assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008632455.1_ASM863245v1	NZ_CP043929	Methylomonas sp. GJ1 chromosome, complete genome	1	1494053-1499428	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	cas3,RT,DinG,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas2,csx1,csx16,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh,csb2gr5,cas7,cas8u2	Type I-F	GTCCGCCGCCGCACAGGCGGCTTAGAAA,GTCCGCCGCCGCACAGGCGGCTTAGAAA,GTCCGCCGCCGCACAGGCGGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	89,89,66	89	TypeI-F	cas3,RT,DinG,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas2,csx1,csx16,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh,csb2gr5,cas7,cas8u2	NA,NA	cas1|315aa|up_9|NZ_CP043929.1_1483816_1484761_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1105aa|up_8|NZ_CP043929.1_1484873_1488188_+	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	NA|141aa|up_7|NZ_CP043929.1_1488204_1488627_-	cd18683, PIN_VapC-like, Uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily	NA|85aa|up_6|NZ_CP043929.1_1488613_1488868_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|164aa|up_5|NZ_CP043929.1_1488944_1489436_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|96aa|up_4|NZ_CP043929.1_1489425_1489713_-	pfam08681, DUF1778, Protein of unknown function (DUF1778)	cas8f|413aa|up_3|NZ_CP043929.1_1490021_1491260_+	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas5f|293aa|up_2|NZ_CP043929.1_1491256_1492135_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|376aa|up_1|NZ_CP043929.1_1492151_1493279_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|213aa|up_0|NZ_CP043929.1_1493282_1493921_+	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	NA|183aa|down_0|NZ_CP043929.1_1499548_1500097_-	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|295aa|down_1|NZ_CP043929.1_1500096_1500981_-	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|299aa|down_2|NZ_CP043929.1_1500983_1501880_-	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional	NA|356aa|down_3|NZ_CP043929.1_1501884_1502952_-	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]	NA|229aa|down_4|NZ_CP043929.1_1502982_1503669_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|545aa|down_5|NZ_CP043929.1_1503665_1505300_-	cd17589, REC_TPR, phosphoacceptor receiver (REC) domain of uncharacterized tetratricopeptide repeat (TPR)-containing response regulators	NA|385aa|down_6|NZ_CP043929.1_1505361_1506516_-	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed	NA|252aa|down_7|NZ_CP043929.1_1506540_1507296_-	smart00237, Calx_beta, Domains in Na-Ca exchangers and integrin-beta4	NA|365aa|down_8|NZ_CP043929.1_1507335_1508430_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|313aa|down_9|NZ_CP043929.1_1508441_1509380_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]
GCF_008632455.1_ASM863245v1	NZ_CP043929	Methylomonas sp. GJ1 chromosome, complete genome	2	1611787-1614417	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csx1,csx16,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	cas3,RT,DinG,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas2,csx1,csx16,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh,csb2gr5,cas7,cas8u2	Type III-A,Type III-B,Type III-C,Type III-D	GTCTTAATCCCTTCTTTATAAGGTCTGTTATTTAAAT,GTCTTAATCCCTTCTTTATAAGGTCTGTTATTTAAAT,GTCTTAATCCCTTCTTTATAAGGTCTGTTATTTAAAT	37,37,37	0	0	NA	NA	NA:NA:NA	37,37,17	37	TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	cas3,RT,DinG,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas2,csx1,csx16,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh,csb2gr5,cas7,cas8u2	NA|203aa|up_5|NZ_CP043929.1_1605587_1606196_+,NA	NA|233aa|up_9|NZ_CP043929.1_1602171_1602870_+	