The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP038102	Aeromonas salmonicida subsp. salmonicida strain SHY16-3432 chromosome, complete genome	4739953	578189	691015	4739953	portal,tail,head,transposase,integrase,terminase,tRNA,holin,capsid	Aeromonas_virus(66.0%)	115	599427:599444	670977:670994
WP_005315832.1|578189_579458_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A1S6UA79	Serratia_phage	42.5	1.5e-83
WP_005315828.1|579892_580561_-	GMP/IMP nucleotidase	NA	NA	NA	NA	NA
WP_085941659.1|580757_581318_+	ADP compounds hydrolase NudE	NA	NA	NA	NA	NA
WP_005315821.1|581359_582172_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA	NA
WP_005315817.1|582584_583856_+	septum formation initiator	NA	NA	NA	NA	NA
WP_005315814.1|583928_584267_-|tRNA	tRNA-binding protein	tRNA	NA	NA	NA	NA
WP_034283774.1|584351_585110_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005315809.1|585149_585473_-	met regulon transcriptional regulator MetJ	NA	NA	NA	NA	NA
WP_005315807.1|585768_586941_+	cystathionine gamma-synthase	NA	NA	NA	NA	NA
WP_005315804.1|586940_589394_+	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA	NA
WP_005315802.1|589480_590365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005315800.1|590442_591357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005315798.1|591415_592105_-	LrgB family protein	NA	NA	NA	NA	NA
WP_005315796.1|592097_592490_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005315794.1|593492_594371_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005315791.1|594480_595908_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005315789.1|596039_596528_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_005315786.1|596613_597051_+	rhodanese	NA	NA	NA	NA	NA
WP_005315783.1|597040_597781_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_005315779.1|597821_598295_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_005315776.1|598496_598988_+	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	49.7	2.6e-28
WP_005315774.1|599068_600130_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	64.7	8.6e-117
599427:599444	attL	CCGGTGAGCAGGCGCTGG	NA	NA	NA	NA
WP_005315770.1|600165_600675_+	regulatory protein RecX	NA	NA	NA	NA	NA
WP_005315766.1|601073_603698_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	37.9	9.6e-77
WP_005315763.1|603714_604962_+	aspartate kinase	NA	NA	NA	NA	NA
WP_005315760.1|605055_605244_+	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	66.7	5.0e-12
WP_011899145.1|606164_606992_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_005315753.1|607128_607794_-	DedA family protein	NA	NA	NA	NA	NA
WP_005315750.1|607812_609105_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_005315747.1|609289_612154_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.0	9.0e-137
WP_005315744.1|612219_612675_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_005315741.1|612849_614358_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	35.3	2.2e-49
WP_085941660.1|614536_615643_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
WP_005315733.1|615668_616739_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_085941523.1|616811_617456_-	RDD family protein	NA	NA	NA	NA	NA
WP_005322266.1|619448_619985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063975722.1|620010_621624_-	hypothetical protein	NA	A5X9J8	Aeromonas_virus	90.7	2.6e-290
WP_005321890.1|621620_622163_-	hypothetical protein	NA	A5X9J7	Aeromonas_virus	89.6	8.6e-81
WP_122066305.1|622159_623041_-	hypothetical protein	NA	A5X9J6	Aeromonas_virus	75.1	8.4e-118
WP_005321908.1|623037_623463_-|tail	tail protein	tail	A5X9J5	Aeromonas_virus	48.9	2.4e-30
WP_005321910.1|623478_625569_-|tail	phage tail protein	tail	A5X9J3	Aeromonas_virus	72.3	8.0e-292
WP_005321912.1|625565_626168_-	hypothetical protein	NA	A5X9J2	Aeromonas_virus	91.0	3.3e-105
WP_043149791.1|626160_627348_-	phage protein	NA	A5X9J1	Aeromonas_virus	90.7	9.7e-202
WP_043145185.1|627344_627668_-	DUF2590 family protein	NA	A5X9J0	Aeromonas_virus	94.4	4.2e-51
WP_005320282.1|627682_629734_-|tail	phage tail tape measure protein	tail	A5X9I9	Aeromonas_virus	63.7	6.7e-227
WP_005320284.1|629928_630192_-	hypothetical protein	NA	A5X9I7	Aeromonas_virus	66.7	7.2e-25
WP_005320288.1|630315_630750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005320289.1|630746_631208_-	glycoside hydrolase family 104 protein	NA	G0ZT35	Aeromonas_phage	83.7	3.0e-74
WP_043144985.1|631194_631521_-|holin	phage holin, lambda family	holin	A5X9I3	Aeromonas_virus	59.4	6.2e-26
WP_005322541.1|631544_631754_-	TraR/DksA family transcriptional regulator	NA	A5X9I2	Aeromonas_virus	79.7	1.8e-26
WP_011898576.1|631763_632219_-	DUF2597 family protein	NA	A5X9I1	Aeromonas_virus	90.7	7.7e-75
WP_043151478.1|632222_633359_-	DUF2586 family protein	NA	A5X9I0	Aeromonas_virus	87.6	1.3e-192
WP_005320300.1|633363_634050_-	phage virion morphogenesis protein	NA	A5X9H9	Aeromonas_virus	82.8	2.5e-101
WP_005320302.1|634052_634571_-	hypothetical protein	NA	A5X9H8	Aeromonas_virus	89.5	4.8e-89
WP_005320305.1|634567_635029_-|head	head completion/stabilization protein	head	A5X9H7	Aeromonas_virus	90.2	7.1e-68
WP_005320308.1|635144_635873_-|terminase	terminase endonuclease subunit	terminase	A5X9H6	Aeromonas_virus	95.0	2.1e-130
WP_011898578.1|635876_636929_-|capsid	phage major capsid protein, P2 family	capsid	A5X9H5	Aeromonas_virus	85.3	1.3e-170
WP_011898579.1|636938_637811_-|capsid	phage capsid protein	capsid	A5X9H4	Aeromonas_virus	69.2	6.4e-110
WP_005320318.1|637988_639809_+|terminase	terminase	terminase	A5X9H3	Aeromonas_virus	90.4	0.0e+00
WP_005320320.1|639805_640822_+|portal	phage portal protein	portal	A5X9H1	Aeromonas_virus	91.1	8.6e-183
WP_005320322.1|640887_641139_+	ogr/Delta-like zinc finger family protein	NA	A5X9H0	Aeromonas_virus	81.9	1.2e-34
WP_043144990.1|641199_642129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_157811037.1|642384_642486_-	DUF362 domain-containing protein	NA	NA	NA	NA	NA
WP_011899154.1|643369_644314_+	DUF2971 domain-containing protein	NA	NA	NA	NA	NA
