assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008693345.1_ASM869334v1	NZ_CP044031	Orientia tsutsugamushi strain Wuj/2014 chromosome, complete genome	1	351742-351995	1	PILER-CR	no	DEDDh	DEDDh,RT	Unclear	TGGAACATGCGAAGTACTAGCTTTTTGTTCGATAGAGTCGATTTTTAAAGGTG	53	0	0	NA	NA	NA	2	2	Orphan	DEDDh,RT	NA|110aa|up_9|NZ_CP044031.1_340394_340724_-,NA|112aa|up_6|NZ_CP044031.1_341252_341588_-,NA|228aa|down_3|NZ_CP044031.1_355372_356056_+,NA|510aa|down_4|NZ_CP044031.1_356298_357828_+,NA|287aa|down_7|NZ_CP044031.1_362794_363655_-	NA|110aa|up_9|NZ_CP044031.1_340394_340724_-	NA	NA|61aa|up_8|NZ_CP044031.1_340723_340906_-	cd16430, TraB, TraB is a homolog of VirB10 which forms part of core complex in Type IV secretion system (T4SS)	NA|106aa|up_7|NZ_CP044031.1_340935_341253_-	pfam05309, TraE, TraE protein	NA|112aa|up_6|NZ_CP044031.1_341252_341588_-	NA	NA|59aa|up_5|NZ_CP044031.1_341713_341890_-	cd01188, INT_RitA_C_like, C-terminal catalytic domain of recombinase RitA, a component of the recombinase trio	NA|1146aa|up_4|NZ_CP044031.1_343578_347016_-	cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose transporters and related proteins; solute-binding domain	DEDDh|223aa|up_3|NZ_CP044031.1_347769_348438_+	cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins	NA|170aa|up_2|NZ_CP044031.1_348656_349166_+	COG1329, COG1329, Transcriptional regulators, similar to M	NA|345aa|up_1|NZ_CP044031.1_349189_350224_+	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|264aa|up_0|NZ_CP044031.1_350240_351032_+	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed	NA|153aa|down_0|NZ_CP044031.1_352339_352798_-	TIGR02801, Protein_TolR, TolR protein	NA|230aa|down_1|NZ_CP044031.1_352803_353493_-	TIGR02796, Protein_TolQ, TolQ protein	NA|338aa|down_2|NZ_CP044031.1_353663_354677_+	PRK09283, PRK09283, porphobilinogen synthase	NA|228aa|down_3|NZ_CP044031.1_355372_356056_+	NA	NA|510aa|down_4|NZ_CP044031.1_356298_357828_+	NA	NA|368aa|down_5|NZ_CP044031.1_358146_359251_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|602aa|down_6|NZ_CP044031.1_359398_361204_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|287aa|down_7|NZ_CP044031.1_362794_363655_-	NA	NA|156aa|down_8|NZ_CP044031.1_363733_364201_-	PRK06341, PRK06341, single-stranded DNA-binding protein; Provisional	NA|161aa|down_9|NZ_CP044031.1_364469_364952_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain
GCF_008693345.1_ASM869334v1	NZ_CP044031	Orientia tsutsugamushi strain Wuj/2014 chromosome, complete genome	2	1077251-1077339	1	CRISPRCasFinder	no		DEDDh,RT	Orphan	AAGTTAAATCTAATCTAGAAACTGAGTTAAAA	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT	NA|98aa|up_6|NZ_CP044031.1_1060427_1060721_-,NA|1508aa|up_2|NZ_CP044031.1_1065782_1070306_+,NA|376aa|down_6|NZ_CP044031.1_1089899_1091027_-,NA|190aa|down_7|NZ_CP044031.1_1091480_1092050_-	NA|190aa|up_9|NZ_CP044031.1_1056955_1057525_-	PRK00529, PRK00529, elongation factor P; Validated	NA|418aa|up_8|NZ_CP044031.1_1057730_1058984_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|434aa|up_7|NZ_CP044031.1_1059111_1060413_-	PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional	NA|98aa|up_6|NZ_CP044031.1_1060427_1060721_-	NA	NA|407aa|up_5|NZ_CP044031.1_1060734_1061955_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|339aa|up_4|NZ_CP044031.1_1062035_1063052_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|819aa|up_3|NZ_CP044031.1_1063326_1065783_+	