The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040232	Staphylococcus aureus strain GD1706 chromosome, complete genome	2876350	253569	364869	2876350	transposase,protease,holin	Staphylococcus_phage(17.86%)	99	NA	NA
WP_074347669.1|253569_254712_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000556258.1|255027_256440_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000215221.1|256700_257057_-	DUF488 domain-containing protein	NA	NA	NA	NA	NA
WP_000773985.1|257213_257387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000954803.1|257411_258557_-	nitric oxide dioxygenase	NA	NA	NA	NA	NA
WP_149888438.1|259129_260083_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_000838197.1|260403_261933_-	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	53.3	1.8e-11
WP_000823219.1|262294_263230_+	nucleoside hydrolase	NA	NA	NA	NA	NA
WP_001012740.1|263567_265664_+	transcription antiterminator	NA	NA	NA	NA	NA
WP_000531475.1|265648_266116_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_000815795.1|266138_266417_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_000120115.1|266643_267903_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_000646193.1|267920_268976_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_000230358.1|268977_269124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000645612.1|269147_270191_+	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.6	1.0e-13
WP_000638469.1|270718_271435_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000610172.1|271427_272453_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000167994.1|272474_274169_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_149888439.1|274299_274488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000598270.1|274896_276066_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_000872486.1|276341_277058_+	D-ribitol-5-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000610203.1|277050_278076_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000240920.1|278097_279786_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_000975356.1|279818_281540_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
WP_000608834.1|281683_282358_+	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000925394.1|282619_284359_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	1.5e-62
WP_000645457.1|284361_285102_+	DNA-binding response regulator	NA	NA	NA	NA	NA
WP_149888440.1|285214_285658_+|holin	antiholin-like murein hydrolase modulator LrgA	holin	NA	NA	NA	NA
WP_000607067.1|285650_286352_+|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
WP_000062646.1|286692_288984_+	nitric oxide reductase	NA	NA	NA	NA	NA
WP_000922329.1|289209_289914_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000066924.1|290062_290854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000164008.1|290869_292306_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.8	2.2e-30
WP_149888441.1|292458_292734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000031255.1|292993_293755_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000182750.1|294006_294921_-	ribokinase	NA	NA	NA	NA	NA
WP_149888442.1|294948_295353_-	D-ribose pyranase	NA	NA	NA	NA	NA
WP_000029208.1|295367_296249_-	ribose transporter RbsU	NA	NA	NA	NA	NA
WP_149888443.1|296480_297479_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001159764.1|297859_298252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105987.1|298635_299310_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
WP_012779615.1|299506_299569_+	tetracycline resistance efflux system leader peptide	NA	NA	NA	NA	NA
WP_001574277.1|299602_300979_+	tetracycline efflux MFS transporter Tet(L)	NA	NA	NA	NA	NA
WP_002348611.1|301027_301228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000119405.1|301545_302808_+	plasmid recombination protein	NA	NA	NA	NA	NA
WP_031886478.1|303052_304039_+	protein rep	NA	NA	NA	NA	NA
WP_001105987.1|304066_304741_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
WP_078099726.1|304756_305176_+	RepB family plasmid replication initiator protein	NA	NA	NA	NA	NA
WP_113525237.1|305321_305417_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_012655891.1|305813_306521_-	FAD-dependent thymidylate synthase	NA	M1IEJ2	Bacillus_phage	60.6	8.0e-79
WP_025906304.1|306517_307009_-	dihydrofolate reductase	NA	A0A076GDN3	Bacillus_phage	40.9	2.9e-27
WP_012655889.1|307092_307668_-	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	30.1	1.9e-14
WP_012655888.1|307994_308606_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	36.6	1.8e-18
WP_012655887.1|308633_308939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025906309.1|308960_309233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002354485.1|309310_309997_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_012655884.1|310309_311785_+	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	99.8	3.3e-284
WP_001814874.1|312157_312241_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_002292226.1|312365_313103_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_010722145.1|313107_313239_+	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	95.3	1.1e-15
WP_000576156.1|313457_314012_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	52.1	2.3e-36
WP_001240982.1|314015_316934_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.1	1.1e-169