WP_011899155.1|644458_644965_+	SLATT domain-containing protein	NA	NA	NA	NA	NA
WP_011899156.1|645326_646184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005320347.1|646186_646846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005320349.1|647102_647360_-	hypothetical protein	NA	A5X9G5	Aeromonas_virus	68.9	9.5e-22
WP_005320350.1|647361_649641_-	replication endonuclease	NA	A5X9G4	Aeromonas_virus	82.9	0.0e+00
WP_005320352.1|649637_649895_-	hypothetical protein	NA	A5X9G3	Aeromonas_virus	41.2	2.6e-11
WP_005320353.1|649891_650197_-	hypothetical protein	NA	A5X9G2	Aeromonas_virus	65.7	6.2e-28
WP_005320355.1|650193_650403_-	hypothetical protein	NA	A5X9G1	Aeromonas_virus	82.6	1.2e-22
WP_005320357.1|650473_650737_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005322225.1|650995_651448_-	hypothetical protein	NA	A5X9F8	Aeromonas_virus	81.2	1.3e-61
WP_043145224.1|651464_651974_-	phage protein	NA	A5X9F7	Aeromonas_virus	81.1	7.3e-74
WP_005320361.1|652000_652219_-	hypothetical protein	NA	A5X9F6	Aeromonas_virus	72.9	2.0e-20
WP_005320363.1|652366_653083_+	LexA family transcriptional regulator	NA	A5X9F5	Aeromonas_virus	84.5	7.3e-112
WP_005320365.1|653153_654215_+|integrase	site-specific integrase	integrase	A5X9F3	Aeromonas_virus	84.6	1.1e-172
WP_005320367.1|654600_655815_+|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	45.2	2.5e-88
WP_011898241.1|655994_657026_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011899113.1|657269_658043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005320380.1|658107_658362_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_005320382.1|658502_659369_+	phage repressor protein	NA	A0A0P0ZCA2	Stx2-converting_phage	36.0	3.8e-22
WP_073531771.1|659653_659860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005320383.1|659856_660216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005320385.1|660212_660467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011899110.1|660463_663268_+	DUF927 domain-containing protein	NA	A0A1B0VP75	Pseudomonas_phage	33.5	1.3e-66
WP_005320390.1|663661_665218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005320392.1|665466_665691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005320393.1|665739_666054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005320395.1|666081_666903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005320396.1|667657_668827_+	Fic family protein	NA	A0A1V0E025	Clostridioides_phage	27.4	8.5e-09
WP_005320398.1|669743_670676_+	ammonium transporter	NA	NA	NA	NA	NA
WP_005320400.1|670867_672220_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	42.9	1.5e-94
670977:670994	attR	CCGGTGAGCAGGCGCTGG	NA	NA	NA	NA
WP_073531772.1|672294_672849_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_011899104.1|672934_673117_+	DUF5363 family protein	NA	NA	NA	NA	NA
WP_005320404.1|673085_673697_-	type II secretion system protein	NA	A0A088F7U0	Vibrio_phage	50.0	8.7e-05
WP_005320406.1|673740_674529_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_005320408.1|674742_676017_+	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA	NA
WP_005320410.1|676140_676311_+	DUF1427 family protein	NA	R4TMJ4	Halovirus	60.0	6.3e-06
WP_005320412.1|676714_677488_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_005320414.1|677594_678926_+	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	38.8	1.7e-77
WP_005320416.1|678940_680149_+	phosphopentomutase	NA	NA	NA	NA	NA
WP_005320418.1|680226_680943_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_005320429.1|681016_681634_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_005320431.1|681753_682764_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_005320433.1|682818_683724_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_005320435.1|683770_686149_-	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_005320438.1|686249_687614_+	DNA repair protein RadA	NA	NA	NA	NA	NA
WP_005320440.1|687706_688087_-	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_005320446.1|688189_688672_-	Rsd/AlgQ family anti-sigma factor	NA	NA	NA	NA	NA
WP_005305063.1|688991_689264_+	DNA-binding protein HU-alpha	NA	A0A249Y2G7	Serratia_phage	44.2	3.6e-11
WP_005320448.1|689365_689791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005320449.1|689876_690026_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005320450.1|690028_691015_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
>prophage 2
NZ_CP038102	Aeromonas salmonicida subsp. salmonicida strain SHY16-3432 chromosome, complete genome	4739953	733670	741867	4739953		Stenotrophomonas_phage(16.67%)	6	NA	NA
WP_043144750.1|733670_734159_+	NUDIX domain-containing protein	NA	A0A142EZP1	Stenotrophomonas_phage	54.0	8.2e-06
WP_085941654.1|734216_735446_-	HAMP domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	29.6	3.5e-05
WP_005318613.1|735502_736183_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.9	9.0e-27
WP_005318615.1|736332_737487_+	efflux RND transporter periplasmic adaptor subunit	NA	A0A140XAI1	Dickeya_phage	71.9	6.8e-35
WP_005318617.1|737489_739439_+	MacB family efflux pump subunit	NA	G9BWD6	Planktothrix_phage	42.4	4.4e-42
WP_005318620.1|739719_741867_+	S9 family peptidase	NA	A0A1V0SHT0	Klosneuvirus	32.1	1.8e-65
>prophage 3
NZ_CP038102	Aeromonas salmonicida subsp. salmonicida strain SHY16-3432 chromosome, complete genome	4739953	860915	870839	4739953	tRNA	uncultured_Mediterranean_phage(25.0%)	10	NA	NA
WP_005318886.1|860915_861662_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.0	9.7e-67
WP_005318888.1|861666_862284_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.4	9.0e-34
WP_085941649.1|862286_862850_+	DedA family protein	NA	NA	NA	NA	NA
WP_005318892.1|862859_863906_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A0A7NU10	Lactobacillus_phage	41.3	7.9e-14
WP_005318894.1|863953_864937_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.1	1.7e-34
WP_005318896.1|865022_866036_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	58.0	1.5e-107
