The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	0	44963	2804820	integrase,tail,protease,terminase,capsid,head,portal,holin	Staphylococcus_phage(96.77%)	47	40252:40268	47686:47702
WP_000625088.1|0_1662_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|1677_2865_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642727.1|2848_3586_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	99.6	4.0e-129
WP_000154559.1|3609_4755_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238237.1|4774_5035_+	hypothetical protein	NA	A0A0H3U504	Staphylococcus_phage	100.0	6.4e-42
WP_000150936.1|5047_5332_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|5315_5678_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114226.1|5674_6079_+	HK97 gp10 family phage protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000565498.1|6075_6483_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268735.1|6483_7128_+|tail	phage tail protein	tail	A0EWZ9	Staphylococcus_phage	100.0	3.8e-120
WP_071621395.1|7169_7394_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|7443_7794_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_001549167.1|7844_7982_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_000504557.1|8038_12583_+|tail	phage tail tape measure protein	tail	A0A075M036	Staphylococcus_phage	99.4	0.0e+00
WP_000567393.1|12579_14064_+|tail	phage tail family protein	tail	A0A075LZV5	Staphylococcus_phage	100.0	5.3e-298
WP_000582184.1|14079_17865_+	hypothetical protein	NA	D2JLF9	Staphylococcus_phage	97.8	0.0e+00
WP_000654329.1|17854_18007_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	98.0	1.2e-19
WP_001040255.1|18053_18341_+	hypothetical protein	NA	A0A075LZJ6	Staphylococcus_phage	100.0	5.8e-44
WP_000340977.1|18396_18771_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_025174055.1|19191_19965_+	staphylococcal enterotoxin type P	NA	A0A075M4C7	Staphylococcus_phage	99.6	4.0e-148
WP_011447039.1|20167_20344_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_031762631.1|20396_20504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|20555_20810_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|20821_21577_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920038.1|21767_22259_+	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000702263.1|23755_24106_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|24158_24419_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669791.1|24729_24909_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_000669721.1|25866_27921_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001068542.1|28244_29531_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|29730_29829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|30071_30248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|30506_30887_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991302.1|30883_31780_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645727.1|31780_32461_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|32457_33330_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221651.1|33329_34070_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|34135_34699_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966288.1|34819_35344_+	membrane protein	NA	NA	NA	NA	NA
WP_001033971.1|35403_35961_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713072.1|35957_36800_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188077.1|36856_37897_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|38347_38521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001820623.1|39583_40696_+|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.6	1.7e-11
40252:40268	attL	AATAGTTTTGAAAAATA	NA	NA	NA	NA
WP_000026852.1|40698_42762_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000410572.1|42770_43136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000612781.1|44552_44963_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	50.4	2.4e-27
47686:47702	attR	AATAGTTTTGAAAAATA	NA	NA	NA	NA
>prophage 2
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	52737	54767	2804820		Bacillus_virus(50.0%)	2	NA	NA
WP_000149686.1|52737_53298_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275730.1|53669_54767_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
>prophage 3
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	58801	61085	2804820		Bacillus_virus(100.0%)	2	NA	NA
WP_000284431.1|58801_60271_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000040873.1|60263_61085_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
>prophage 4
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	64787	71554	2804820		Gordonia_phage(33.33%)	5	NA	NA
WP_000572878.1|64787_66083_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_001165363.1|66191_66494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000272070.1|66665_67358_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_000992921.1|67354_69547_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000774565.1|69550_71554_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
>prophage 5
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	78671	83700	2804820		Catovirus(33.33%)	5	NA	NA
WP_001231451.1|78671_79619_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.2e-16
WP_001147868.1|79699_81061_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.8	1.1e-103
WP_000548781.1|81230_81761_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000140176.1|82007_83078_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613733.1|83145_83700_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	36.3	9.2e-30
>prophage 6
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	87151	87565	2804820		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001549145.1|87151_87565_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	37.7	5.1e-17
>prophage 7
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	92734	93364	2804820		Bacillus_phage(100.0%)	1	NA	NA
WP_000153530.1|92734_93364_+	two-component system response regulator VraR	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 8
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	108848	110585	2804820		Bacillus_phage(100.0%)	1	NA	NA
WP_000597238.1|108848_110585_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
>prophage 9
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	127123	127846	2804820		Planktothrix_phage(100.0%)	1	NA	NA
WP_000590809.1|127123_127846_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.3e-36
>prophage 10
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	138682	139027	2804820		Streptococcus_phage(100.0%)	1	NA	NA
WP_000290301.1|138682_139027_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
>prophage 11
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	148499	149240	2804820		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000216878.1|148499_149240_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
>prophage 12
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	158121	221960	2804820	transposase,protease	Staphylococcus_phage(92.16%)	63	NA	NA
WP_000206350.1|158121_158910_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
WP_001790220.1|158922_159462_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000473596.1|160261_161197_+	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782464.1|161198_162182_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000416759.1|162423_162567_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000416756.1|163304_163448_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001092605.1|163512_166506_+	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000566596.1|166498_167743_+	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_000504439.1|167758_168277_+	flavoprotein	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000691541.1|168286_169660_+	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_001096791.1|169682_170375_+	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000581553.1|170371_171133_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	99.6	1.7e-130
WP_000586140.1|171129_171828_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_001092766.1|172301_172868_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	99.5	9.5e-99
WP_001039435.1|173834_174542_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001039447.1|174666_175389_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001038867.1|175446_176166_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001038688.1|176286_177006_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001791797.1|177070_177205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000028669.1|177368_178925_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_001037045.1|185594_185972_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001791893.1|186319_186421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|186543_186639_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001549059.1|186841_186985_+|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_000070811.1|187588_187972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|187982_188159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000809857.1|188160_188346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000494956.1|188459_189101_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000414205.1|189318_189870_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000627551.1|189967_190312_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000669046.1|190352_190979_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000070653.1|191054_192050_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_001795535.1|192130_192781_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_011443643.1|193083_193539_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_000348359.1|193697_195176_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.7	7.6e-281
WP_000778525.1|195180_196182_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.2e-186
WP_000718107.1|196178_196436_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672014.1|196501_196975_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_002868962.1|196979_197726_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000093392.1|198100_198586_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_000109906.1|198721_200314_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|200684_201878_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366154.1|202002_202911_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000453320.1|203122_203956_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000623472.1|206039_206393_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	88.0	6.5e-13
WP_001200542.1|206389_206755_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091445.1|207010_207313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|207572_208286_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|208725_209361_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030465.1|209656_210100_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001153742.1|210086_210530_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671052.1|210642_211113_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_000384171.1|211311_211536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|211811_212666_+	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163235.1|212960_213356_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_000989121.1|213373_214666_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221180.1|214665_214980_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	99.0	9.8e-53
WP_001261681.1|215502_217005_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000077344.1|217485_218529_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	6.3e-197
WP_000493896.1|218535_219168_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
WP_001159022.1|219178_220360_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_001008551.1|220372_220837_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|220958_221960_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 13
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	225120	239234	2804820	tRNA	Staphylococcus_phage(100.0%)	7	NA	NA
WP_000764419.1|225120_225684_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|225680_226634_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|226743_227925_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001804761.1|228212_230630_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_000836465.1|230651_230963_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001050545.1|231288_237849_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	2.3e-305
WP_000285019.1|237965_239234_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	100.0	4.1e-57
>prophage 14
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	250886	256214	2804820		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091387.1|250886_251744_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