WP_031886868.1|317240_320204_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	40.0	3.0e-212
WP_031886474.1|320481_321978_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_084567845.1|322243_322894_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.5	7.5e-124
WP_113525200.1|323261_324638_-	SLC45 family MFS transporter	NA	NA	NA	NA	NA
WP_031886459.1|325006_325615_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	33.5	6.8e-18
WP_031886460.1|325743_326322_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	4.2e-41
WP_031886461.1|326492_327827_-	persulfide dioxygenase-sulfurtransferase CstB	NA	NA	NA	NA	NA
WP_031886462.1|327854_328922_-	persulfide response sulfurtransferase CstA	NA	NA	NA	NA	NA
WP_019468539.1|329059_329320_+	persulfide-sensing transcriptional repressor CstR	NA	NA	NA	NA	NA
WP_031886463.1|329319_330075_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_049949216.1|330353_332093_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	77.9	1.8e-241
WP_049949217.1|332298_333468_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_001791613.1|333660_333753_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_031886465.1|333919_334267_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	40.0	1.6e-16
WP_113525202.1|334284_334914_-	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
WP_031886467.1|335013_335544_-	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	58.8	4.8e-52
WP_149888444.1|335679_335862_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031886468.1|336508_336634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031886469.1|338046_338913_-	replication initiator protein A	NA	NA	NA	NA	NA
WP_031886470.1|339352_340120_+	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_001105987.1|342386_343061_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.6	6.8e-128
WP_149888445.1|344539_345532_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000736798.1|345857_346808_+	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
WP_000570073.1|346859_347519_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.5	2.0e-23
WP_000806128.1|347532_348453_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_031886308.1|348449_349616_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000038540.1|349683_351207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000751205.1|351537_352431_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_001240826.1|352678_352972_+	WXG100 family type VII secretion effector EsxA	NA	NA	NA	NA	NA
WP_000728967.1|353054_356084_+	type VII secretion protein EsaA	NA	NA	NA	NA	NA
WP_000928933.1|356083_356542_+	type VII secretion protein EssA	NA	NA	NA	NA	NA
WP_011446982.1|356474_356756_+	type VII secretion protein EsaB	NA	NA	NA	NA	NA
WP_149888446.1|356768_358136_+	type VII secretion protein EssB	NA	NA	NA	NA	NA
WP_000549290.1|358123_362569_+	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	23.6	2.2e-28
WP_000503899.1|362580_362877_+	TIGR04197 family type VII secretion effector	NA	NA	NA	NA	NA
WP_000182268.1|362894_363290_+	DUF5082 family protein	NA	NA	NA	NA	NA
WP_000527012.1|363315_364869_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP040232	Staphylococcus aureus strain GD1706 chromosome, complete genome	2876350	392244	437627	2876350	integrase,capsid,head,transposase,tail,plate,holin,protease,portal,terminase	Staphylococcus_phage(92.19%)	65	392134:392151	438161:438178
392134:392151	attL	ATCTTACAAGGGTGGGAT	NA	NA	NA	NA
WP_031883891.1|392244_393450_-|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	99.8	1.1e-221
WP_001166482.1|393559_394183_+	hypothetical protein	NA	B7T0F3	Staphylococcus_virus	99.5	9.8e-105
WP_000449655.1|394380_394776_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_000755721.1|394804_395239_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
WP_031886309.1|395256_395718_-	toxin	NA	A0A2I6PEK4	Staphylococcus_phage	98.0	1.4e-84
WP_000429766.1|395730_396060_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_001115060.1|396220_396412_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_001025401.1|396500_396746_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001128433.1|396714_397080_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001036302.1|397134_397350_+	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	100.0	1.3e-32
WP_001124190.1|397374_397638_+	helix-turn-helix domain-containing protein	NA	A0A2I6PDM6	Staphylococcus_phage	100.0	1.1e-44
WP_001285963.1|397650_397812_+	DUF1270 family protein	NA	A0A2I6PEZ9	Staphylococcus_phage	100.0	5.0e-21
WP_000175000.1|397890_398214_+	hypothetical protein	NA	A0A2I6PDL5	Staphylococcus_phage	100.0	1.3e-52
WP_000279445.1|398228_398591_+	hypothetical protein	NA	A0A2K9VBV1	Staphylococcus_phage	100.0	6.4e-56
WP_000762532.1|398587_399754_+	DUF2800 domain-containing protein	NA	A0A2I6PDL4	Staphylococcus_phage	100.0	8.3e-222
WP_000645042.1|399779_400337_+	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_001796208.1|400405_402358_+	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
WP_001164628.1|402370_402556_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	98.4	2.1e-26
WP_000113981.1|402555_402957_+	PVL family protein	NA	A0A2I6PF14	Staphylococcus_phage	100.0	1.2e-68
WP_000111488.1|402956_403214_+	DUF3310 domain-containing protein	NA	A0A2I6PF10	Staphylococcus_phage	100.0	5.7e-43