PRK08808, PRK08808, type II secretion system protein J	NA|335aa|up_8|NZ_CP043929.1_1602856_1603861_+	pfam03934, T2SSK, Type II secretion system (T2SS), protein K	NA|394aa|up_7|NZ_CP043929.1_1603838_1605020_+	pfam05137, PilN, Fimbrial assembly protein (PilN)	NA|193aa|up_6|NZ_CP043929.1_1605012_1605591_+	pfam10741, T2SSM_b, Type II secretion system (T2SS), protein M subtype b	NA|203aa|up_5|NZ_CP043929.1_1605587_1606196_+	NA	NA|782aa|up_4|NZ_CP043929.1_1606185_1608531_+	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	cas2|104aa|up_3|NZ_CP043929.1_1609354_1609666_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|248aa|up_2|NZ_CP043929.1_1609665_1610409_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas1|319aa|up_1|NZ_CP043929.1_1610408_1611365_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas2|95aa|up_0|NZ_CP043929.1_1611368_1611653_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	csx1|377aa|down_0|NZ_CP043929.1_1614490_1615621_-	pfam09002, DUF1887, Domain of unknown function (DUF1887)	NA|158aa|down_1|NZ_CP043929.1_1615728_1616202_-	pfam01797, Y1_Tnp, Transposase IS200 like	csx1|419aa|down_2|NZ_CP043929.1_1616251_1617508_-	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1	NA|85aa|down_3|NZ_CP043929.1_1617602_1617857_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|85aa|down_4|NZ_CP043929.1_1617853_1618108_-	PRK11409, PRK11409, YoeB-YefM toxin-antitoxin system antitoxin YefM	csx16|120aa|down_5|NZ_CP043929.1_1618214_1618574_-	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	csm5gr7|474aa|down_6|NZ_CP043929.1_1618576_1619998_-	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5	csm4gr5|319aa|down_7|NZ_CP043929.1_1620077_1621034_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|264aa|down_8|NZ_CP043929.1_1621035_1621827_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|126aa|down_9|NZ_CP043929.1_1621842_1622220_-	pfam03750, Csm2_III-A, Csm2 Type III-A
GCF_008632455.1_ASM863245v1	NZ_CP043929	Methylomonas sp. GJ1 chromosome, complete genome	3	2597956-2600098	3,3,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,csb2gr5,cas7,cas8u2,cas3,WYL	cas3,RT,DinG,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas2,csx1,csx16,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh,csb2gr5,cas7,cas8u2	Unclear	GCTTCAATGAGGCCCCGGCTGGTGGCCGGGGAAGGC,GCTTCAATGAGGCCCCGGCTGGTGGCCGGGGAAGGC,GCTTCAATGAGGCCCCGGCTGGTGGCCGGGGAAGGC	36,36,36	0	0	NA	NA	NA:NA:NA	29,28,28	29	Unclear	cas3,RT,DinG,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas2,csx1,csx16,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh,csb2gr5,cas7,cas8u2	NA|87aa|up_4|NZ_CP043929.1_2595798_2596059_-,NA|103aa|down_2|NZ_CP043929.1_2602670_2602979_+,NA|93aa|down_8|NZ_CP043929.1_2610341_2610620_+	NA|111aa|up_9|NZ_CP043929.1_2592044_2592377_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|568aa|up_8|NZ_CP043929.1_2592674_2594378_-	PRK13207, ureC, urease subunit alpha; Reviewed	NA|106aa|up_7|NZ_CP043929.1_2594374_2594692_-	PRK13203, ureB, urease subunit beta; Reviewed	NA|101aa|up_6|NZ_CP043929.1_2595040_2595343_-	PRK13241, ureA, urease subunit gamma; Provisional	NA|132aa|up_5|NZ_CP043929.1_2595406_2595802_-	cd09871, PIN_MtVapC28-VapC30-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC28 and 30 and related proteins	NA|87aa|up_4|NZ_CP043929.1_2595798_2596059_-	NA	NA|84aa|up_3|NZ_CP043929.1_2596175_2596427_+	PRK11409, PRK11409, YoeB-YefM toxin-antitoxin system antitoxin YefM	NA|87aa|up_2|NZ_CP043929.1_2596423_2596684_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|177aa|up_1|NZ_CP043929.1_2597129_2597660_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|62aa|up_0|NZ_CP043929.1_2597725_2597911_-	pfam18506, RelB_N, RelB