WP_001048368.1|251772_252369_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_000118293.1|252389_256214_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.6e-83
>prophage 15
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	265119	266826	2804820		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862083.1|265119_266826_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	100.0	1.2e-274
>prophage 16
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	273443	276074	2804820	tRNA	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186029.1|273443_274706_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
WP_001279338.1|274799_276074_-	trypsin-like peptidase domain-containing protein	NA	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 17
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	279843	283978	2804820		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000808845.1|279843_281448_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
WP_000291430.1|281434_282595_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000553926.1|282708_283155_-	OsmC family protein	NA	NA	NA	NA	NA
WP_000174282.1|283234_283978_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	30.0	4.9e-18
>prophage 18
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	301518	304716	2804820		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226911.1|301518_304716_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.7	1.3e-136
>prophage 19
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	309649	311407	2804820		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232648.1|309649_311407_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	2.6e-41
>prophage 20
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	318267	326431	2804820		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_000080028.1|318267_318972_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_011443641.1|318971_320633_+	HAMP domain-containing sensor histidine kinase	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
WP_000849439.1|321131_322619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038308.1|322912_325543_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
WP_001114452.1|325558_326431_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.0e-42
>prophage 21
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	330345	341498	2804820	protease,tRNA	Brevibacillus_phage(20.0%)	12	NA	NA
WP_000808621.1|330345_331266_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
WP_001790562.1|331358_331481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435132.1|331678_333616_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_000049154.1|334041_335535_+	amino acid permease	NA	NA	NA	NA	NA
WP_001791162.1|335763_336291_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	4.1e-11
WP_001125540.1|336319_336520_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|336566_336923_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032659.1|337064_337673_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.5	1.9e-20
WP_001280018.1|337691_338621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|338625_338736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127573.1|338783_340085_+	trigger factor	NA	NA	NA	NA	NA
WP_000472302.1|340235_341498_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
>prophage 22
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	351065	353696	2804820	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000425353.1|351065_353696_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	3.7e-153
>prophage 23
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	363563	398943	2804820	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005767.1|363563_364568_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019172.1|364569_365595_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|365617_366757_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|366775_367036_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|367310_369590_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594993.1|369792_372066_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000364542.1|372087_372606_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_001058583.1|373033_375223_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869983.1|375234_375687_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_000717800.1|375683_376559_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|377019_378282_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000044799.1|378297_380064_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_001790559.1|380396_380525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682646.1|380524_381298_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102735.1|381458_382733_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.7	1.8e-105
WP_000704122.1|382817_383240_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000752909.1|383339_383522_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000009238.1|383561_383708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985886.1|383944_384958_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000409167.1|385269_386412_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	8.3e-33
WP_000066097.1|386412_387531_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567028.1|387992_388661_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_001283311.1|388662_391140_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000734064.1|391482_394113_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|394175_394436_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939057.1|394439_394868_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134779.1|394882_395191_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000342266.1|395475_396114_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
WP_000137775.1|396116_397040_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_150029178.1|397051_398320_+	U32 family peptidase C-terminal domain-containing protein	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|398319_398943_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 24
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	405608	407995	2804820		Lactococcus_phage(50.0%)	2	NA	NA
WP_000542309.1|405608_406829_+	Fic family protein	NA	Q9AZ49	Lactococcus_phage	33.3	5.0e-52
WP_001548981.1|407242_407995_+	enterotoxin	NA	A0EX09	Staphylococcus_phage	39.8	4.6e-48
>prophage 25
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	415264	421428	2804820		Bacillus_phage(33.33%)	5	NA	NA
WP_000439693.1|415264_415726_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_001805151.1|415730_417932_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	1.2e-32
WP_001282562.1|417988_418963_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|419007_419259_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368341.1|419604_421428_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
>prophage 26
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	424919	428027	2804820		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034716.1|424919_426752_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119021.1|426887_428027_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.8	1.2e-26
>prophage 27
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	434497	435445	2804820		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117767.1|434497_435445_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 28
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	438498	452226	2804820	tRNA	Klosneuvirus(25.0%)	13	NA	NA
WP_001030080.1|438498_439890_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.4	4.7e-46
WP_001789866.1|440224_440848_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411299.1|440858_441677_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001217261.1|441737_443537_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
WP_001283055.1|443760_444867_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624584.1|444997_445675_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683931.1|445677_446778_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062180.1|446891_448238_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000924214.1|448247_449138_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_000189275.1|449281_450049_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	7.8e-19
WP_000564316.1|450090_450954_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095260.1|450940_451351_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|451626_452226_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 29
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	458399	459023	2804820		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223008.1|458399_459023_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
>prophage 30
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	464567	467379	2804820		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_000019687.1|464567_465914_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.7	6.3e-64
WP_000202189.1|465906_467379_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA	E3SN07	Prochlorococcus_phage	41.3	6.2e-81
>prophage 31
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	474879	481450	2804820		Indivirus(66.67%)	6	NA	NA
WP_001286928.1|474879_476217_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.6e-43
WP_000159865.1|476209_476440_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183378.1|476417_477299_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	26.1	8.9e-11
WP_001124985.1|477730_478183_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000942211.1|478198_479878_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291535.1|480028_481450_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.3	5.1e-40
>prophage 32
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	488279	489686	2804820		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|488279_489686_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 33
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	494332	495817	2804820		Cyanophage(100.0%)	1	NA	NA
WP_000105070.1|494332_495817_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 34
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	499346	507631	2804820		Klosneuvirus(20.0%)	10	NA	NA
WP_001171351.1|499346_500255_-	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	31.5	3.4e-05
WP_000365246.1|500336_500879_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000392691.1|500983_501433_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000447733.1|501481_502369_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
WP_001183429.1|502446_502953_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273371.1|503044_503776_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	7.9e-05
WP_000368653.1|503768_504311_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000159577.1|504303_505041_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064078.1|505173_505899_+	two-component system response regulator SrrA	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000987772.1|505879_507631_+	two-component system sensor histidine kinase SrrB	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
>prophage 35
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	515337	518016	2804820		Bacillus_phage(50.0%)	3	NA	NA
WP_001151997.1|515337_515586_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163801.1|515693_516647_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000902119.1|516636_518016_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
>prophage 36
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	527440	532907	2804820		Bacillus_phage(25.0%)	7	NA	NA
WP_001043863.1|527440_527713_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450553.1|528143_528716_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|528718_529444_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001096471.1|529445_530405_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|530496_530946_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|531154_531355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269929.1|531740_532907_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
>prophage 37
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	536569	537145	2804820		Bacillus_virus(100.0%)	1	NA	NA
WP_000005213.1|536569_537145_+	YpiB family protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
>prophage 38
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	540515	548021	2804820	tRNA	unidentified_phage(25.0%)	5	NA	NA
WP_000361544.1|540515_541718_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000049919.1|541704_542676_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525078.1|542699_545393_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858789.1|545714_547007_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000362212.1|547334_548021_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	5.5e-08
