, DUF3470, Domain of unknown function (DUF3470)	NA|178aa|up_7|NZ_CP043500.1_2582008_2582542_-	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]	NA|303aa|up_6|NZ_CP043500.1_2582559_2583468_-	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|192aa|up_5|NZ_CP043500.1_2583624_2584200_+	COG2716, GcvR, Glycine cleavage system regulatory protein [Amino acid transport and metabolism]	NA|160aa|up_4|NZ_CP043500.1_2584261_2584741_+	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|467aa|up_3|NZ_CP043500.1_2584825_2586226_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]	NA|165aa|up_2|NZ_CP043500.1_2586222_2586717_+	NA	NA|223aa|up_1|NZ_CP043500.1_2586786_2587455_+	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|236aa|up_0|NZ_CP043500.1_2587568_2588276_-	NA	NA|268aa|down_0|NZ_CP043500.1_2589377_2590181_+	pfam02281, Dimer_Tnp_Tn5, Transposase Tn5 dimerization domain	NA|270aa|down_1|NZ_CP043500.1_2590320_2591130_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|330aa|down_2|NZ_CP043500.1_2591830_2592820_-	cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily	NA|307aa|down_3|NZ_CP043500.1_2592925_2593846_-	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|234aa|down_4|NZ_CP043500.1_2594013_2594715_+	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain	NA|713aa|down_5|NZ_CP043500.1_2595009_2597148_+	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|57aa|down_6|NZ_CP043500.1_2597735_2597906_+	pfam05532, CsbD, CsbD-like	NA|70aa|down_7|NZ_CP043500.1_2599232_2599442_-	PRK01712, PRK01712, carbon storage regulator CsrA	NA|883aa|down_8|NZ_CP043500.1_2599580_2602229_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|166aa|down_9|NZ_CP043500.1_2602335_2602833_-	PRK00117, recX, recombination regulator RecX; Reviewed
GCF_008330965.1_ASM833096v1	NZ_CP043500	Xanthomonas translucens pv. undulosa strain P3 chromosome, complete genome	4	2806670-2807652	4	CRISPRCasFinder	no		cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL,DEDDh,csa3,Cas9_archaeal	Orphan	GTGCTGCCGTAGCCGGCGGTCAA	23	9	28	2806693-2806717|2806741-2806765|2806837-2806861|2806837-2806861|2806837-2806861|2806837-2806861|2806837-2806861|2806885-2806909|2806933-2806957|2806933-2806957|2806933-2806957|2806981-2807005|2806981-2807005|2807077-2807101|2807077-2807101|2807077-2807101|2807125-2807149|2807125-2807149|2807125-2807149|2807125-2807149|2807125-2807149|2807125-2807149|2807125-2807149|2807269-2807293|2807269-2807293|2807269-2807293|2807269-2807293|2807269-2807293	NZ_CP043500.1_2806549-2806573|NZ_CP043500.1_2806453-2806477|NZ_CP043500.1_2805397-2805421|NZ_CP043500.1_2805829-2805853|NZ_CP043500.1_2805973-2805997|NZ_CP043500.1_2806261-2806285|NZ_CP043500.1_2805541-2805565|NZ_CP043500.1_2805877-2805901|NZ_CP043500.1_2805925-2805949|NZ_CP043500.1_2806069-2806093|NZ_CP043500.1_2806213-2806237|NZ_CP043500.1_2804965-2804989|NZ_CP043500.1_2805109-2805133|NZ_CP043500.1_2805205-2805229|NZ_CP043500.1_2805493-2805517|NZ_CP043500.1_2805637-2805661|NZ_CP043500.1_2805397-2805421|NZ_CP043500.1_2805829-2805853|NZ_CP043500.1_2805973-2805997|NZ_CP043500.1_2806261-2806285|NZ_CP043500.1_2805253-2805277|NZ_CP043500.1_2805541-2805565|NZ_CP043500.1_2805685-2805709|NZ_CP043500.1_2805397-2805421|NZ_CP043500.1_2805829-2805853|NZ_CP043500.1_2805973-2805997|NZ_CP043500.1_2806261-2806285|NZ_CP043500.1_2805541-2805565	NA	19	19	Orphan	cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL,DEDDh,csa3,Cas9_archaeal	NA|94aa|up_6|NZ_CP043500.1_2794694_2794976_-,NA|83aa|down_0|NZ_CP043500.1_2808944_2809193_-	NA|401aa|up_9|NZ_CP043500.1_2789053_2790256_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|375aa|up_8|NZ_CP043500.1_2791977_2793102_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold	NA|455aa|up_7|NZ_CP043500.1_2793200_2794565_-	PRK07480, PRK07480, putative aminotransferase; Validated	NA|94aa|up_6|NZ_CP043500.1_2794694_2794976_-	NA	