WP_005309452.1|866215_866431_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_005318899.1|866446_866890_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	47.9	1.3e-26
WP_005318901.1|866978_868766_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.1	3.4e-73
WP_073531780.1|868979_870839_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	32.6	1.1e-34
>prophage 4
NZ_CP038102	Aeromonas salmonicida subsp. salmonicida strain SHY16-3432 chromosome, complete genome	4739953	1298819	1354130	4739953	transposase,tRNA,integrase,capsid	Morganella_phage(16.67%)	49	1299897:1299956	1354094:1355257
WP_005312270.1|1298819_1299860_+|transposase	IS481-like element ISAs19 family transposase	transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	41.8	8.2e-72
1299897:1299956	attL	CTAAATAACTGATCCTAATAGTGCTACACCTTCGCTGTGCCATAGCCATTCCCGGGGAAA	NA	NA	NA	NA
WP_011898241.1|1299919_1300951_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_005312289.1|1301052_1301775_-|capsid	phage capsid scaffolding protein	capsid	A5X9H4	Aeromonas_virus	60.3	1.9e-43
WP_005312296.1|1302089_1302299_-	AlpA family transcriptional regulator	NA	A0A2H4J8C8	uncultured_Caudovirales_phage	53.8	3.0e-10
WP_080561587.1|1302636_1303350_-|integrase	site-specific integrase	integrase	A0A1W6JPG6	Morganella_phage	47.1	4.1e-54
WP_080561586.1|1303390_1303861_-	DUF4102 domain-containing protein	NA	A0A1W6JPG6	Morganella_phage	38.8	8.7e-13
WP_005312305.1|1303987_1307296_-	mechanosensitive channel MscK	NA	NA	NA	NA	NA
WP_011898977.1|1307443_1308856_-	pyruvate kinase PykF	NA	NA	NA	NA	NA
WP_005312324.1|1309159_1309384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005312327.1|1309461_1310643_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_005312329.1|1311051_1312395_-	cation:proton antiport protein	NA	NA	NA	NA	NA
WP_005312332.1|1312424_1312712_-	transporter	NA	NA	NA	NA	NA
WP_011898976.1|1313085_1314867_-	gamma-glutamyltransferase	NA	Q5GF27	Diachasmimorpha_longicaudata_entomopoxvirus	28.0	9.0e-10
WP_005312334.1|1315041_1315953_-	recombination-associated protein RdgC	NA	A0A1I9KF67	Aeromonas_phage	51.7	2.8e-84
WP_005312341.1|1316132_1316561_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_005312344.1|1316665_1317892_+	exonuclease subunit SbcD	NA	NA	NA	NA	NA
WP_005312346.1|1317888_1321641_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005312349.1|1321818_1322469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005312353.1|1322497_1323046_-	cytochrome b	NA	NA	NA	NA	NA
WP_005312357.1|1323283_1324102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005312360.1|1324164_1325127_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	33.3	1.8e-17
WP_005312365.1|1325215_1325725_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_005312368.1|1325768_1327496_-	phosphoenolpyruvate-protein phosphotransferase PtsI	NA	A0A1V0SGR7	Hokovirus	30.4	1.4e-15
WP_005303128.1|1327540_1327798_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_005312371.1|1328240_1329209_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	49.8	1.4e-68
WP_005312374.1|1329376_1330219_+	MoxR family ATPase	NA	NA	NA	NA	NA
WP_005312377.1|1330223_1331360_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_005312379.1|1331417_1332539_+	beta-ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_005312386.1|1332614_1333319_-|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
WP_005312388.1|1333554_1334532_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_005312389.1|1334589_1334976_-	DUF488 family protein	NA	NA	NA	NA	NA
WP_005312392.1|1334985_1335357_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_005312394.1|1335525_1337271_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	24.9	8.8e-18
WP_005312396.1|1337263_1339033_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.8	1.9e-15
WP_005312398.1|1339615_1340335_-	two-component system response regulator ArcA	NA	NA	NA	NA	NA
WP_005312400.1|1340711_1341128_+	DUF3293 domain-containing protein	NA	NA	NA	NA	NA
WP_005312402.1|1341170_1341650_+	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase	NA	NA	NA	NA	NA
WP_005312407.1|1341654_1342131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005312410.1|1342303_1342702_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_005312414.1|1342873_1344601_-	bifunctional isocitrate dehydrogenase kinase/phosphatase	NA	NA	NA	NA	NA
WP_005312418.1|1344867_1345560_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_011706817.1|1345613_1345697_+	thr operon leader peptide	NA	NA	NA	NA	NA
WP_005312421.1|1345810_1348303_+	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA	NA
WP_011898971.1|1348343_1349312_+	homoserine kinase	NA	NA	NA	NA	NA
WP_005312426.1|1349308_1350583_+	threonine synthase	NA	NA	NA	NA	NA
WP_011898241.1|1350944_1351976_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_129712454.1|1352096_1352588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_137736268.1|1352613_1352889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011898241.1|1353098_1354130_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
1354094:1355257	attR	TTTCCCCGGGAATGGCTATGGCACAGCGAAGGTGTAGCACTATTAGGATCAGTTATTTAGGCTCGTTATCTAAGTTTATTAAAATATCAATGCTGTTACATTCAGAAGCTATTTTTCTTTGGTATTTTTGTACAAAATGAGATAGCTCCTCTAATGGAGGTATATTCATGAGATTAAAAATCAAGCCTAACTGTTCTTTCCTTGTTTTTGGCTTTATGCTGGAGGGTATACGATCAAATGACTCAATCGATAAATTACAATCTTCTAGACATAATTTTTTGAAACAAATCTCAAAGTTTGACTCTAATAGTTCATCGCTAATGTCATACTTTTTAAGTAGTTTGTCAACCTCTGTGAAGTCTAAATTTTTTCCAGATGTCAACCATATGAAAAATGAATGTGGAGTGATTTCTATGAACCAATTAAAAGCATAAGTTTCATCTGGGAGGTATTTTTCATGCAGCCTATTTATAATGGTTCTCCATATGCTGCGATAGAAATGGTTCTTATCTGTTATTAAGATGTGGGAATTAATTGTAGCGTAGTTGTCTATAAACAAAGAAAGAGTATGATCTTGAAGATCATGATATGACCTATATTGAGATTTATGTATTGAATATTTTATTAATGATGAAAGAGCAGTATCGCTTATAATCTCATTAAAATCTAAATATTTATCCTTTTCTTTCATTGTTGACCCTGCGTTTAAAATATTGTAAATGTTTTTGTTTATATATTCCTAGCCAATTTATAGAGTCTAGTAACCTATTATTCCCGATCCGAGTCACTATTAATTGTCCAATCTGACTCTATCCATCCGGCGGCGATATGGCGATGAATGGAGGAGTAAGGCCAATCGACCGGTTTGTCACAATAACCATGTTTGACCGGATTGAAGTGGATGTAATCGACATGGGCTTGCAGATCCTTGTCATCCCGGATCAGATGTTCCCAATAACGTCGTTGCCAGATACCTCGTTCCCGTTTTCTGAGTCGGCTCTCCCGTATCCGCTCTGTTTTGGCAATGCCCCGTGAAAAGCCTGCCTTGATCAGAGACCAGCACATGGGATAGTCACTGTCACCCGGCGGTAGTTGCCATATGGCATGGAGATGATCCGGCATCACCACCATGGCAATAATCTCGAAGGGGTGTTGCTGTTTGAC	NA	NA	NA	NA