>prophage 39
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	551761	552439	2804820		Bacillus_phage(100.0%)	1	NA	NA
WP_001795446.1|551761_552439_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.9e-24
>prophage 40
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	561713	562592	2804820		Bacillus_phage(100.0%)	1	NA	NA
WP_001133011.1|561713_562592_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	6.2e-20
>prophage 41
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	599760	609150	2804820		Staphylococcus_phage(60.0%)	13	NA	NA
WP_000282171.1|599760_600465_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
WP_001795441.1|600709_600904_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_000691942.1|600915_601167_+	NifU N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_000404650.1|601204_602329_+	virulence factor C	NA	NA	NA	NA	NA
WP_000995287.1|602344_602782_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934885.1|603205_604162_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175746.1|604361_604841_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
WP_000166059.1|604855_605695_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	77.3	2.3e-48
WP_000159902.1|605780_606314_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913315.1|606306_606735_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473652.1|606746_607247_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|607246_607468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000342125.1|607659_609150_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.3e-22
>prophage 42
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	612558	614570	2804820		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|612558_613218_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_000166800.1|613214_614570_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
>prophage 43
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	620735	621527	2804820		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|620735_621527_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 44
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	626007	631038	2804820	lysis	Lactobacillus_phage(33.33%)	7	NA	NA
WP_000138402.1|626007_627144_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	3.3e-34
WP_001788788.1|627175_627805_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	lysis	NA	NA	NA	NA
WP_001215907.1|627823_628093_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|628255_628564_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|628734_628935_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876201.1|629131_629533_+	sarA expression modulator protein Msa	NA	NA	NA	NA	NA
WP_000216946.1|629772_631038_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.2	6.2e-13
>prophage 45
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	638882	640484	2804820		Klosneuvirus(100.0%)	1	NA	NA
WP_000942300.1|638882_640484_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 46
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	645570	649024	2804820		Indivirus(50.0%)	3	NA	NA
WP_000079447.1|645570_646422_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	8.9e-16
WP_000974847.1|646428_647070_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000077571.1|647209_649024_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.1	5.1e-154
>prophage 47
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	652438	653140	2804820		Tupanvirus(100.0%)	1	NA	NA
WP_000571258.1|652438_653140_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	1.5e-13
>prophage 48
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	660656	663011	2804820		Acinetobacter_phage(100.0%)	3	NA	NA
WP_000154116.1|660656_661439_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.3	1.2e-27
WP_000173832.1|661440_662439_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	35.3	3.8e-34
WP_000604817.1|662444_663011_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	32.1	1.3e-23
>prophage 49
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	667329	668592	2804820		Bacillus_phage(100.0%)	1	NA	NA
WP_000283015.1|667329_668592_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.1	2.2e-95
>prophage 50
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	678251	682645	2804820		Bacillus_phage(50.0%)	2	NA	NA
WP_001289569.1|678251_680654_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.2	1.8e-93
WP_001548666.1|680653_682645_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	8.0e-116
>prophage 51
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	688581	690228	2804820		Vibrio_phage(100.0%)	1	NA	NA
WP_001088978.1|688581_690228_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 52
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	693897	695019	2804820		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691284.1|693897_695019_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
>prophage 53
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	699168	704824	2804820		Phage_Wrath(25.0%)	6	NA	NA
WP_001208760.1|699168_699792_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	3.5e-17
WP_001789887.1|700171_701188_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	4.8e-16
WP_000688126.1|701209_702187_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	100.0	2.1e-186
WP_001085655.1|702343_702613_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|703066_703216_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000082539.1|703306_704824_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	2.3e-91
>prophage 54
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	714960	719236	2804820		Bacillus_phage(50.0%)	6	NA	NA
WP_000841351.1|714960_715494_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_001027143.1|715632_715821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000202390.1|715933_716536_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000670298.1|716532_717624_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000603968.1|717627_718359_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000593436.1|718327_719236_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.9	3.1e-22
>prophage 55
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	725548	730209	2804820	capsid	Staphylococcus_phage(80.0%)	8	NA	NA
WP_170943459.1|725548_726037_-|capsid	minor capsid protein	capsid	A0A2H4IYR8	uncultured_Caudovirales_phage	76.7	2.5e-23
WP_000956747.1|726178_726430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000477492.1|726558_726663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|727174_727360_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001788716.1|727787_727898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002340.1|728598_728805_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_001789892.1|729098_729323_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001789891.1|730011_730209_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
>prophage 56
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	735278	735755	2804820		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448078.1|735278_735755_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
>prophage 57
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	741697	748169	2804820		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103743.1|741697_742516_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
WP_001077635.1|742980_743523_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516259.1|743528_745538_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.0	4.8e-60
WP_000073352.1|745550_748169_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
>prophage 58
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	757583	758627	2804820		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|757583_758627_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 59
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	762828	768498	2804820		Bacillus_virus(33.33%)	4	NA	NA
WP_072508477.1|762828_764115_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	27.9	8.7e-15
WP_000089940.1|764114_765380_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.5	7.7e-40
WP_001293307.1|765410_766124_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000035767.1|766128_768498_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	7.3e-84
>prophage 60
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	773512	785325	2804820	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864185.1|773512_774484_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282305.1|774498_775416_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|775584_775935_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000043634.1|776320_778438_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000020853.1|778442_778760_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|778756_779041_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097466.1|779061_780237_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000036631.1|780257_780725_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_001820550.1|781014_785325_-	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 61
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	789598	790369	2804820		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473705.1|789598_790369_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 62
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	795143	808813	2804820	protease,tRNA	Erwinia_phage(16.67%)	10	NA	NA
WP_000379054.1|795143_796547_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
WP_000072681.1|796612_797158_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001015597.1|797154_798051_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.5	3.6e-31
WP_000195254.1|798467_799775_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001548566.1|799930_802006_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	1.7e-105
WP_000672867.1|803223_804468_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_001041662.1|804495_805614_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	9.5e-50
WP_000110253.1|805840_806749_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
WP_001020801.1|806770_807937_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176394.1|808045_808813_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
>prophage 63
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	822197	824255	2804820		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|822197_822929_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|823044_823278_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167269.1|823520_824255_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 64
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	834625	836620	2804820		Moumouvirus(100.0%)	1	NA	NA
WP_000579564.1|834625_836620_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 65
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	839767	840703	2804820	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161299.1|839767_840703_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.9	1.2e-10
>prophage 66
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	845715	847972	2804820		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_000722165.1|845715_846915_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
WP_000933956.1|847130_847349_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000368227.1|847348_847972_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.7	3.6e-22
>prophage 67
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	851286	851898	2804820		Pandoravirus(100.0%)	1	NA	NA
WP_001040245.1|851286_851898_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	6.2e-27
>prophage 68
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	855865	860476	2804820		Halovirus(33.33%)	4	NA	NA
WP_001190913.1|855865_856966_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
WP_000767028.1|856967_858242_-	dihydroorotase	NA	NA	NA	NA	NA
WP_001016166.1|858259_859141_-	aspartate carbamoyltransferase catalytic subunit	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	4.6e-31
WP_001178619.1|859168_860476_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 69
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	864939	867693	2804820	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000384691.1|864939_867693_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	3.6e-90
>prophage 70
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	887283	887472	2804820		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245802.1|887283_887472_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	86.9	3.8e-20
>prophage 71
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	896555	898515	2804820		Staphylococcus_phage(100.0%)	3	NA	NA
WP_001802045.1|896555_896780_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	71.4	5.6e-18