NA|461aa|up_5|NZ_CP043500.1_2795284_2796667_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|252aa|up_4|NZ_CP043500.1_2796679_2797435_-	pfam07722, Peptidase_C26, Peptidase C26	NA|460aa|up_3|NZ_CP043500.1_2797694_2799074_+	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|400aa|up_2|NZ_CP043500.1_2799308_2800508_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|415aa|up_1|NZ_CP043500.1_2800653_2801898_+	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	NA|427aa|up_0|NZ_CP043500.1_2801913_2803194_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|83aa|down_0|NZ_CP043500.1_2808944_2809193_-	NA	NA|783aa|down_1|NZ_CP043500.1_2809182_2811531_-	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c	NA|280aa|down_2|NZ_CP043500.1_2811527_2812367_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|173aa|down_3|NZ_CP043500.1_2814214_2814733_+	pfam12727, PBP_like, PBP superfamily domain	NA|157aa|down_4|NZ_CP043500.1_2815896_2816367_+	pfam06718, DUF1203, Protein of unknown function (DUF1203)	NA|501aa|down_5|NZ_CP043500.1_2816719_2818222_-	cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like	NA|183aa|down_6|NZ_CP043500.1_2818310_2818859_-	PRK09943, PRK09943, HTH-type transcriptional regulator PuuR	NA|433aa|down_7|NZ_CP043500.1_2819201_2820500_+	PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional	NA|371aa|down_8|NZ_CP043500.1_2820565_2821678_+	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|498aa|down_9|NZ_CP043500.1_2821703_2823197_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2
GCF_008330965.1_ASM833096v1	NZ_CP043500	Xanthomonas translucens pv. undulosa strain P3 chromosome, complete genome	5	3839923-3840032	5	CRISPRCasFinder	no		cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL,DEDDh,csa3,Cas9_archaeal	Orphan	GTCGCGGCTGAAGCCGCTCCTACAG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL,DEDDh,csa3,Cas9_archaeal	NA|738aa|up_3|NZ_CP043500.1_3833784_3835998_-,NA|505aa|down_1|NZ_CP043500.1_3841006_3842521_-,NA|302aa|down_3|NZ_CP043500.1_3844408_3845314_-	NA|498aa|up_9|NZ_CP043500.1_3821678_3823172_+	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|554aa|up_8|NZ_CP043500.1_3823316_3824978_+	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|172aa|up_7|NZ_CP043500.1_3825162_3825678_-	PRK12846, PRK12846, peptide deformylase; Reviewed	NA|339aa|up_6|NZ_CP043500.1_3826064_3827081_+	pfam14488, DUF4434, Domain of unknown function (DUF4434)	NA|941aa|up_5|NZ_CP043500.1_3828814_3831637_-	pfam13283, NfrA_C, Bacteriophage N adsorption protein A C-term	NA|715aa|up_4|NZ_CP043500.1_3831633_3833778_-	PRK15489, nfrB, glycosyl transferase family protein	NA|738aa|up_3|NZ_CP043500.1_3833784_3835998_-	NA	NA|395aa|up_2|NZ_CP043500.1_3835994_3837179_-	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|250aa|up_1|NZ_CP043500.1_3837660_3838410_-	pfam05420, BCSC_C, Cellulose synthase operon protein C C-terminus (BCSC_C)	NA|394aa|up_0|NZ_CP043500.1_3838647_3839829_-	PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional	NA|322aa|down_0|NZ_CP043500.1_3840038_3841004_-	cd19608, GH113_mannanase-like, Glycoside hydrolase family 113 beta-1,4-mannanase and similar proteins	NA|505aa|down_1|NZ_CP043500.1_3841006_3842521_-	NA	NA|643aa|down_2|NZ_CP043500.1_3842468_3844397_-	cd06427, CESA_like_2, CESA_like_2 is a member of the cellulose synthase superfamily	NA|302aa|down_3|NZ_CP043500.1_3844408_3845314_-	NA	NA|282aa|down_4|NZ_CP043500.1_3845543_3846389_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|383aa|down_5|NZ_CP043500.1_3846759_3847908_+	cd05153, HomoserineK_II, Type II Homoserine Kinase	NA|721aa|down_6|NZ_CP043500.1_3848061_3850224_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|184aa|down_7|NZ_CP043500.1_3850518_3851070_+	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter	NA|246aa|down_8|NZ_CP043500.1_3851185_3851923_+	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR	NA|278aa|down_9|NZ_CP043500.1_3852225_3853059_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]