WP_031796775.1|403216_403417_+	hypothetical protein	NA	A0A2I6PF32	Staphylococcus_phage	98.5	3.7e-29
WP_149888451.1|403425_403674_+	hypothetical protein	NA	A0A2I6PF06	Staphylococcus_phage	98.8	1.0e-41
WP_000693993.1|403688_403895_+	hypothetical protein	NA	A0A0N9BAW9	Staphylococcus_phage	97.1	8.7e-34
WP_000695771.1|403897_404305_+	hypothetical protein	NA	M9NST1	Staphylococcus_phage	98.5	2.6e-74
WP_031794818.1|404301_404496_+	hypothetical protein	NA	A0A0U2A067	Staphylococcus_phage	98.4	6.3e-26
WP_031796778.1|404492_404930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031886310.1|404926_405211_+	hypothetical protein	NA	Q9G014	Staphylococcus_virus	95.7	3.7e-43
WP_031886311.1|405203_405455_+	DUF1024 family protein	NA	M9NRI5	Staphylococcus_phage	97.6	7.1e-38
WP_001061834.1|405794_406301_+	hypothetical protein	NA	G4KNP5	Staphylococcus_phage	100.0	1.0e-91
WP_031886312.1|406337_406544_+	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	98.5	4.9e-29
WP_000141184.1|406540_406735_+	hypothetical protein	NA	A0A2I6PDC3	Staphylococcus_phage	100.0	1.3e-28
WP_001072795.1|406731_406935_+	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_031767608.1|406927_407080_+	transcriptional regulator	NA	Q4ZCN4	Staphylococcus_virus	98.0	3.4e-19
WP_031886313.1|407147_407348_+	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	98.5	1.1e-25
WP_031886314.1|407399_409847_+	phage-like protein	NA	A0A2I6PDP5	Staphylococcus_phage	98.8	0.0e+00
WP_078098968.1|409948_410053_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	94.1	1.8e-11
WP_000665205.1|410186_410477_+	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_078098969.1|410457_411825_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	6.6e-263
WP_031883903.1|411837_412275_+	transcriptional regulator	NA	A0A2I6PEB8	Staphylococcus_phage	100.0	1.0e-76
WP_015978060.1|412431_412746_+	HNH endonuclease	NA	Q4ZCU3	Staphylococcus_virus	100.0	2.5e-56
WP_000778933.1|412873_413179_+|terminase	terminase	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_031886315.1|413168_414860_+|terminase	terminase large subunit	terminase	A0A2I6PE99	Staphylococcus_phage	99.6	0.0e+00
WP_001100669.1|414864_416103_+|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_031886316.1|416086_416860_+|protease	Clp protease ClpP	protease	A0A2I6PE26	Staphylococcus_phage	97.3	4.3e-134
WP_031886317.1|416871_418035_+|capsid	phage major capsid protein	capsid	A0A0K1LKB5	Staphylococcus_phage	99.5	6.8e-216
WP_031883908.1|418103_418382_+|head,tail	phage gp6-like head-tail connector protein	head,tail	R4WAL3	Staphylococcus_phage	98.9	3.9e-45
WP_000395498.1|418393_418726_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000110015.1|418722_419124_+	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	99.2	4.0e-67
WP_001028464.1|419124_419520_+	DUF3168 domain-containing protein	NA	A0A0K1LKC0	Staphylococcus_phage	96.2	1.7e-65
WP_031886318.1|419554_420196_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	97.7	8.0e-118
WP_031886319.1|420287_420743_+	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	99.3	1.1e-76
WP_000589165.1|420800_421151_+	hypothetical protein	NA	A0A2I6PDE6	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|421192_421351_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_031902437.1|421364_427565_+|tail	phage tail tape measure protein	tail	A0A2K9VBQ5	Staphylococcus_phage	98.7	0.0e+00
WP_031886321.1|427564_428389_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	98.9	7.8e-158
WP_031886322.1|428397_429981_+	peptidase	NA	Q8SDP1	Staphylococcus_virus	99.8	1.0e-307
WP_000179860.1|429980_430271_+	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000429551.1|430286_432197_+	minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
WP_031886323.1|432196_433663_+|plate	BppU family phage baseplate upper protein	plate	A0A2I6PEI6	Staphylococcus_phage	93.2	4.2e-255
WP_001166599.1|433662_434052_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|434044_434209_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_014532515.1|434348_435296_+|transposase	IS30-like element ISSau1 family transposase	transposase	W5R8L2	Staphylococcus_phage	99.4	1.2e-183
WP_000466784.1|435328_435628_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_031883911.1|435763_436201_+|holin	phage holin	holin	B2ZZ05	Staphylococcus_phage	99.3	1.2e-72
WP_031883912.1|436181_437627_+	CHAP domain-containing protein	NA	A0A0H4ITZ3	Staphylococcus_phage	96.3	5.5e-284
438161:438178	attR	ATCTTACAAGGGTGGGAT	NA	NA	NA	NA
>prophage 3
NZ_CP040232	Staphylococcus aureus strain GD1706 chromosome, complete genome	2876350	826625	834445	2876350		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|826625_827681_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|827680_828367_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037805.1|828341_828815_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093557.1|829155_829596_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637685.1|829876_830461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|830559_831273_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|831276_831696_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|831697_832366_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604516.1|832716_833310_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_001217786.1|833293_834445_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 4
NZ_CP040232	Staphylococcus aureus strain GD1706 chromosome, complete genome	2876350	846415	860731	2876350		uncultured_Caudovirales_phage(50.0%)	16	NA	NA
WP_000663034.1|846415_847474_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
WP_000197271.1|847632_848175_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_001825709.1|848475_848643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000429003.1|848911_849829_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
WP_014936998.1|849919_850027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_149888469.1|850098_851604_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.4	5.2e-59
WP_071938133.1|851665_851872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000930016.1|851943_852444_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068490.1|852463_853330_-	DMT family transporter	NA	NA	NA	NA	NA
WP_078064764.1|853714_853864_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
WP_000692521.1|854131_854530_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|854492_856598_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|856717_857689_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|858058_859030_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245567.1|859016_859973_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
WP_000616865.1|859969_860731_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 5
NZ_CP040232	Staphylococcus aureus strain GD1706 chromosome, complete genome	2876350	913489	962875	2876350	integrase,capsid,head,tail,plate,holin,portal,terminase	Staphylococcus_phage(73.91%)	70	916783:916799	960796:960812
WP_001050055.1|913489_915862_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	8.7e-93
WP_001085185.1|915883_916348_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
916783:916799	attL	ATCCCGCCGTCTCCATA	NA	NA	NA	NA
WP_000146086.1|916859_917909_-|integrase	site-specific integrase	integrase	M9NTA3	Staphylococcus_phage	99.7	2.8e-197
WP_031887090.1|917970_918900_-	DUF5067 domain-containing protein	NA	Q4ZAM2	Staphylococcus_virus	99.0	7.7e-138
WP_031887091.1|918918_919377_-	toxin	NA	B2ZYU2	Staphylococcus_phage	99.3	4.5e-83
WP_000455972.1|919398_919725_-	helix-turn-helix transcriptional regulator	NA	A0A059T5A2	Staphylococcus_phage	100.0	7.0e-54
WP_031887092.1|919887_920097_+	helix-turn-helix transcriptional regulator	NA	A0A059T617	Staphylococcus_phage	98.6	2.4e-31
WP_031887093.1|920135_920837_+	antirepressor	NA	W5R8M8	Staphylococcus_phage	99.6	7.9e-127
WP_000455728.1|920861_921071_+	hypothetical protein	NA	A0A2H4PQR1	Staphylococcus_phage	100.0	9.7e-33
WP_000048129.1|921084_921246_+	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_000829610.1|921338_921656_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	3.9e-33
WP_031887094.1|921660_921921_+	DUF1108 family protein	NA	G4KNN5	Staphylococcus_phage	93.0	1.9e-41
WP_001004336.1|921933_922470_+	hypothetical protein	NA	A0A0F6N4M6	Staphylococcus_phage	100.0	1.4e-80
WP_031901023.1|922470_923118_+	single-stranded DNA-binding protein	NA	A0A0F6N3I5	Staphylococcus_phage	97.7	2.6e-116
WP_031887096.1|923117_923534_+	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	81.0	2.3e-57
WP_031887097.1|923547_924243_+	phi PV83 orf 19-like protein	NA	A0A0E3XBQ6	Staphylococcus_phage	95.7	3.7e-129
WP_149888472.1|924214_925024_+	DnaD domain protein	NA	Q4ZBE3	Staphylococcus_virus	97.4	2.0e-105
WP_031887099.1|925023_925380_+	hypothetical protein	NA	B7T0A8	Staphylococcus_virus	99.2	1.2e-62
WP_031887100.1|925376_926618_+	AAA family ATPase	NA	Q8SDW1	Staphylococcus_phage	99.3	6.3e-228
WP_001024406.1|926614_926830_+	hypothetical protein	NA	A9CR72	Staphylococcus_phage	100.0	2.8e-35
WP_001123688.1|926832_927054_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_031887101.1|927064_927469_+	DUF1064 domain-containing protein	NA	A0A0H3U2R9	Staphylococcus_phage	99.3	8.4e-73
WP_001187242.1|927473_927659_+	DUF3113 family protein	NA	W5R8N4	Staphylococcus_phage	100.0	1.4e-27
WP_031887102.1|927659_928031_+	phage protein	NA	C5I648	Staphylococcus_phage	99.2	1.3e-56
WP_031887103.1|928030_928288_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	95.3	3.1e-41
WP_031887104.1|928290_928491_+	hypothetical protein	NA	C5I650	Staphylococcus_phage	95.5	6.9e-28
WP_031887105.1|928505_928748_+	phage protein	NA	A0A2I6PDB4	Staphylococcus_phage	95.0	1.8e-38
WP_031901024.1|928762_929164_+	hypothetical protein	NA	A7TWH2	Staphylococcus_phage	70.7	6.6e-46
WP_031887107.1|929160_929424_+	hypothetical protein	NA	A0A2I6PDB3	Staphylococcus_phage	90.8	1.7e-37
WP_031901025.1|929416_929668_+	DUF1024 family protein	NA	W5R8J0	Staphylococcus_phage	97.6	1.9e-38
WP_021286125.1|930007_930541_+	dUTPase	NA	W5R8N7	Staphylococcus_phage	100.0	7.9e-95
WP_149888473.1|930577_930766_+	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	98.4	2.4e-14
WP_031904648.1|930779_930974_+	hypothetical protein	NA	A0A2I6PEC2	Staphylococcus_phage	96.9	8.7e-28
WP_001072794.1|930970_931174_+	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	98.5	8.8e-31
WP_000608278.1|931166_931403_+	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
WP_001799187.1|931386_931782_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	3.3e-66
WP_031902440.1|931778_931952_+	transcriptional regulator	NA	Q4ZA36	Staphylococcus_virus	94.7	5.4e-21
WP_000989998.1|931952_932099_+	hypothetical protein	NA	A0A059T5A8	Staphylococcus_phage	100.0	2.2e-15
WP_000058634.1|932113_932533_+	transcriptional regulator	NA	B7T0C4	Staphylococcus_virus	100.0	1.1e-70
WP_149888474.1|932719_933214_+|terminase	terminase small subunit	terminase	B7T0C5	Staphylococcus_virus	97.0	1.2e-86
WP_031887157.1|933216_934506_+|terminase	PBSX family phage terminase large subunit	terminase	B7T0C6	Staphylococcus_virus	98.6	2.0e-253
WP_031887158.1|934516_936055_+|portal	phage portal protein	portal	A0A0F6N4I8	Staphylococcus_phage	95.1	6.1e-281
WP_031887159.1|936061_937057_+|head	phage head morphogenesis protein	head	E0Y3K7	Staphylococcus_virus	98.5	3.2e-182
WP_031887160.1|937129_937300_+	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	94.6	4.8e-22
WP_031887161.1|937434_938049_+	DUF4355 domain-containing protein	NA	I1W646	Staphylococcus_phage	97.5	1.3e-37
WP_031887162.1|938062_939037_+|capsid	phage major capsid protein	capsid	B7T0D2	Staphylococcus_virus	99.4	2.4e-182
WP_001114090.1|939058_939346_+	hypothetical protein	NA	Q8SDU4	Staphylococcus_phage	98.9	1.4e-45
WP_000208957.1|939354_939687_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	99.1	1.2e-53
WP_031901041.1|939683_939986_+	hypothetical protein	NA	S4SUQ1	Staphylococcus_phage	94.0	2.8e-49
WP_031887164.1|939985_940333_+	HK97 gp10 family phage protein	NA	I1W643	Staphylococcus_phage	98.3	5.9e-59
WP_031887165.1|940344_940728_+	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	98.4	7.7e-68
WP_031887166.1|940746_941328_+|tail	phage major tail protein, TP901-1 family	tail	Q8SDU0	Staphylococcus_phage	96.9	7.3e-102
WP_001100161.1|941390_941756_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000105584.1|941785_942130_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_031887167.1|942146_945611_+	membrane protein	NA	Q4ZDE1	Staphylococcus_virus	97.7	1.7e-254
WP_031887168.1|945623_946571_+|tail	phage tail family protein	tail	E0Y3M0	Staphylococcus_virus	99.4	1.0e-182
WP_031887169.1|946579_948481_+	peptidase	NA	I1W634	Staphylococcus_phage	99.4	0.0e+00
WP_149888475.1|948495_950406_+	hypothetical protein	NA	Q4ZDD6	Staphylococcus_virus	96.1	0.0e+00
WP_149888476.1|950405_952229_+|plate	BppU family phage baseplate upper protein	plate	W5R8J5	Staphylococcus_phage	99.2	9.7e-294
WP_000705907.1|952228_952606_+	DUF2977 domain-containing protein	NA	Q4ZDT8	Staphylococcus_virus	99.2	8.1e-54
WP_001790193.1|952609_952783_+	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000466769.1|952823_953123_+	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
WP_031887172.1|953259_955158_+	CHAP domain-containing protein	NA	B2ZZ02	Staphylococcus_phage	98.7	0.0e+00
WP_031887173.1|955170_957765_+|plate	BppU family phage baseplate upper protein	plate	Q4ZC48	Staphylococcus_virus	57.3	5.4e-274
WP_031887174.1|957820_958258_+|holin	phage holin	holin	A7YGY0	Staphylococcus_virus	98.6	1.2e-72
WP_031887175.1|958238_959684_+	CHAP domain-containing protein	NA	Q08JW9	Staphylococcus_phage	99.0	2.0e-294
WP_000125170.1|960212_960419_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	100.0	3.4e-30
WP_031887176.1|960433_960634_+	hypothetical protein	NA	A0A2H4PQS9	Staphylococcus_phage	97.0	6.7e-31
WP_149888477.1|961170_961716_+	hypothetical protein	NA	NA	NA	NA	NA
960796:960812	attR	ATCCCGCCGTCTCCATA	NA	NA	NA	NA
WP_000757407.1|962146_962875_-	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	37.5	1.3e-18
>prophage 6
NZ_CP040232	Staphylococcus aureus strain GD1706 chromosome, complete genome	2876350	1076582	1128596	2876350	protease,holin,bacteriocin,tRNA	Streptococcus_phage(40.0%)	53	NA	NA
WP_000448934.1|1076582_1077572_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1077866_1078262_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217731.1|1078632_1079352_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959279.1|1079472_1080459_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082727.1|1080506_1082315_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	1.2e-46
WP_000896697.1|1082774_1083581_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214070.1|1083603_1083969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224612.1|1084072_1084666_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242104.1|1084851_1085199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1085215_1085851_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1085867_1086677_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669942.1|1086673_1087528_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|1087548_1088934_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|1088943_1090788_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933200.1|1091065_1091836_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1092032_1093118_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570705.1|1093459_1095028_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889181.1|1095169_1095928_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|1096121_1096631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001794241.1|1096743_1097952_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|1097911_1099087_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_031886269.1|1099517_1101002_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_149888563.1|1100982_1101243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049947.1|1101242_1102805_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.0	3.8e-36
WP_000928413.1|1103106_1103910_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_014937014.1|1104128_1106453_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000021872.1|1106469_1107828_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414168.1|1107966_1109478_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1109966_1110536_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1110745_1110964_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668814.1|1111044_1112031_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1112229_1112406_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1112420_1113023_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|1113322_1113400_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_000790905.1|1114034_1114319_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870811.1|1114362_1116327_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|1116329_1116650_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571192.1|1116646_1117288_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.0e-19
WP_001796515.1|1117375_1117666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001792054.1|1117806_1117944_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1118032_1118389_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081332.1|1118879_1119839_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001794249.1|1119887_1120019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001825521.1|1120082_1120373_-	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_000620945.1|1120462_1121014_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1121064_1122003_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_072357920.1|1122153_1122231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001807807.1|1122334_1123546_+	isochorismate synthase	NA	NA	NA	NA	NA
WP_000526673.1|1123532_1125206_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150215.1|1125192_1125996_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|1125988_1126810_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284455.1|1127047_1127377_-	staphostatin B	NA	NA	NA	NA	NA
WP_001088778.1|1127414_1128596_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 7
NZ_CP040232	Staphylococcus aureus strain GD1706 chromosome, complete genome	2876350	1148379	1156852	2876350		Synechococcus_phage(33.33%)	9	NA	NA
WP_001807816.1|1148379_1148862_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010409.1|1148848_1149973_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174055.1|1149976_1150681_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_000848351.1|1150680_1150944_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1150945_1151617_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_031886271.1|1151609_1153799_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.9	1.3e-140
WP_000483707.1|1153777_1155262_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000030815.1|1155254_1156283_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000238668.1|1156285_1156852_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
>prophage 8
NZ_CP040232	Staphylococcus aureus strain GD1706 chromosome, complete genome	2876350	1163424	1215960	2876350	integrase,capsid,head,transposase,tail,holin,protease,portal,terminase	Staphylococcus_phage(89.47%)	67	1169556:1169572	1211284:1211300
WP_149888489.1|1163424_1165101_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	77.9	1.8e-241
WP_000064214.1|1165097_1165232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000009075.1|1165383_1166679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001825499.1|1166699_1166903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685078.1|1167103_1168276_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.8	1.4e-75
WP_000505964.1|1168329_1168872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000437472.1|1169025_1169292_+	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000040043.1|1169294_1171013_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
1169556:1169572	attL	ATTCAACCAATTCAAGA	NA	NA	NA	NA
WP_001289623.1|1171250_1171484_-	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	2.9e-09
WP_000381849.1|1171681_1173043_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_000857185.1|1173269_1174307_-|integrase	site-specific integrase	integrase	Q38086	Staphylococcus_phage	100.0	4.5e-179
WP_031901043.1|1174369_1174612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031901044.1|1174622_1175606_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000694772.1|1175704_1175887_-	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
WP_031901045.1|1176116_1176701_-	hypothetical protein	NA	Q4ZCY3	Staphylococcus_virus	97.4	8.4e-66
WP_000109193.1|1176756_1176942_-	hypothetical protein	NA	Q9G041	Staphylococcus_virus	96.7	4.3e-24
WP_031768797.1|1177096_1177810_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	99.2	1.0e-129
WP_000854068.1|1177944_1178214_+	helix-turn-helix transcriptional regulator	NA	H9A0Y0	Staphylococcus_phage	94.4	5.3e-39
WP_031901046.1|1178229_1179018_+	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	99.6	2.7e-144
WP_001148861.1|1179034_1179232_+	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_000939496.1|1179262_1179403_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001120197.1|1180109_1180430_+	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000066020.1|1180426_1180588_+	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_001801013.1|1180680_1180968_+	DUF2482 family protein	NA	A0A0F6N3N3	Staphylococcus_phage	100.0	3.2e-42
WP_000291506.1|1180988_1181249_+	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	96.5	1.9e-41
WP_001205732.1|1181257_1181521_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700570.1|1181529_1183473_+	AAA family ATPase	NA	I1W619	Staphylococcus_phage	96.4	0.0e+00
WP_000138473.1|1183474_1184395_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	99.0	7.3e-165
WP_072519237.1|1184460_1185093_+	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.4e-87
WP_000934769.1|1185093_1185564_+	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	100.0	5.7e-81
WP_031901047.1|1185593_1186487_+	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	7.2e-141
WP_000338530.1|1186493_1186712_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000185669.1|1186856_1187393_+	hypothetical protein	NA	R4IG63	Staphylococcus_phage	100.0	9.4e-96
WP_001282074.1|1187429_1187675_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_149888490.1|1187671_1187878_+	DUF1381 domain-containing protein	NA	B7T0C2	Staphylococcus_virus	94.1	1.3e-18
WP_031761843.1|1187874_1188024_+	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	1.1e-17
WP_001005262.1|1188182_1188833_+	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_000265043.1|1188832_1189033_+	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000590122.1|1189060_1189477_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988330.1|1189708_1190008_+	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|1190137_1190482_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_031901050.1|1190478_1192140_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	99.6	0.0e+00
WP_149888491.1|1192155_1193343_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	99.7	3.0e-219
WP_000642728.1|1193326_1194064_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|1194087_1195233_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|1195252_1195537_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|1195526_1195811_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|1195794_1196157_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114226.1|1196153_1196558_+	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000565498.1|1196554_1196962_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268740.1|1196962_1197607_+|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_071621395.1|1197648_1197873_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|1197922_1198273_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_031901051.1|1198517_1203062_+|tail	phage tail tape measure protein	tail	A0A075M036	Staphylococcus_phage	98.5	0.0e+00
WP_000567390.1|1203058_1204543_+|tail	phage tail protein	tail	A0A068A242	Staphylococcus_phage	100.0	1.5e-297
WP_031901052.1|1204558_1208341_+	phage minor structural protein	NA	A0A1X9H096	Staphylococcus_phage	99.6	0.0e+00
WP_001000058.1|1208333_1208486_+	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_031901053.1|1208531_1208819_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	96.8	1.6e-41
WP_000539688.1|1208876_1209173_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_000387655.1|1209709_1210012_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	94.0	6.5e-46
WP_000930251.1|1210022_1211477_+	CHAP domain-containing protein	NA	A0A0N6WMR3	Staphylococcus_phage	95.6	2.3e-277
1211284:1211300	attR	ATTCAACCAATTCAAGA	NA	NA	NA	NA
WP_000185611.1|1211821_1212562_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000727645.1|1213674_1214124_-	chemotaxis-inhibiting protein CHIPS	NA	A0A075LZI2	Staphylococcus_phage	100.0	8.7e-79
WP_000702262.1|1214806_1215157_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|1215209_1215470_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_001789576.1|1215448_1215757_-	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	3.2e-40
WP_000669791.1|1215780_1215960_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
>prophage 9
NZ_CP040232	Staphylococcus aureus strain GD1706 chromosome, complete genome	2876350	1458080	1464838	2876350	head	Staphylococcus_phage(83.33%)	9	NA	NA
WP_001807853.1|1458080_1458278_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
WP_074347689.1|1458964_1459192_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001002341.1|1459492_1459699_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_001788716.1|1460399_1460510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1460901_1461087_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477489.1|1461597_1462014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000974166.1|1462444_1463029_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_000585092.1|1463677_1463929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_074347678.1|1463998_1464838_+|head	head morphogenesis protein	head	A0A1J0MFV1	Staphylococcus_phage	50.7	1.1e-29
>prophage 10
NZ_CP040232	Staphylococcus aureus strain GD1706 chromosome, complete genome	2876350	1736073	1744385	2876350	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1736073_1736859_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1736984_1737875_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062171.1|1737884_1739231_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683941.1|1739344_1740445_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624563.1|1740447_1741125_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1741255_1742362_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217255.1|1742585_1744385_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 11
NZ_CP040232	Staphylococcus aureus strain GD1706 chromosome, complete genome	2876350	1813809	1822852	2876350	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_149888513.1|1813809_1814328_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	7.3e-29
WP_000595008.1|1814349_1816623_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000749801.1|1816825_1819105_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1819379_1819640_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1819658_1820798_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_149888514.1|1820820_1821846_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005766.1|1821847_1822852_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 12
NZ_CP040232	Staphylococcus aureus strain GD1706 chromosome, complete genome	2876350	1946576	1994421	2876350	transposase,protease,tRNA	Staphylococcus_phage(91.89%)	48	NA	NA
WP_031886264.1|1946576_1953125_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
WP_000836471.1|1953448_1953760_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_149888525.1|1953781_1956196_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.0	0.0e+00
WP_001025064.1|1956486_1957668_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|1957777_1958731_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764426.1|1958727_1959291_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000757543.1|1959409_1959811_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1960383_1961211_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1961213_1961333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001834472.1|1961344_1961536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1961444_1962446_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008555.1|1962573_1963032_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001159034.1|1963044_1964226_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_149888526.1|1964236_1964869_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	2.9e-112
WP_000384182.1|1964875_1965907_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_001261673.1|1966399_1967902_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221190.1|1968544_1968859_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989103.1|1968858_1970151_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_001032832.1|1970237_1971092_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1971367_1971592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671058.1|1971790_1972261_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_149888527.1|1972373_1972817_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030475.1|1972803_1973247_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	78.6	6.4e-50
WP_001168915.1|1973544_1974180_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492903.1|1974346_1974967_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1975529_1976243_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091443.1|1976501_1976804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200546.1|1977058_1977424_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000623484.1|1977420_1977774_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_000453302.1|1978023_1978857_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000366160.1|1979068_1979977_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_000933822.1|1980101_1981295_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109913.1|1981666_1983259_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_016187361.1|1983555_1984302_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000672013.1|1984306_1984780_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1984845_1985103_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778553.1|1985099_1986101_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_000348381.1|1986105_1987584_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_016187363.1|1987742_1988198_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_001825423.1|1988500_1989163_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_000070644.1|1989243_1990239_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_000669036.1|1990314_1990941_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000627549.1|1990981_1991326_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000414230.1|1991423_1991996_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000864133.1|1992193_1992751_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000375476.1|1993120_1993297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070813.1|1993307_1993691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196442.1|1994139_1994421_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