WP_000765708.1|896736_896883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857483.1|897555_898515_+	alpha-hemolysin	NA	A0A2H4PQH7	Staphylococcus_phage	29.9	2.8e-34
>prophage 72
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	912460	917018	2804820		Staphylococcus_phage(33.33%)	3	NA	NA
WP_001018928.1|912460_912775_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001249285.1|912947_915296_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.3	1.1e-15
WP_000161942.1|915305_917018_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	8.9e-15
>prophage 73
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	921759	922818	2804820	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003559.1|921759_922818_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 74
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	934765	937673	2804820		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_000401377.1|934765_935248_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_001263796.1|935249_935792_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000814565.1|935861_936251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049150.1|936253_936508_-	YlbG family protein	NA	NA	NA	NA	NA
WP_000757569.1|936746_937673_+	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	1.7e-12
>prophage 75
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	949190	951038	2804820		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000182654.1|949190_951038_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
>prophage 76
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	959172	968005	2804820		Mycoplasma_phage(25.0%)	9	NA	NA
WP_000433551.1|959172_960267_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.4e-37
WP_001020625.1|960279_960819_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000455597.1|960962_961238_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|961405_962812_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
WP_000863441.1|962815_964108_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_000068176.1|964198_965176_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
WP_000035320.1|965179_966292_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	A0A0K0KW14	Prochlorococcus_phage	27.8	1.4e-05
WP_000668339.1|966462_967089_-	YkyA family protein	NA	NA	NA	NA	NA
WP_000957036.1|967453_968005_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.2	1.6e-13
>prophage 77
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	974119	978499	2804820		Bacillus_virus(50.0%)	5	NA	NA
WP_001289614.1|974119_974353_+	glutaredoxin-like protein NrdH	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
WP_000040054.1|974589_976308_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|976310_976577_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505965.1|976730_977273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685079.1|977326_978499_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.8	9.0e-75
>prophage 78
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	981615	996375	2804820		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_000921968.1|981615_983016_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.3	1.1e-10
WP_000273253.1|983008_983815_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001101908.1|984079_985327_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709290.1|985348_986827_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.5	9.2e-77
WP_000238664.1|986841_987408_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030812.1|987410_988439_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000483713.1|988431_989916_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032728.1|989894_992084_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.3e-140
WP_000666799.1|992076_992748_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|992749_993013_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|993012_993717_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010412.1|993720_994845_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|994831_995314_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_000225837.1|995514_996375_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.2	5.3e-40
>prophage 79
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1006772	1010543	2804820		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001074556.1|1006772_1010543_+	glucosaminidase domain-containing protein	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	1.1e-54
>prophage 80
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1014210	1015221	2804820		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000676548.1|1014210_1015221_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	32.3	6.2e-16
>prophage 81
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1023602	1023818	2804820		Enterococcus_phage(100.0%)	1	NA	NA
WP_000867357.1|1023602_1023818_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
>prophage 82
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1028381	1029023	2804820		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571179.1|1028381_1029023_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
>prophage 83
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1039218	1044429	2804820	protease	Pithovirus(33.33%)	3	NA	NA
WP_000455278.1|1039218_1041543_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000928412.1|1041761_1042565_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049959.1|1042866_1044429_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
>prophage 84
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1063357	1065166	2804820		Streptococcus_phage(100.0%)	1	NA	NA
WP_000082731.1|1063357_1065166_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	9.3e-47
>prophage 85
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1071961	1072948	2804820		Bacillus_virus(100.0%)	1	NA	NA
WP_001067038.1|1071961_1072948_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.4	1.0e-15
>prophage 86
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1076599	1078613	2804820		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_000786734.1|1076599_1077541_-	ATP-binding cassette domain-containing protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	1.6e-05
WP_000140050.1|1077530_1078613_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
>prophage 87
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1087208	1094018	2804820		Micromonas_sp._RCC1109_virus(33.33%)	4	NA	NA
WP_096391871.1|1087208_1088354_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.3	8.6e-06
WP_001047066.1|1088463_1089333_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000353955.1|1089391_1092001_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001044214.1|1092203_1094018_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	1.1e-36
>prophage 88
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1099135	1102789	2804820		Bacillus_phage(100.0%)	1	NA	NA
WP_000154930.1|1099135_1102789_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.5	3.5e-24
>prophage 89
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1112943	1119988	2804820		Paramecium_bursaria_Chlorella_virus(33.33%)	6	NA	NA
WP_000185326.1|1112943_1113873_+	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	28.7	4.0e-17
WP_000138487.1|1114261_1115506_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_000167314.1|1115614_1116805_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.3e-33
WP_000838037.1|1117112_1118240_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|1118601_1118979_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035058.1|1119394_1119988_-	peptidylprolyl isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.1e-25
>prophage 90
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1129908	1133536	2804820		Mycoplasma_phage(50.0%)	3	NA	NA
WP_001009697.1|1129908_1131384_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.9	6.9e-48
WP_000046076.1|1131514_1132723_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_001143497.1|1133176_1133536_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
>prophage 91
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1137579	1140248	2804820		Pseudomonas_phage(50.0%)	2	NA	NA
WP_000613541.1|1137579_1138794_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_000129653.1|1138790_1140248_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.3	4.4e-39
>prophage 92
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1153368	1156891	2804820		environmental_halophage(50.0%)	3	NA	NA
WP_001006454.1|1153368_1154619_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.4e-110
WP_000205572.1|1154724_1156032_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000168845.1|1156129_1156891_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 93
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1160377	1161403	2804820		Bacillus_virus(100.0%)	1	NA	NA
WP_000571218.1|1160377_1161403_-	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
>prophage 94
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1164664	1169862	2804820		Streptococcus_phage(50.0%)	8	NA	NA
WP_000589549.1|1164664_1165021_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001190695.1|1165164_1165485_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
WP_000422908.1|1165634_1166174_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150017.1|1166256_1166973_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	30.6	3.0e-17
WP_000974460.1|1167120_1167543_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000569884.1|1167941_1168436_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000255561.1|1168590_1169208_+	amino acid transporter	NA	NA	NA	NA	NA
WP_001140693.1|1169280_1169862_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.9	5.5e-33
>prophage 95
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1173246	1174490	2804820		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|1173246_1173447_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_001548082.1|1173803_1174490_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	3.8e-33
>prophage 96
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1186063	1207519	2804820	terminase,integrase,coat	Staphylococcus_phage(68.42%)	28	1195453:1195468	1202841:1202856
WP_001574561.1|1186063_1186786_+	staphylococcal enterotoxin type L	NA	A0A1X9H080	Staphylococcus_phage	34.9	1.2e-26
WP_000278088.1|1186952_1187753_-	staphylococcal enterotoxin type C3	NA	A0A097PAT7	Streptococcus_pyogenes_phage	47.5	6.1e-51
WP_001035616.1|1188540_1189101_+	DUF4888 domain-containing protein	NA	Q4ZBG8	Staphylococcus_virus	68.1	5.4e-62
WP_001035599.1|1189977_1190682_+	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_096391866.1|1190836_1191406_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.3	1.9e-99
WP_000358778.1|1191402_1191744_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_000771356.1|1191746_1192274_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	1.2e-87
WP_000448775.1|1192324_1192543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846292.1|1192560_1193139_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	39.5	1.6e-29
WP_001161659.1|1193150_1193492_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	96.5	2.1e-56
WP_001019770.1|1193838_1194480_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	1.8e-109
WP_001149387.1|1194481_1194754_-	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	100.0	3.2e-44
WP_150029185.1|1194740_1195544_-	bifunctional DNA primase/polymerase	NA	Q4ZE69	Staphylococcus_phage	96.6	9.9e-150
1195453:1195468	attL	GCAAATGAAACAGTTG	NA	NA	NA	NA
WP_150029187.1|1195719_1197336_-	phage resistance protein	NA	A0A1W6JPF4	Staphylococcus_phage	77.8	5.6e-245
WP_053819376.1|1197395_1197704_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.4	8.7e-22
WP_000403838.1|1197704_1198088_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_001231376.1|1198089_1198293_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000784892.1|1198259_1198433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000164237.1|1198429_1198657_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001060953.1|1198692_1198899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_078064262.1|1199056_1199704_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000121224.1|1199709_1200816_+|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	43.9	2.0e-76
WP_001085185.1|1201368_1201833_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_001050064.1|1201854_1204227_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.2	2.7e-94
1202841:1202856	attR	CAACTGTTTCATTTGC	NA	NA	NA	NA
WP_001165952.1|1204260_1205001_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_000556760.1|1205116_1205350_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785252.1|1205416_1205875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|1206214_1207519_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 97