>prophage 5
NZ_CP038102	Aeromonas salmonicida subsp. salmonicida strain SHY16-3432 chromosome, complete genome	4739953	1771189	1802270	4739953		Aeromonas_phage(77.14%)	50	NA	NA
WP_005310158.1|1771189_1772443_-	DUF3596 domain-containing protein	NA	A0A1I9KF78	Aeromonas_phage	92.7	1.0e-225
WP_005310160.1|1772442_1772649_-	phage excisionase	NA	A0A1I9KF80	Aeromonas_phage	91.2	1.1e-31
WP_073545088.1|1772612_1773023_-	hypothetical protein	NA	A0A1I9KG69	Aeromonas_phage	89.0	2.8e-60
WP_005310165.1|1773349_1773949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005310167.1|1773945_1774251_-	DUF4406 domain-containing protein	NA	A0A1I9KFD3	Aeromonas_phage	91.3	2.6e-42
WP_005310169.1|1774267_1774918_-	ead/Ea22-like family protein	NA	NA	NA	NA	NA
WP_100224069.1|1774960_1775179_-	hypothetical protein	NA	A0A1I9KF77	Aeromonas_phage	90.1	6.6e-32
WP_043815643.1|1775165_1775774_-	hypothetical protein	NA	H9C0X8	Aeromonas_phage	51.0	3.1e-55
WP_005310173.1|1775845_1776457_-	hypothetical protein	NA	A0A1I9KF82	Aeromonas_phage	78.1	5.0e-53
WP_005310175.1|1776453_1776711_-	hypothetical protein	NA	R9VX58	Serratia_phage	58.6	4.6e-16
WP_005310177.1|1776707_1777619_-	recombination-associated protein RdgC	NA	A0A067ZG66	Vibrio_phage	54.4	1.5e-85
WP_005310179.1|1777641_1777821_-	hypothetical protein	NA	A0A1I9KFZ1	Aeromonas_phage	79.3	3.1e-19
WP_005310181.1|1777879_1778482_-	hypothetical protein	NA	H9C0R1	Aeromonas_phage	56.9	2.4e-63
WP_005310183.1|1778465_1778867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005310185.1|1778863_1780093_-	hypothetical protein	NA	A0A1I9KG78	Aeromonas_phage	39.1	7.0e-70
WP_005310188.1|1780139_1781282_-	hypothetical protein	NA	A0A1I9KFA0	Aeromonas_phage	78.2	2.3e-75
WP_005310190.1|1781338_1782322_-	phage recombination protein Bet	NA	A0A1I9KF88	Aeromonas_phage	85.2	4.0e-161
WP_005310192.1|1782318_1783164_-	exodeoxyribonuclease VIII	NA	A0A1I9KFF5	Aeromonas_phage	94.0	1.0e-160
WP_005310194.1|1783160_1783379_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005310196.1|1783375_1783771_-	hypothetical protein	NA	A0A1I9KF92	Aeromonas_phage	86.8	7.2e-61
WP_005310198.1|1783767_1784133_-	hypothetical protein	NA	A0A1I9KFC9	Aeromonas_phage	71.1	1.0e-40
WP_005310200.1|1784129_1784348_-	hypothetical protein	NA	H9C0R5	Aeromonas_phage	68.6	7.1e-18
WP_005310202.1|1784350_1784542_-	hypothetical protein	NA	A0A1I9KG01	Aeromonas_phage	88.7	4.6e-21
WP_005310204.1|1784565_1785042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005310206.1|1785038_1785626_-	hypothetical protein	NA	A0A0H3UCY1	Escherichia_phage	45.4	7.2e-41
WP_005310208.1|1786239_1786485_-	hypothetical protein	NA	A0A1I9KF98	Aeromonas_phage	81.5	5.0e-28
WP_005310210.1|1786993_1787647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050858088.1|1787662_1788361_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005310214.1|1788414_1788630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043815627.1|1788671_1789061_+	hypothetical protein	NA	A0A1I9KF96	Aeromonas_phage	96.6	7.3e-58
WP_005310218.1|1789064_1789283_+	hypothetical protein	NA	A0A1I9KFG0	Aeromonas_phage	97.2	2.1e-30
WP_005310223.1|1789481_1791086_+	DNA cytosine methyltransferase	NA	A0A1I9KFD6	Aeromonas_phage	79.1	2.5e-216
WP_005310225.1|1791082_1792117_+	hypothetical protein	NA	K7PLZ7	Enterobacterial_phage	42.9	4.1e-23
WP_005310227.1|1792154_1792583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005310229.1|1792585_1792888_+	hypothetical protein	NA	A0A1I9KFB1	Aeromonas_phage	75.0	1.5e-34
WP_005310230.1|1792971_1793253_+	hypothetical protein	NA	A0A1I9KG94	Aeromonas_phage	82.8	1.5e-36
WP_005310232.1|1793249_1793909_+	hypothetical protein	NA	H9C0X8	Aeromonas_phage	46.8	1.4e-45
WP_005310233.1|1793905_1794343_+	recombination protein NinB	NA	A0A1I9KFA6	Aeromonas_phage	91.0	9.1e-73
WP_005310235.1|1794339_1794657_+	hypothetical protein	NA	A0A1I9KFA7	Aeromonas_phage	89.5	3.9e-49
WP_005310237.1|1794653_1794893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043815629.1|1794889_1795312_+	hypothetical protein	NA	A0A1I9KG18	Aeromonas_phage	77.9	2.6e-61
WP_005310241.1|1795308_1795920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005310242.1|1796008_1796203_+	DUF3283 family protein	NA	NA	NA	NA	NA
WP_005310244.1|1796224_1796449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005310246.1|1796594_1796807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005310248.1|1796803_1797295_+	lysozyme	NA	A0A193GZ38	Enterobacter_phage	39.5	3.3e-15
WP_005310250.1|1797294_1797849_+	DUF2514 domain-containing protein	NA	A0A2D1GNE2	Pseudomonas_phage	48.6	2.4e-06
WP_005310252.1|1797930_1798518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005310254.1|1798507_1800061_+	hypothetical protein	NA	A0A096XUU0	Cronobacter_phage	37.2	1.6e-79
WP_080574150.1|1800245_1802270_+	hypothetical protein	NA	W8FP98	Vibrio_phage	28.0	5.7e-37
>prophage 6
NZ_CP038102	Aeromonas salmonicida subsp. salmonicida strain SHY16-3432 chromosome, complete genome	4739953	1971291	2042085	4739953	transposase,plate,tRNA	uncultured_Caudovirales_phage(37.5%)	52	NA	NA
WP_005310568.1|1971291_1972101_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_005310570.1|1972220_1973084_+	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA	NA
WP_005310572.1|1973098_1974346_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_042468689.1|1974546_1975317_+	cell division protein DedD	NA	NA	NA	NA	NA
WP_005310577.1|1975375_1975717_-	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA	NA
WP_011898839.1|1975743_1977897_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_011898838.1|1978061_1978718_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	53.1	4.0e-48
WP_005310581.1|1979210_1980773_+	methyl-accepting chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	45.3	5.6e-32
WP_011898835.1|1982583_1983243_+	TIGR01621 family pseudouridine synthase	NA	NA	NA	NA	NA
WP_005310586.1|1983260_1983893_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_005310588.1|1984151_1985264_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_005310590.1|1986421_1987420_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_085941473.1|1987460_1988138_+	maleylacetoacetate isomerase	NA	NA	NA	NA	NA
WP_005310593.1|1988221_1988845_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005310595.1|1988906_1989407_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_011898433.1|1990177_1991209_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_005310605.1|1991362_1992859_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_005310607.1|1992981_1994646_-	asparagine synthase B	NA	H8ZJK1	Ostreococcus_tauri_virus	40.8	1.3e-90
WP_005310609.1|1994839_1995208_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_005310611.1|1995297_1996917_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_005310613.1|1996937_1997687_-	HAD-IIA family hydrolase	NA	NA	NA	NA	NA
WP_005310615.1|1997906_1998926_+	adenosine deaminase	NA	NA	NA	NA	NA
WP_005310617.1|1999027_2000149_-	alkene reductase	NA	NA	NA	NA	NA
WP_005310619.1|2000325_2001867_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	41.8	2.2e-36
WP_085946273.1|2003142_2006334_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_005310623.1|2006333_2006822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005310625.1|2006926_2007388_+	hotdog fold thioesterase	NA	NA	NA	NA	NA
WP_005310627.1|2007569_2009411_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	36.4	2.6e-60
WP_011898829.1|2009745_2010228_+	molybdopterin-binding oxidoreductase	NA	NA	NA	NA	NA
WP_005310631.1|2010229_2012164_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA	NA
WP_005310633.1|2012283_2013606_-	Na+/H+ antiporter family protein	NA	NA	NA	NA	NA
WP_085941471.1|2013857_2014592_-	ribonuclease T	NA	NA	NA	NA	NA
WP_005310639.1|2014677_2016651_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.1	1.3e-33
WP_085941625.1|2016731_2017595_+	OmpA family protein	NA	NA	NA	NA	NA
WP_005310643.1|2017667_2018081_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_005310645.1|2018183_2018825_-	endonuclease III	NA	NA	NA	NA	NA
WP_005310647.1|2018843_2019602_-	electron transport complex subunit E	NA	NA	NA	NA	NA
WP_005310649.1|2019675_2020308_-	electron transport complex subunit RsxG	NA	NA	NA	NA	NA
WP_005310650.1|2020431_2021484_-	electron transport complex subunit RsxD	NA	NA	NA	NA	NA
WP_005310652.1|2021487_2023749_-	electron transport complex subunit RsxC	NA	NA	NA	NA	NA
WP_005310655.1|2023763_2024327_-	electron transport complex subunit RsxB	NA	NA	NA	NA	NA
WP_005310657.1|2024331_2024913_-	electron transport complex subunit RsxA	NA	NA	NA	NA	NA
WP_005310659.1|2025025_2025922_+	DMT family transporter	NA	NA	NA	NA	NA
WP_005310661.1|2026017_2026215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085941470.1|2027294_2028456_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	50.7	6.8e-83
WP_005310672.1|2028674_2029061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011898241.1|2029611_2030643_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_005310683.1|2032200_2033937_+	C4-dicarboxylic acid transporter DauA	NA	A0A2H4J153	uncultured_Caudovirales_phage	24.7	3.4e-30
WP_005310687.1|2036888_2037392_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_005310689.1|2038915_2039347_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_005310691.1|2039350_2041117_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_005310693.1|2041080_2042085_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
>prophage 7
NZ_CP038102	Aeromonas salmonicida subsp. salmonicida strain SHY16-3432 chromosome, complete genome	4739953	2057485	2067346	4739953	transposase,protease,tRNA	Yersinia_phage(14.29%)	12	NA	NA
WP_005310714.1|2057485_2057773_+	type VI secretion system PAAR protein	NA	G4KK81	Yersinia_phage	39.4	4.6e-09
WP_085941623.1|2058084_2058819_+|transposase	IS1-like element ISAs8 family transposase	transposase	A0A0U2RK18	Escherichia_phage	65.2	5.8e-80
WP_005310720.1|2058870_2059122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005310722.1|2059678_2060542_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	30.9	8.7e-27
WP_005300025.1|2060652_2060871_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	63.2	1.2e-17
WP_005310725.1|2061100_2061418_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	48.1	5.3e-14
WP_005310727.1|2061477_2063730_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	43.1	1.2e-168
WP_005300033.1|2063798_2064017_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005310729.1|2064085_2064802_-	arginyltransferase	NA	NA	NA	NA	NA
WP_005310730.1|2064798_2065506_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_005310731.1|2065525_2065996_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_005310733.1|2066098_2067346_-	response regulator	NA	A0A127AWB9	Bacillus_phage	32.2	2.9e-15
>prophage 8
NZ_CP038102	Aeromonas salmonicida subsp. salmonicida strain SHY16-3432 chromosome, complete genome	4739953	2941453	3023108	4739953	portal,tail,transposase,head,integrase,terminase,tRNA,holin,capsid	Aeromonas_virus(73.17%)	80	2990603:2990624	3026880:3026901
WP_011898241.1|2941453_2942485_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_050804903.1|2942623_2943712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042467990.1|2943778_2944945_-	DUF1615 domain-containing protein	NA	NA	NA	NA	NA
WP_005314639.1|2945161_2946820_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_005314637.1|2947352_2950577_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_005314635.1|2950593_2951745_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.9	1.4e-48
WP_005314633.1|2952421_2953234_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_005314627.1|2954858_2956193_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA	NA
WP_005314624.1|2956347_2956956_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_005314623.1|2957211_2957865_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_005314621.1|2958093_2959326_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	48.9	6.9e-110
WP_005314618.1|2959510_2959891_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_005314616.1|2960045_2961107_+	3-deoxy-7-phosphoheptulonate synthase	NA	S4VUY9	Pandoravirus	49.7	3.5e-86
WP_034282866.1|2961223_2961994_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	30.3	6.0e-11
WP_005314605.1|2962092_2963100_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA	NA
WP_005314604.1|2963203_2963935_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005314602.1|2964046_2964403_+	DMT family protein	NA	NA	NA	NA	NA
WP_011898593.1|2964462_2965602_+	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA	NA
WP_005314598.1|2965875_2967147_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
WP_085941590.1|2967280_2967772_+	WbuC family cupin fold metalloprotein	NA	NA	NA	NA	NA
WP_005314594.1|2967867_2968110_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005314592.1|2968106_2970377_-	Fe(2+) transporter permease subunit FeoB	NA	NA	NA	NA	NA
WP_005314583.1|2970373_2970601_-	ferrous iron transport protein A	NA	NA	NA	NA	NA
WP_085941442.1|2970675_2971050_+	stress response translation initiation inhibitor YciH	NA	NA	NA	NA	NA
WP_005314579.1|2971294_2971852_+	TMEM165/GDT1 family protein	NA	NA	NA	NA	NA
WP_005314578.1|2972104_2973043_+	DUF2157 domain-containing protein	NA	NA	NA	NA	NA
WP_005314577.1|2973079_2974087_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_005314576.1|2974083_2974587_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_034282846.1|2975522_2976269_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_005314572.1|2978197_2978506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005314566.1|2979525_2980584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005314565.1|2980713_2982189_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_011898465.1|2982745_2983777_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_005314540.1|2984013_2985390_-|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	33.5	8.7e-45
WP_005314539.1|2985581_2986079_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_005314538.1|2986068_2986779_+	DUF4269 domain-containing protein	NA	NA	NA	NA	NA
WP_011898588.1|2986775_2987540_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_005314534.1|2988003_2988180_+	DUF3606 domain-containing protein	NA	NA	NA	NA	NA
WP_005314532.1|2988333_2989107_-	glucose 1-dehydrogenase	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.1	4.6e-19
WP_005314529.1|2989214_2990183_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
2990603:2990624	attL	TGTCGCCACTCTGTCGCCACTT	NA	NA	NA	NA
WP_005314527.1|2990624_2990987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005314526.1|2991015_2992071_-|integrase	site-specific integrase	integrase	A5X9F3	Aeromonas_virus	58.5	1.0e-109
WP_011898587.1|2992281_2993934_-	DUF4041 domain-containing protein	NA	A0A142LP25	Marinitoga_camini_virus	59.0	2.5e-78
WP_005314514.1|2993960_2994644_-	helix-turn-helix domain-containing protein	NA	A0A1I9KG86	Aeromonas_phage	46.0	6.9e-43
WP_005314513.1|2994745_2994934_+	Cro/Cl family transcriptional regulator	NA	K7PHB1	Enterobacterial_phage	54.2	4.2e-11
WP_005314512.1|2994957_2995215_+	hypothetical protein	NA	Q1I116	Pasteurella_virus	45.0	1.6e-08
WP_011898586.1|2995219_2995741_+	hypothetical protein	NA	A5X9F7	Aeromonas_virus	67.6	7.3e-61
WP_005322225.1|2995757_2996210_+	hypothetical protein	NA	A5X9F8	Aeromonas_virus	81.2	1.3e-61
WP_005314506.1|2996468_2996732_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005314505.1|2996788_2996998_+	hypothetical protein	NA	A5X9G1	Aeromonas_virus	85.5	7.5e-25
WP_005314503.1|2996994_2997300_+	hypothetical protein	NA	A5X9G2	Aeromonas_virus	65.7	8.1e-28
WP_011898584.1|2997296_2997554_+	hypothetical protein	NA	A5X9G3	Aeromonas_virus	41.2	2.0e-11
WP_005314497.1|2997550_2999824_+	replication endonuclease	NA	A5X9G4	Aeromonas_virus	82.7	0.0e+00
WP_011898583.1|3000026_3000716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011898582.1|3000813_3001857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005314494.1|3001999_3002251_-	ogr/Delta-like zinc finger family protein	NA	A5X9H0	Aeromonas_virus	86.7	6.0e-37
WP_005314491.1|3002316_3003333_-|portal	phage portal protein	portal	A5X9H1	Aeromonas_virus	92.0	2.0e-184
WP_005314486.1|3003329_3005150_-|terminase	terminase	terminase	A5X9H3	Aeromonas_virus	90.9	0.0e+00
WP_100766247.1|3005403_3006180_+|capsid	capsid protein	capsid	A5X9H4	Aeromonas_virus	66.5	2.6e-91
WP_011898578.1|3006189_3007242_+|capsid	phage major capsid protein, P2 family	capsid	A5X9H5	Aeromonas_virus	85.3	1.3e-170
WP_005314473.1|3007245_3007974_+|terminase	terminase endonuclease subunit	terminase	A5X9H6	Aeromonas_virus	95.0	5.5e-131
WP_005314472.1|3008089_3008551_+|head	head completion/stabilization protein	head	A5X9H7	Aeromonas_virus	90.2	1.6e-67
WP_005314471.1|3008547_3009066_+	hypothetical protein	NA	A5X9H8	Aeromonas_virus	88.9	2.4e-88
WP_005314470.1|3009068_3009755_+	phage virion morphogenesis protein	NA	A5X9H9	Aeromonas_virus	83.3	3.8e-102
WP_011898577.1|3009759_3010896_+	DUF2586 family protein	NA	A5X9I0	Aeromonas_virus	86.8	4.3e-191
WP_011898576.1|3010899_3011355_+	DUF2597 family protein	NA	A5X9I1	Aeromonas_virus	90.7	7.7e-75
WP_005322541.1|3011364_3011574_+	TraR/DksA family transcriptional regulator	NA	A5X9I2	Aeromonas_virus	79.7	1.8e-26
WP_043144985.1|3011597_3011924_+|holin	phage holin, lambda family	holin	A5X9I3	Aeromonas_virus	59.4	6.2e-26
WP_005314461.1|3011910_3012372_+	glycoside hydrolase family 104 protein	NA	G0ZT35	Aeromonas_phage	83.0	3.6e-72
WP_005314459.1|3012368_3012803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005314455.1|3012926_3013190_+	hypothetical protein	NA	A5X9I7	Aeromonas_virus	65.5	9.4e-25
WP_005314454.1|3013384_3015436_+|tail	phage tail tape measure protein	tail	A5X9I9	Aeromonas_virus	64.4	3.6e-228
WP_081256753.1|3015435_3015774_+	DUF2590 family protein	NA	A5X9J0	Aeromonas_virus	95.3	2.6e-51
WP_043149318.1|3015770_3016958_+	phage protein	NA	A5X9J1	Aeromonas_virus	90.4	1.4e-200
WP_005321912.1|3016950_3017553_+	hypothetical protein	NA	A5X9J2	Aeromonas_virus	91.0	3.3e-105
WP_005321910.1|3017549_3019640_+|tail	phage tail protein	tail	A5X9J3	Aeromonas_virus	72.3	8.0e-292
WP_005321908.1|3019655_3020081_+|tail	tail protein	tail	A5X9J5	Aeromonas_virus	48.9	2.4e-30
WP_011898570.1|3020077_3020959_+	hypothetical protein	NA	A5X9J6	Aeromonas_virus	73.4	6.0e-116
WP_005321890.1|3020955_3021498_+	hypothetical protein	NA	A5X9J7	Aeromonas_virus	89.6	8.6e-81
WP_011898568.1|3021494_3023108_+	hypothetical protein	NA	A5X9J8	Aeromonas_virus	91.4	8.9e-291
3026880:3026901	attR	TGTCGCCACTCTGTCGCCACTT	NA	NA	NA	NA
>prophage 9
NZ_CP038102	Aeromonas salmonicida subsp. salmonicida strain SHY16-3432 chromosome, complete genome	4739953	4624583	4683521	4739953	transposase,integrase,protease	Indivirus(18.18%)	46	4642819:4642836	4685333:4685350
WP_005320658.1|4624583_4625417_+|protease	rhomboid family intramembrane serine protease GlpG	protease	NA	NA	NA	NA
WP_005320660.1|4625490_4627905_-	lipase	NA	NA	NA	NA	NA
WP_005320662.1|4628205_4628463_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005320664.1|4628632_4629331_-	NAD(P)H-flavin reductase	NA	NA	NA	NA	NA
WP_005320666.1|4629474_4630944_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_005320668.1|4630977_4631985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005320670.1|4632091_4633357_-	transcription termination factor Rho	NA	NA	NA	NA	NA
WP_005320671.1|4633563_4633890_-	thioredoxin TrxA	NA	A0A1V0SD63	Indivirus	42.3	3.0e-12
WP_011899248.1|4634003_4635293_+	ATP-dependent RNA helicase RhlB	NA	A0A1V0SBR7	Catovirus	26.4	1.4e-36
WP_005320675.1|4635306_4636797_+	guanosine-5'-triphosphate,3'-diphosphate diphosphatase	NA	NA	NA	NA	NA
WP_005320676.1|4636827_4637082_+	modulator protein	NA	NA	NA	NA	NA
WP_005320678.1|4637153_4637903_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005320680.1|4637980_4638721_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_011899249.1|4638728_4641275_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	31.7	1.2e-18
WP_005320684.1|4641480_4643523_-	oligopeptidase A	NA	A0A1V0SD92	Indivirus	20.7	6.9e-38
4642819:4642836	attL	CAGCTCGGCACGCAGCTC	NA	NA	NA	NA
WP_005320686.1|4643746_4644766_-	porphobilinogen synthase	NA	NA	NA	NA	NA
WP_005320698.1|4644769_4645555_-	DNase TatD	NA	NA	NA	NA	NA
WP_005320700.1|4645666_4646422_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	30.6	1.9e-25
WP_005320703.1|4646418_4646865_-	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA	NA
WP_005320705.1|4646868_4647114_-	twin-arginine translocase subunit TatA	NA	NA	NA	NA	NA
WP_005320707.1|4647227_4648868_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	A0A2P0VMP1	Tetraselmis_virus	23.4	1.7e-23
WP_011899251.1|4648867_4649476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005320731.1|4649484_4650237_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA	NA
WP_005320732.1|4650302_4650680_-	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	36.2	5.7e-07
WP_005321879.1|4658083_4659262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005321877.1|4659264_4659927_-	energy transducer TonB	NA	NA	NA	NA	NA
WP_005321875.1|4659923_4660325_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_005321870.1|4660321_4660852_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005321868.1|4660848_4662144_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_085941670.1|4662140_4662878_-	DUF3450 domain-containing protein	NA	NA	NA	NA	NA
WP_005321862.1|4663111_4663888_+	LuxR family transcriptional regulator	NA	A0A1I9KF49	Aeromonas_phage	42.2	1.2e-48
WP_005321859.1|4664112_4664589_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_073531812.1|4664875_4665094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011898241.1|4666663_4667695_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_080561591.1|4667817_4668438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005322068.1|4668475_4669231_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	51.0	4.4e-59
WP_005322071.1|4669245_4670787_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	47.6	2.6e-130
WP_080750975.1|4670978_4672073_+	type I restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_005319680.1|4672088_4673750_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005319675.1|4673746_4674610_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005319673.1|4674781_4676380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_073531818.1|4676379_4676874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085941388.1|4676970_4678121_-|transposase	IS3-like element ISAs5 family transposase	transposase	U5P429	Shigella_phage	65.9	4.6e-100
WP_005319662.1|4678181_4679123_-	transposon Tn7 transposition protein TnsD	NA	NA	NA	NA	NA
WP_005319660.1|4680796_4682881_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_005319658.1|4682864_4683521_-|transposase	heteromeric transposase endonuclease subunit TnsA	transposase	NA	NA	NA	NA
4685333:4685350	attR	CAGCTCGGCACGCAGCTC	NA	NA	NA	NA
>prophage 1
NZ_CP038103	Aeromonas salmonicida subsp. salmonicida strain SHY16-3432 plasmid pAsa5-3432, complete sequence	180043	4245	55706	180043	transposase	uncultured_virus(28.57%)	46	NA	NA
WP_011069623.1|4245_5460_-|transposase	IS256-like element ISAs3 family transposase	transposase	A0A218MNI5	uncultured_virus	47.3	2.8e-47
WP_011899420.1|5525_6788_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_005321603.1|6987_7413_-	chaperonin	NA	NA	NA	NA	NA
WP_005321607.1|7609_9001_+	T3SS effector protein-tyrosine-phosphatase AopH	NA	NA	NA	NA	NA
WP_011899421.1|9614_10646_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_005321623.1|11126_11660_+	YbjQ family protein	NA	M4STD1	Rhodobacter_phage	38.5	2.0e-13
WP_005321625.1|11656_11863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005321626.1|11994_12297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005321628.1|12319_12685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005322068.1|13662_14418_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	51.0	4.4e-59
WP_005322071.1|14432_15974_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	47.6	2.6e-130
WP_005320961.1|16592_17063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005320958.1|17977_18403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005320955.1|18704_18953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005320953.1|19062_19473_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_043149818.1|20205_21027_-	hypothetical protein	NA	A0A219YB24	Aeromonas_phage	28.2	2.4e-18
WP_005320938.1|21610_21847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005320936.1|22060_22690_+	AAA family ATPase	NA	A0A222YXS3	Escherichia_phage	64.8	1.5e-73
WP_005320934.1|22689_22995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_129712403.1|23259_23526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005320933.1|24036_24669_+	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_043144975.1|24901_25105_+	TraY domain-containing protein	NA	NA	NA	NA	NA
WP_100766242.1|25251_25506_+	TraA fimbrial protein precursor	NA	NA	NA	NA	NA
WP_011899425.1|25520_25829_+	type IV conjugative transfer system protein TraL	NA	NA	NA	NA	NA
WP_011899426.1|25831_26398_+	type IV conjugative transfer system protein TraE	NA	NA	NA	NA	NA
WP_011899427.1|26384_27113_+	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA	NA
WP_005320909.1|27099_28428_+	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_005320906.1|28439_28991_+	type IV conjugative transfer system lipoprotein TraV	NA	NA	NA	NA	NA
WP_005320903.1|29001_31587_+	type IV secretion system protein TraC	NA	NA	NA	NA	NA
WP_005320901.1|31652_32012_+	type-F conjugative transfer system protein TrbI	NA	NA	NA	NA	NA
WP_005320899.1|32008_32638_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA	NA
WP_005320898.1|32634_33624_+	conjugal transfer pilus assembly protein TraU	NA	NA	NA	NA	NA
WP_005320896.1|33633_34242_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA	NA
WP_011899430.1|36892_37231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011899431.1|37227_37764_+	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA	NA
WP_011899432.1|37750_39115_+	conjugal transfer protein TraH	NA	NA	NA	NA	NA
WP_063639068.1|39114_41958_+	conjugal transfer mating pair stabilization protein TraG	NA	NA	NA	NA	NA
WP_011899433.1|41954_42524_+	conjugal transfer entry exclusion protein TraS	NA	NA	NA	NA	NA
WP_005322181.1|42545_43280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011899434.1|43338_45501_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_011899435.1|45501_50664_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA	NA
WP_011069623.1|50776_51991_-|transposase	IS256-like element ISAs3 family transposase	transposase	A0A218MNI5	uncultured_virus	47.3	2.8e-47
WP_155268746.1|52216_52354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011899436.1|52453_53941_-	T3SS effector inositol phosphatase Ati2	NA	NA	NA	NA	NA
WP_005320818.1|53984_54434_-	Ati1 family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_011899437.1|54677_55706_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP038103	Aeromonas salmonicida subsp. salmonicida strain SHY16-3432 plasmid pAsa5-3432, complete sequence	180043	87634	118764	180043	transposase	Escherichia_phage(42.86%)	26	NA	NA
WP_011069623.1|87634_88849_-|transposase	IS256-like element ISAs3 family transposase	transposase	A0A218MNI5	uncultured_virus	47.3	2.8e-47
WP_005322068.1|88981_89737_-	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	51.0	4.4e-59
WP_005322071.1|89751_91293_-|transposase	IS21 family transposase	transposase	K4I413	Acidithiobacillus_phage	47.6	2.6e-130
WP_011899080.1|91744_92776_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_005321183.1|94990_95176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043145146.1|95316_95469_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA	NA
WP_005321180.1|95919_96360_+	molecular chaperone Tir	NA	NA	NA	NA	NA
WP_005321178.1|96366_98553_+	type III secretion system effector protein kinase AopO	NA	NA	NA	NA	NA
WP_005321162.1|103058_103568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005321160.1|103799_104078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005321158.1|104093_104426_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_005321147.1|104422_104704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_034283783.1|105002_105389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005321143.1|105677_106661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005321141.1|106831_107296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011899451.1|107261_107477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005321139.1|107727_108012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_137736249.1|108724_109741_+|transposase	IS5 family transposase	transposase	Q38213	Escherichia_phage	98.8	3.2e-185
WP_137736250.1|111127_111892_-|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.2	9.6e-86
WP_004152787.1|112275_112416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000376623.1|112398_112899_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000259031.1|113026_113866_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
WP_000679427.1|113859_114207_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
WP_001261740.1|114370_115162_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA	NA
WP_001931474.1|115279_116146_-	PSE family carbenicillin-hydrolyzing class A beta-lactamase CARB-2	NA	A0A077SL40	Escherichia_phage	44.1	4.8e-57
WP_001747814.1|117231_118764_+|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