Antitoxin alpha helical domain	cas2|99aa|down_0|NZ_CP043929.1_2600603_2600900_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|575aa|down_1|NZ_CP043929.1_2600899_2602624_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|103aa|down_2|NZ_CP043929.1_2602670_2602979_+	NA	NA|118aa|down_3|NZ_CP043929.1_2602966_2603320_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	csb2gr5|710aa|down_4|NZ_CP043929.1_2603325_2605455_-	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system	cas7|365aa|down_5|NZ_CP043929.1_2605458_2606553_-	cd09678, Csb1_I-U, CRISPR/Cas system-associated protein Csb1	cas8u2|319aa|down_6|NZ_CP043929.1_2606549_2607506_-	TIGR04106, hypothetical_protein_GobsU_11505, CRISPR-associated protein GSU0052/csb3, Dpsyc system	cas3|931aa|down_7|NZ_CP043929.1_2607400_2610193_-	cd09696, Cas3_I, CRISPR/Cas system-associated protein Cas3; Distinct Cas3 family with HD domain fused to C-termus of Helicase domain	NA|93aa|down_8|NZ_CP043929.1_2610341_2610620_+	NA	NA|94aa|down_9|NZ_CP043929.1_2610765_2611047_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]
GCF_008632455.1_ASM863245v1	NZ_CP043929	Methylomonas sp. GJ1 chromosome, complete genome	4	2909417-2910465	4,4,4	PILER-CR,CRISPRCasFinder,CRT	no		cas3,RT,DinG,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas2,csx1,csx16,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh,csb2gr5,cas7,cas8u2	Orphan	GTCCGCCGCCGCACAGGCGGCTTAGAAA,TTTCTAAGCCGCCTGTGCGGCGGCGGAC,TTTCTAAGCCGCCTGTGCGGCGGCGGAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	17,17,17	17	Orphan	cas3,RT,DinG,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas2,csx1,csx16,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DEDDh,csb2gr5,cas7,cas8u2	NA|93aa|up_8|NZ_CP043929.1_2900617_2900896_+,NA|83aa|up_7|NZ_CP043929.1_2901149_2901398_+,NA|130aa|up_6|NZ_CP043929.1_2902008_2902398_+,NA|171aa|up_5|NZ_CP043929.1_2902709_2903222_+,NA|78aa|up_4|NZ_CP043929.1_2903557_2903791_-,NA|234aa|up_3|NZ_CP043929.1_2904289_2904991_+,NA|313aa|down_5|NZ_CP043929.1_2917820_2918759_-,NA|615aa|down_6|NZ_CP043929.1_2919679_2921524_-,NA|1556aa|down_7|NZ_CP043929.1_2921555_2926223_-	NA|111aa|up_9|NZ_CP043929.1_2899692_2900025_+	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|93aa|up_8|NZ_CP043929.1_2900617_2900896_+	NA	NA|83aa|up_7|NZ_CP043929.1_2901149_2901398_+	NA	NA|130aa|up_6|NZ_CP043929.1_2902008_2902398_+	NA	NA|171aa|up_5|NZ_CP043929.1_2902709_2903222_+	NA	NA|78aa|up_4|NZ_CP043929.1_2903557_2903791_-	NA	NA|234aa|up_3|NZ_CP043929.1_2904289_2904991_+	NA	NA|585aa|up_2|NZ_CP043929.1_2905415_2907170_+	COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]	NA|327aa|up_1|NZ_CP043929.1_2907581_2908562_+	pfam14517, Tachylectin, Tachylectin	NA|215aa|up_0|NZ_CP043929.1_2908707_2909352_-	pfam11747, RebB, Killing trait	NA|363aa|down_0|NZ_CP043929.1_2910792_2911881_+	pfam05598, DUF772, Transposase domain (DUF772)	NA|669aa|down_1|NZ_CP043929.1_2912331_2914338_+	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I	NA|289aa|down_2|NZ_CP043929.1_2914405_2915272_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|283aa|down_3|NZ_CP043929.1_2915316_2916165_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|319aa|down_4|NZ_CP043929.1_2916769_2917726_+	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins	NA|313aa|down_5|NZ_CP043929.1_2917820_2918759_-	NA	NA|615aa|down_6|NZ_CP043929.1_2919679_2921524_-	NA	NA|1556aa|down_7|NZ_CP043929.1_2921555_2926223_-	NA	NA|436aa|down_8|NZ_CP043929.1_2926314_2927622_-	cd07731, ComA-like_MBL-fold, Competence protein ComA, ComEC and related proteins; MBL-fold metallo hydrolase domain	NA|754aa|down_9|NZ_CP043929.1_2927846_2930108_-	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily