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1216576	1222395	2804820		Streptococcus_phage(40.0%)	5	NA	NA
WP_001049165.1|1216576_1217164_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
WP_000006551.1|1217736_1218681_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001248939.1|1218790_1219786_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000369722.1|1219782_1220694_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_000134963.1|1221459_1222395_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
>prophage 98
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1226785	1229632	2804820		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662681.1|1226785_1229632_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.1	0.0e+00
>prophage 99
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1232950	1233790	2804820		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000749380.1|1232950_1233790_-	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 100
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1239868	1245579	2804820		Streptococcus_phage(66.67%)	5	NA	NA
WP_001548033.1|1239868_1240951_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.2	1.3e-43
WP_000686342.1|1241314_1242181_-	DegV family protein	NA	NA	NA	NA	NA
WP_000192947.1|1242324_1242966_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	48.3	4.0e-37
WP_000258151.1|1243135_1244191_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000460983.1|1244508_1245579_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
>prophage 101
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1254861	1278312	2804820		uncultured_Caudovirales_phage(35.71%)	19	NA	NA
WP_000616842.1|1254861_1255623_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
WP_001245579.1|1255619_1256576_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876321.1|1256562_1257534_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	2.1e-138
WP_000499195.1|1257572_1257728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|1258129_1259101_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|1259218_1261324_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1261286_1261685_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|1262485_1263352_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1263371_1263872_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|1264212_1265718_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_001790641.1|1265795_1265897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150029189.1|1265987_1266905_+	YegS/Rv2252/BmrU family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	4.8e-07
WP_000197271.1|1267527_1268070_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663022.1|1268420_1269479_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.1e-20
WP_000180991.1|1269718_1271233_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000589260.1|1271225_1272203_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	5.4e-25
WP_000983677.1|1272424_1274206_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_000525111.1|1274217_1276101_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	2.0e-55
WP_000098285.1|1276371_1278312_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
>prophage 102
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1281451	1291297	2804820		Pandoravirus(12.5%)	12	NA	NA
WP_001217785.1|1281451_1282603_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
WP_000604514.1|1282586_1283180_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|1283530_1284199_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|1284200_1284620_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|1284623_1285337_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|1285435_1286020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093553.1|1286299_1286740_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1287081_1287555_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1287529_1288216_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244412.1|1288215_1289271_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000702782.1|1289342_1290326_-	lipoteichoic acid-specific glycosylation protein CsbB	NA	A0A192Y8W7	Salmonella_phage	43.3	1.5e-62
WP_000931237.1|1290457_1291297_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.3	5.1e-56
>prophage 103
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1302909	1304283	2804820		Bandra_megavirus(100.0%)	1	NA	NA
WP_000952048.1|1302909_1304283_-	deoxyribodipyrimidine photo-lyase	NA	A0A2K9V7Z5	Bandra_megavirus	29.2	5.6e-44
>prophage 104
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1309260	1315540	2804820		Bacillus_phage(33.33%)	6	NA	NA
WP_000857602.1|1309260_1310934_-	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	22.9	4.5e-11
WP_000737143.1|1310930_1312562_-	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	27.8	6.7e-12
WP_000469890.1|1312780_1313656_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000358498.1|1313827_1314511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000148828.1|1314513_1314972_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000820892.1|1314973_1315540_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	6.1e-21
>prophage 105
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1322468	1322942	2804820		Pandoravirus(100.0%)	1	NA	NA
WP_000833483.1|1322468_1322942_-	cupin domain-containing protein	NA	A0A291AU44	Pandoravirus	39.4	2.1e-14
>prophage 106
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1328204	1329002	2804820		Bacillus_phage(100.0%)	1	NA	NA
WP_000731644.1|1328204_1329002_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.2	1.2e-06
>prophage 107
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1333833	1334595	2804820		Planktothrix_phage(100.0%)	1	NA	NA
WP_000985996.1|1333833_1334595_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	7.2e-33
>prophage 108
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1338969	1340013	2804820		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_001030771.1|1338969_1340013_-	alpha/beta hydrolase	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	26.6	2.0e-17
>prophage 109
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1346535	1347333	2804820		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|1346535_1347333_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 110
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1350560	1354519	2804820		Bacillus_phage(33.33%)	3	NA	NA
WP_000817954.1|1350560_1352288_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
WP_000793070.1|1352708_1354004_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	2.0e-14
WP_000832260.1|1354120_1354519_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
>prophage 111
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1361453	1362197	2804820		Indivirus(100.0%)	1	NA	NA
WP_000894464.1|1361453_1362197_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
>prophage 112
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1373348	1373909	2804820	integrase	Streptococcus_phage(100.0%)	1	1367502:1367516	1377498:1377512
1367502:1367516	attL	TTTTGATACCATTTC	NA	NA	NA	NA
WP_001044915.1|1373348_1373909_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
WP_001044915.1|1373348_1373909_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
1377498:1377512	attR	TTTTGATACCATTTC	NA	NA	NA	NA
>prophage 113
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1386914	1390268	2804820		Tupanvirus(50.0%)	3	NA	NA
WP_001200748.1|1386914_1387925_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	5.6e-33
WP_001788287.1|1388423_1388945_-	YwhD family protein	NA	NA	NA	NA	NA
WP_000180230.1|1388972_1390268_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	2.1e-24
>prophage 114
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1403818	1405141	2804820		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860582.1|1403818_1405141_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.3	2.2e-109
>prophage 115
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1416446	1417103	2804820		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455256.1|1416446_1417103_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	1.1e-45
>prophage 116
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1420744	1424065	2804820		Staphylococcus_phage(50.0%)	2	NA	NA
WP_001100835.1|1420744_1422121_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.5	3.9e-21
WP_000347061.1|1422664_1424065_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	9.4e-55
>prophage 117
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1447563	1448226	2804820		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067262.1|1447563_1448226_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.4e-24
>prophage 118
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1454804	1455992	2804820		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250824.1|1454804_1455992_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	7.5e-45
>prophage 119
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1459020	1469974	2804820		Streptococcus_phage(33.33%)	6	NA	NA
WP_000090315.1|1459020_1461102_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
WP_001137495.1|1461224_1461695_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_001142337.1|1461760_1462174_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000031892.1|1462271_1462526_-	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA	NA
WP_001788197.1|1462662_1466259_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	3.3e-67
WP_000918667.1|1466422_1469974_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.3	2.1e-50
>prophage 120
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1473657	1478440	2804820	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_001288302.1|1473657_1474206_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
WP_001074473.1|1474218_1474401_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001788193.1|1474456_1474600_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000872873.1|1474714_1475284_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000664738.1|1475364_1475889_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000390328.1|1475888_1476635_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000370182.1|1476642_1477047_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000631963.1|1477039_1478440_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	32.0	3.2e-55
>prophage 121
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1484451	1486908	2804820	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897132.1|1484451_1486908_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	41.2	1.4e-133
>prophage 122
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1505716	1515988	2804820	tRNA	Catovirus(16.67%)	10	NA	NA
WP_001288202.1|1505716_1507204_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
WP_001790128.1|1507256_1507349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613716.1|1507742_1508219_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001154302.1|1508215_1508581_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000167924.1|1508558_1509362_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.3	1.3e-21
WP_000057594.1|1509577_1510510_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000148605.1|1510688_1511570_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_001167888.1|1511798_1513892_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000551283.1|1514148_1514688_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001176715.1|1514692_1515988_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.5	4.8e-13
>prophage 123
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1525244	1527709	2804820		Hokovirus(50.0%)	2	NA	NA
WP_000933774.1|1525244_1526210_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
WP_150029193.1|1526356_1527709_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.0	5.4e-23
>prophage 124
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1533591	1536689	2804820	tRNA	Klosneuvirus(50.0%)	2	NA	NA
WP_001051116.1|1533591_1535565_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.0	1.2e-92
WP_000279926.1|1535849_1536689_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.8	2.7e-57
>prophage 125
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1540595	1541213	2804820		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272126.1|1540595_1541213_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 126
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1550068	1551766	2804820		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109047.1|1550068_1551766_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.9e-54
>prophage 127
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1568413	1574651	2804820		Lactobacillus_phage(33.33%)	6	NA	NA
WP_001170264.1|1568413_1569418_-	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.2	1.6e-24
WP_000825521.1|1569749_1570592_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_000467994.1|1570628_1571288_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569286.1|1571291_1572317_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	8.2e-32
WP_001036663.1|1572610_1573753_-	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA	NA
WP_000634105.1|1573736_1574651_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.7	6.6e-49
>prophage 128
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1600025	1602786	2804820		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000072584.1|1600025_1601237_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.2	2.2e-44
WP_000028628.1|1601229_1602786_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	6.8e-288
>prophage 129
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1615197	1620647	2804820	transposase	Paenibacillus_phage(25.0%)	5	NA	NA
WP_000159787.1|1615197_1615470_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	1.3e-13
WP_000041883.1|1615868_1616573_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.6	2.6e-29
WP_000551776.1|1616965_1617502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424966.1|1617614_1619156_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000264071.1|1619180_1620647_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 130
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1629607	1631131	2804820		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930486.1|1629607_1631131_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.9e-40
>prophage 131
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1639987	1661466	2804820	terminase,integrase,coat	Staphylococcus_phage(80.95%)	31	1639105:1639119	1654199:1654213
1639105:1639119	attL	AAATTATATATTATT	NA	NA	NA	NA
WP_001286805.1|1639987_1640173_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000139423.1|1640174_1640285_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001795626.1|1640355_1640508_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_000801979.1|1641355_1642324_-	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_096391854.1|1642600_1643170_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.2	9.6e-99
WP_000358778.1|1643166_1643508_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_000771356.1|1643510_1644038_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	1.2e-87
WP_000448775.1|1644088_1644307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846292.1|1644324_1644903_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	39.5	1.6e-29
WP_001161659.1|1644914_1645256_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	96.5	2.1e-56
WP_001019770.1|1645602_1646244_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	1.8e-109
WP_001149387.1|1646245_1646518_-	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	100.0	3.2e-44
WP_000148371.1|1646504_1647308_-	bifunctional DNA primase/polymerase	NA	Q4ZE69	Staphylococcus_phage	97.8	2.1e-152
WP_033854769.1|1647478_1649092_-	hypothetical protein	NA	A0A1W6JPF4	Staphylococcus_phage	77.4	5.1e-246
WP_031904328.1|1649166_1649466_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	55.7	1.1e-18
WP_001060744.1|1649468_1649678_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	92.8	1.3e-29
WP_000784888.1|1649670_1649817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001663084.1|1649828_1650101_-	hypothetical protein	NA	Q4ZE77	Staphylococcus_phage	84.9	2.7e-35
WP_000608987.1|1650133_1650346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000700230.1|1650490_1651186_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001101554.1|1651311_1651833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000270122.1|1652126_1653344_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	95.2	5.4e-216
WP_000897044.1|1654838_1655081_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
1654199:1654213	attR	AAATTATATATTATT	NA	NA	NA	NA
WP_000934799.1|1655132_1655636_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1655656_1655953_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052483.1|1656196_1656388_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001218732.1|1656473_1657571_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000157345.1|1657582_1657786_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_001077602.1|1657815_1658697_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_001550052.1|1658853_1659699_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000655692.1|1660362_1661466_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.0	3.9e-11
>prophage 132
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1671384	1672227	2804820		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209565.1|1671384_1672227_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.2	7.7e-12
>prophage 133
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1693439	1696174	2804820		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_000280803.1|1693439_1694462_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	29.7	1.1e-09
WP_001191946.1|1694439_1695384_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000449060.1|1695373_1696174_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	43.9	8.9e-42
>prophage 134
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1714405	1715083	2804820		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911019.1|1714405_1715083_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	9.2e-32
>prophage 135
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1731118	1735558	2804820		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000549278.1|1731118_1735558_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	24.3	8.2e-28
>prophage 136
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1747521	1749183	2804820		Amsacta_moorei_entomopoxvirus(50.0%)	2	NA	NA
WP_000570071.1|1747521_1748181_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	37.2	7.6e-23
WP_000736798.1|1748232_1749183_-	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
>prophage 137
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1758473	1759910	2804820		Pandoravirus(100.0%)	1	NA	NA
WP_000163988.1|1758473_1759910_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.8	3.7e-30
>prophage 138
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1763670	1768210	2804820		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000950281.1|1763670_1765425_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	9.0e-63
WP_000608826.1|1765671_1766346_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000975357.1|1766485_1768210_-	poly(ribitol-phosphate) beta-N-acetylglucosaminyltransferase	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
>prophage 139
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1777537	1778581	2804820		Synechococcus_phage(100.0%)	1	NA	NA
WP_000645604.1|1777537_1778581_-	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.6	4.6e-14
>prophage 140
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1785796	1787326	2804820		Vibrio_phage(100.0%)	1	NA	NA
WP_000838204.1|1785796_1787326_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	52.0	5.3e-11
>prophage 141
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1796201	1797707	2804820		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008401.1|1796201_1797707_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	3.5e-39
>prophage 142
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1808697	1814056	2804820		Tetraselmis_virus(50.0%)	3	NA	NA
WP_000894660.1|1808697_1810947_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
WP_000837105.1|1811534_1812503_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000127982.1|1812499_1814056_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
>prophage 143
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1824265	1826324	2804820		Planktothrix_phage(50.0%)	2	NA	NA
WP_000818914.1|1824265_1825363_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
WP_000166917.1|1825745_1826324_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.4	9.7e-14
>prophage 144
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1834859	1836452	2804820		Bacillus_virus(100.0%)	1	NA	NA
WP_000067349.1|1834859_1836452_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	6.4e-15
>prophage 145
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1854612	1855797	2804820		Klosneuvirus(100.0%)	1	NA	NA
WP_001084436.1|1854612_1855797_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.2	9.2e-35
>prophage 146
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1860633	1870917	2804820		Tupanvirus(50.0%)	3	NA	NA
WP_000605282.1|1860633_1867809_-	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	29.5	1.0e-67
WP_000826862.1|1868255_1869506_-	MFS transporter	NA	NA	NA	NA	NA
WP_000706137.1|1869891_1870917_-	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.9	2.9e-29
>prophage 147
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1874455	1877453	2804820		Bacillus_virus(50.0%)	4	NA	NA
WP_000590853.1|1874455_1875196_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	41.1	1.5e-38
WP_000171919.1|1875537_1876050_-	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000356963.1|1876228_1876432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013484.1|1876493_1877453_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
>prophage 148
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1880808	1883293	2804820		Catovirus(50.0%)	2	NA	NA
WP_000723454.1|1880808_1881954_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.4	2.4e-24
WP_000779497.1|1882030_1883293_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	26.0	6.6e-23
>prophage 149
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1890128	1896693	2804820		Catovirus(50.0%)	6	NA	NA
WP_000413171.1|1890128_1891253_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	6.7e-128
WP_001028293.1|1891256_1892366_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000459054.1|1892378_1893407_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.0	3.3e-41
WP_000940792.1|1893396_1895220_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.1	4.0e-29
WP_000565302.1|1895239_1896004_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000037332.1|1896006_1896693_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	3.7e-28
>prophage 150
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1901001	1901211	2804820	transposase	Lactococcus_phage(100.0%)	1	NA	NA
WP_077442727.1|1901001_1901211_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	41.8	7.0e-07
>prophage 151
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1907974	1911028	2804820	transposase	Staphylococcus_phage(50.0%)	4	NA	NA
WP_000078092.1|1907974_1908748_+	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	3.8e-13
WP_001127689.1|1908749_1909550_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_000191092.1|1909546_1910362_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_000093392.1|1910542_1911028_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
>prophage 152
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1917525	1918125	2804820		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|1917525_1918125_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 153
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1923062	1924043	2804820		Catovirus(100.0%)	1	NA	NA
WP_001789408.1|1923062_1924043_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.0	1.0e-47
>prophage 154
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1927413	1928616	2804820		Tupanvirus(100.0%)	1	NA	NA
WP_001223700.1|1927413_1928616_-	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	20.8	1.1e-08
>prophage 155
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1936882	1941092	2804820		Lactococcus_phage(50.0%)	4	NA	NA
WP_000570808.1|1936882_1937863_-	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.6	2.1e-40
WP_001045111.1|1938093_1939086_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000924997.1|1939101_1940097_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_000136636.1|1940093_1941092_+	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.5	1.2e-14
>prophage 156
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1978143	1979211	2804820		Staphylococcus_phage(100.0%)	1	NA	NA
WP_150029208.1|1978143_1979211_-	persulfide response sulfurtransferase CstA	NA	A0A2H4PQR9	Staphylococcus_phage	41.5	3.5e-09
>prophage 157
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	1993281	1996281	2804820		Bacillus_phage(100.0%)	2	NA	NA
WP_000815640.1|1993281_1994631_+	recombinase family protein	NA	Q9T200	Bacillus_phage	24.8	1.4e-18
WP_001186608.1|1994652_1996281_+	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	31.4	5.4e-46
>prophage 158
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2005701	2006376	2804820	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_001106057.1|2005701_2006376_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
>prophage 159
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2012032	2022046	2804820		Bacillus_phage(40.0%)	7	NA	NA
WP_000088648.1|2012032_2012833_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	4.6e-38
WP_001104172.1|2013222_2014011_-	two-component system regulatory protein YycI	NA	NA	NA	NA	NA
WP_001060154.1|2014011_2015346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000871607.1|2015338_2017165_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_000101976.1|2017177_2017879_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000095327.1|2019084_2020368_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	2.3e-68
WP_000375647.1|2020645_2022046_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
>prophage 160
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2028733	2037772	2804820	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000884334.1|2028733_2030020_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
WP_000177464.1|2030398_2031913_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.6	6.8e-91
WP_000449218.1|2032238_2033051_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000819084.1|2033137_2035801_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.9	2.7e-119
WP_000255584.1|2035837_2037772_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	4.4e-143
>prophage 161
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2047854	2051119	2804820		Faecalibacterium_phage(33.33%)	5	NA	NA
WP_000742837.1|2047854_2048694_+	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
WP_000491382.1|2049146_2049500_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000779136.1|2049567_2049963_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_001054118.1|2050222_2050792_+	helix-turn-helix domain-containing protein	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_001059079.1|2050918_2051119_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
>prophage 162
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2055419	2056178	2804820		Planktothrix_phage(100.0%)	1	NA	NA
WP_000154162.1|2055419_2056178_-	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 163
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2070435	2072148	2804820		Planktothrix_phage(100.0%)	1	NA	NA
WP_000138642.1|2070435_2072148_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	1.4e-20
>prophage 164
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2077777	2078791	2804820		Faustovirus(100.0%)	1	NA	NA
WP_000639183.1|2077777_2078791_+	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	22.2	2.1e-08
>prophage 165
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2091131	2091824	2804820		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185864.1|2091131_2091824_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	1.7e-28
>prophage 166
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2117925	2119785	2804820		Enterococcus_phage(100.0%)	1	NA	NA
WP_001125611.1|2117925_2119785_-	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	9.7e-15
>prophage 167
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2145505	2147256	2804820		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
WP_000143419.1|2145505_2146393_+	nisin susceptibility-associated two-component system sensor histidine kinase NsaS	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	2.5e-05
WP_000923760.1|2146500_2147256_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	3.0e-31
>prophage 168
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2150676	2151174	2804820		Canarypox_virus(100.0%)	1	NA	NA
WP_001065268.1|2150676_2151174_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	1.8e-21
>prophage 169
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2156226	2158610	2804820		Enterococcus_phage(100.0%)	2	NA	NA
WP_001071717.1|2156226_2158077_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	1.2e-235
WP_000601724.1|2158073_2158610_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	49.4	8.6e-41
>prophage 170
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2164455	2174569	2804820	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000066521.1|2164455_2166165_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	3.8e-58
WP_000011688.1|2166442_2166655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000708242.1|2166935_2167379_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_001172343.1|2167572_2169171_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	36.6	3.4e-77
WP_001791775.1|2169230_2169560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001130051.1|2169855_2171352_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001031413.1|2171544_2172435_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	28.6	1.0e-06
WP_001237629.1|2172557_2172974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000030057.1|2173231_2174569_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	1.0e-18
>prophage 171
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2202705	2206493	2804820		Staphylococcus_phage(50.0%)	3	NA	NA
WP_000751267.1|2202705_2203407_+	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	4.0e-38
WP_000996736.1|2203682_2204171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000379821.1|2204681_2206493_+	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
>prophage 172
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2214926	2218782	2804820		Paramecium_bursaria_Chlorella_virus(50.0%)	3	NA	NA
WP_000161357.1|2214926_2215925_+	D-lactate dehydrogenase	NA	M1H502	Paramecium_bursaria_Chlorella_virus	33.0	2.6e-35
WP_000076661.1|2216014_2216221_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000024127.1|2216373_2218782_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	41.0	4.9e-128
>prophage 173
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2228023	2231059	2804820	protease	Enterobacteria_phage(50.0%)	2	NA	NA
WP_001058988.1|2228023_2230129_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpL	protease	H6X3M6	Enterobacteria_phage	38.5	3.1e-118
WP_000455987.1|2230537_2231059_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	41.1	2.0e-26
>prophage 174
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2238942	2245326	2804820		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
WP_001062658.1|2238942_2240682_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.3	2.7e-35
WP_000473675.1|2240982_2243049_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000206033.1|2243428_2243839_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000240662.1|2243880_2244225_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001228162.1|2244357_2245326_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	5.2e-12
>prophage 175
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2254912	2255905	2804820		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161538.1|2254912_2255905_-	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	31.9	3.1e-36
>prophage 176
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2265185	2265881	2804820		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000382904.1|2265185_2265881_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	38.0	3.0e-38
>prophage 177
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2286263	2287130	2804820		Bacillus_phage(100.0%)	1	NA	NA
WP_000721336.1|2286263_2287130_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.6	1.3e-78
>prophage 178
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2294930	2300111	2804820		Streptococcus_phage(50.0%)	3	NA	NA
WP_001795457.1|2294930_2296739_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	38.1	1.9e-95
WP_000755954.1|2296855_2297248_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000088722.1|2297249_2300111_+	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	2.4e-28
>prophage 179
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2306934	2307630	2804820		Bacillus_phage(100.0%)	1	NA	NA
WP_000217466.1|2306934_2307630_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	36.5	8.6e-09
>prophage 180
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2320991	2322549	2804820		Planktothrix_phage(50.0%)	2	NA	NA
WP_000173869.1|2320991_2321807_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.3	1.8e-13
WP_000590516.1|2321799_2322549_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.4	5.3e-20
>prophage 181
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2329682	2334111	2804820		Organic_Lake_phycodnavirus(50.0%)	4	NA	NA
WP_000923520.1|2329682_2330345_+	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	32.2	6.5e-22
WP_000072147.1|2330337_2331114_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000026194.1|2331509_2332697_+	MFS transporter	NA	NA	NA	NA	NA
WP_000700921.1|2332758_2334111_-	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	34.2	2.5e-12
>prophage 182
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2337804	2339663	2804820		Mycoplasma_phage(50.0%)	2	NA	NA
WP_000948981.1|2337804_2339031_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
WP_000569120.1|2339027_2339663_+	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	26.2	9.0e-05
>prophage 183
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2357390	2363576	2804820		Bacillus_phage(66.67%)	5	NA	NA
WP_001176862.1|2357390_2358533_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	44.3	1.2e-55
WP_000779358.1|2358800_2359187_+	flippase GtxA	NA	NA	NA	NA	NA
WP_000482650.1|2359319_2359427_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001064838.1|2360054_2361818_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.9	1.5e-36
WP_000486494.1|2361842_2363576_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.7	9.0e-31
>prophage 184
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2367036	2372808	2804820		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000671751.1|2367036_2368152_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	24.7	1.6e-20
WP_000286875.1|2368162_2368855_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000200948.1|2368865_2369333_+	QueT transporter family protein	NA	NA	NA	NA	NA
WP_000783428.1|2369384_2370362_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	7.1e-142
WP_000916713.1|2370363_2371311_-	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	77.1	1.2e-138
WP_000594519.1|2371878_2372808_-	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.1	3.2e-120
>prophage 185
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2380752	2381484	2804820		Bacillus_virus(100.0%)	1	NA	NA
WP_000615461.1|2380752_2381484_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.7	4.1e-25
>prophage 186
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2398136	2399696	2804820		Escherichia_phage(100.0%)	1	NA	NA
WP_000692645.1|2398136_2399696_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 187
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2421114	2422149	2804820		Bacillus_virus(100.0%)	1	NA	NA
WP_000655971.1|2421114_2422149_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.6	5.8e-17
>prophage 188
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2432008	2435905	2804820		Hokovirus(33.33%)	4	NA	NA
WP_000477329.1|2432008_2433382_-	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.8	1.3e-13
WP_000249497.1|2433374_2434049_-	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	45.2	3.6e-52
WP_000761395.1|2434184_2435240_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001229911.1|2435239_2435905_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	1.2e-36
>prophage 189
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2440484	2441693	2804820		Salmonella_phage(100.0%)	1	NA	NA
WP_000999131.1|2440484_2441693_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.3	3.9e-33
>prophage 190
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2453814	2454714	2804820		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524836.1|2453814_2454714_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.2	4.2e-16
>prophage 191
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2462086	2462506	2804820		Bacillus_phage(100.0%)	1	NA	NA
WP_000920239.1|2462086_2462506_-	FosB1/FosB3 family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	61.9	2.6e-37
>prophage 192
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2468199	2469081	2804820		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000730043.1|2468199_2469081_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	2.2e-62
>prophage 193
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2476959	2477595	2804820		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285450.1|2476959_2477595_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	1.6e-09
>prophage 194
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2491021	2495139	2804820		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000739224.1|2491021_2491798_+	glucosaminidase domain-containing protein	NA	H9A0P7	Staphylococcus_phage	41.0	3.8e-37
WP_000684141.1|2492108_2493233_+	FAD-dependent monooxygenase	NA	A0A2K9L3K5	Tupanvirus	22.8	5.5e-13
WP_000417016.1|2493323_2494277_-	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	28.9	2.9e-31
WP_000737705.1|2494638_2495139_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
>prophage 195
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2499055	2499859	2804820		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717381.1|2499055_2499859_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.3e-07
>prophage 196
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2518837	2519443	2804820		Pithovirus(100.0%)	1	NA	NA
WP_000913019.1|2518837_2519443_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.6	3.8e-13
>prophage 197
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2531527	2534695	2804820		Leptospira_phage(100.0%)	1	NA	NA
WP_000592303.1|2531527_2534695_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.8	6.2e-62
>prophage 198
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2558158	2559825	2804820		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_000389662.1|2558158_2558968_+	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.0	2.2e-19
WP_000155386.1|2558964_2559825_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	9.7e-10
>prophage 199
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2565254	2574484	2804820	protease	Vibrio_phage(33.33%)	9	NA	NA
WP_000402465.1|2565254_2566391_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A2I7SAX5	Vibrio_phage	27.0	5.4e-08
WP_001549616.1|2566519_2567926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000655244.1|2568479_2568662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001797632.1|2568643_2568883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000130150.1|2569115_2570780_+	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.7	4.0e-44
WP_000186134.1|2570816_2571521_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_001549607.1|2571884_2572310_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000044363.1|2572603_2573419_+	HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_001044432.1|2573629_2574484_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	41.4	3.4e-07
>prophage 200
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2577860	2580955	2804820		Staphylococcus_phage(50.0%)	5	NA	NA
WP_001015500.1|2577860_2578709_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	39.2	2.0e-44
WP_001549596.1|2578928_2579054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000333465.1|2579315_2579924_+	DUF3885 domain-containing protein	NA	NA	NA	NA	NA
WP_001791678.1|2580016_2580178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549592.1|2580214_2580955_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	29.4	7.3e-14
>prophage 201
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2587276	2588689	2804820		Pandoravirus(100.0%)	1	NA	NA
WP_000169220.1|2587276_2588689_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	5.0e-48
>prophage 202
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2592649	2594212	2804820		Vibrio_phage(100.0%)	1	NA	NA
WP_000792334.1|2592649_2594212_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	25.2	1.2e-18
>prophage 203
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2606369	2607338	2804820		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989098.1|2606369_2607338_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 204
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2624867	2625776	2804820		Klosneuvirus(100.0%)	1	NA	NA
WP_000167867.1|2624867_2625776_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.0	3.2e-27
>prophage 205
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2629366	2636803	2804820		Staphylococcus_phage(100.0%)	1	NA	NA
WP_117231745.1|2629366_2636803_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	23.5	3.4e-18
>prophage 206
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2643059	2645879	2804820		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_000334465.1|2643059_2644865_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.6	2.0e-97
WP_000908177.1|2645096_2645879_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.1	1.7e-08
>prophage 207
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2658485	2662317	2804820		Clostridium_phage(50.0%)	4	NA	NA
WP_000070866.1|2658485_2658929_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
WP_000160304.1|2659049_2659760_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001083311.1|2660074_2660737_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_001242318.1|2661015_2662317_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.9	2.7e-133
>prophage 208
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2670255	2671866	2804820		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159960.1|2670255_2671866_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.7e-146
>prophage 209
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2679669	2687419	2804820		Bacillus_virus(25.0%)	9	NA	NA
WP_000273356.1|2679669_2680269_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
WP_000460242.1|2680269_2681346_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000248735.1|2681332_2682169_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_000379888.1|2682252_2683299_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.6	7.5e-41
WP_000697334.1|2683295_2683715_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_000654185.1|2683821_2684346_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_000120494.1|2684372_2685611_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
WP_000048712.1|2685638_2686268_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000723418.1|2686291_2687419_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	29.9	1.0e-27
>prophage 210
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2697824	2698220	2804820		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000932694.1|2697824_2698220_+	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	1.3e-14
>prophage 211
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2704390	2705038	2804820		Moumouvirus(100.0%)	1	NA	NA
WP_001187629.1|2704390_2705038_-	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.0	6.1e-09
>prophage 212
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2712238	2713759	2804820		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178942.1|2712238_2713759_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 213
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2719446	2721474	2804820		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546584.1|2719446_2721474_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.1	5.6e-24
>prophage 214
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2726624	2730009	2804820		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_000621175.1|2726624_2726987_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
WP_000390829.1|2727336_2728338_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_001052491.1|2728456_2728783_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_001190829.1|2728784_2729264_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001041103.1|2729238_2730009_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
>prophage 215
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2743692	2748416	2804820		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_000094576.1|2743692_2745222_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
WP_000214557.1|2745251_2746256_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000196911.1|2746392_2746647_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_000047820.1|2746646_2748416_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.1	5.3e-63
>prophage 216
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2752176	2766022	2804820	tRNA	Moraxella_phage(16.67%)	13	NA	NA
WP_000159034.1|2752176_2753202_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.9	6.9e-63
WP_000106330.1|2753303_2754914_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.9	3.3e-19
WP_001790685.1|2755002_2755131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000602074.1|2755275_2757204_-	ABC-F type ribosomal protection protein	NA	A0A2K9L0W2	Tupanvirus	30.4	2.4e-53
WP_001283612.1|2757456_2758092_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_172621358.1|2758395_2759475_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581077.1|2759534_2759759_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001052270.1|2759966_2761217_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	4.5e-40
WP_000790330.1|2761399_2762350_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000141414.1|2762498_2763983_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.6	4.0e-19
WP_001253312.1|2763979_2764939_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_001790167.1|2765126_2765234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000688492.1|2765305_2766022_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
>prophage 217
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2773123	2776601	2804820	terminase	uncultured_virus(50.0%)	4	NA	NA
WP_000917289.1|2773123_2773408_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240645.1|2773483_2775100_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000128898.1|2775801_2776014_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_001293058.1|2776010_2776601_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
>prophage 218
NZ_AP020311	Staphylococcus aureus strain KUH140013	2804820	2784073	2804350	2804820	integrase	Staphylococcus_phage(97.3%)	38	2786916:2786930	2795842:2795856
WP_000791407.1|2784073_2785129_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595324.1|2785150_2786167_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2786916:2786930	attL	CTATCATTATCGAAT	NA	NA	NA	NA
WP_000857191.1|2787285_2788323_-|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000825947.1|2788381_2788846_-	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000705248.1|2788945_2789128_-	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000591750.1|2789331_2789673_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	99.1	8.7e-55
WP_000759682.1|2789678_2790611_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|2790626_2791340_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_001801500.1|2791302_2791476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000854072.1|2791472_2791736_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001025404.1|2791751_2791967_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000128907.1|2791955_2792285_-	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001148605.1|2792335_2793088_+	phage antirepressor KilAC domain-containing protein	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_001148862.1|2793103_2793301_+	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_000762521.1|2793287_2793668_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001120201.1|2793722_2794046_+	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000048129.1|2794042_2794204_+	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_000165371.1|2794298_2794601_+	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000291510.1|2794605_2794866_+	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_001205732.1|2794874_2795138_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700555.1|2795146_2797090_+	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
2795842:2795856	attR	ATTCGATAATGATAG	NA	NA	NA	NA
WP_000138475.1|2797091_2798012_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_071665632.1|2798092_2798710_+	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000934760.1|2798710_2799181_+	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	99.4	7.4e-81
WP_000148321.1|2799210_2800104_+	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
WP_000338530.1|2800110_2800329_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401960.1|2800337_2800742_+	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000101288.1|2800754_2801123_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000131370.1|2801126_2801369_+	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_001065094.1|2801383_2801632_+	DUF1024 family protein	NA	A0A075LYF1	Staphylococcus_phage	97.6	4.1e-38
WP_001066447.1|2801624_2802161_+	dUTP diphosphatase	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_001282074.1|2802197_2802443_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195803.1|2802439_2802646_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|2802642_2803029_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000595265.1|2803025_2803175_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000265043.1|2803174_2803375_+	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000590122.1|2803402_2803819_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|2804050_2804350_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