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|1508aa|up_2|NZ_CP044031.1_1065782_1070306_+	NA	NA|587aa|up_1|NZ_CP044031.1_1072667_1074428_-	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein	NA|111aa|up_0|NZ_CP044031.1_1074411_1074744_-	pfam01491, Frataxin_Cyay, Frataxin-like domain	NA|128aa|down_0|NZ_CP044031.1_1081925_1082309_+	cd03499, SQR_TypeC_SdhC, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins	NA|130aa|down_1|NZ_CP044031.1_1082339_1082729_+	cd03495, SQR_TypeC_SdhD_like, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit-like; composed of predominantly uncharacterized bacterial proteins with similarity to the E	NA|596aa|down_2|NZ_CP044031.1_1082923_1084711_+	PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|262aa|down_3|NZ_CP044031.1_1084745_1085531_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|522aa|down_4|NZ_CP044031.1_1086734_1088300_+	pfam11638, DnaA_N, DnaA N-terminal domain	NA|483aa|down_5|NZ_CP044031.1_1088308_1089757_+	PRK09165, PRK09165, replicative DNA helicase; Provisional	NA|376aa|down_6|NZ_CP044031.1_1089899_1091027_-	NA	NA|190aa|down_7|NZ_CP044031.1_1091480_1092050_-	NA	NA|152aa|down_8|NZ_CP044031.1_1092146_1092602_-	pfam06412, TraD, Conjugal transfer protein TraD	NA|53aa|down_9|NZ_CP044031.1_1092897_1093056_+	TIGR02768, conjugal_transfer_protein_TraA, Ti-type conjugative transfer relaxase TraA
GCF_008693345.1_ASM869334v1	NZ_CP044031	Orientia tsutsugamushi strain Wuj/2014 chromosome, complete genome	3	1645623-1645741	2	CRISPRCasFinder	no		DEDDh,RT	Orphan	AGCTGAAGGCAGAGCTGAAGGTA	23	2	13	1645646-1645670|1645646-1645670|1645646-1645670|1645646-1645670|1645646-1645670|1645646-1645670|1645694-1645718|1645694-1645718|1645694-1645718|1645694-1645718|1645694-1645718|1645694-1645718|1645694-1645718	NZ_CP044031.1_513949-513973|NZ_CP044031.1_633583-633559|NZ_CP044031.1_1823334-1823310|NZ_CP044031.1_1850401-1850377|NZ_CP044031.1_1850449-1850425|NZ_CP044031.1_1901801-1901777|NZ_CP044031.1_97286-97310|NZ_CP044031.1_322832-322856|NZ_CP044031.1_322844-322868|NZ_CP044031.1_322856-322880|NZ_CP044031.1_322868-322892|NZ_CP044031.1_1749790-1749814|NZ_CP044031.1_1316344-1316320	NA	2	2	Orphan	DEDDh,RT	NA|168aa|up_9|NZ_CP044031.1_1633283_1633787_+,NA|88aa|up_7|NZ_CP044031.1_1634967_1635231_+,NA|134aa|down_7|NZ_CP044031.1_1658652_1659054_-,NA|112aa|down_8|NZ_CP044031.1_1659602_1659938_-	NA|168aa|up_9|NZ_CP044031.1_1633283_1633787_+	NA	NA|270aa|up_8|NZ_CP044031.1_1633790_1634600_-	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|88aa|up_7|NZ_CP044031.1_1634967_1635231_+	NA	NA|233aa|up_6|NZ_CP044031.1_1635295_1635994_+	pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	NA|158aa|up_5|NZ_CP044031.1_1636221_1636695_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|165aa|up_4|NZ_CP044031.1_1637673_1638168_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|196aa|up_3|NZ_CP044031.1_1638219_1638807_+	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|313aa|up_2|NZ_CP044031.1_1638928_1639867_+	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase	NA|152aa|up_1|NZ_CP044031.1_1639934_1640390_-	pfam06412, TraD, Conjugal transfer protein TraD	NA|368aa|up_0|NZ_CP044031.1_1643682_1644786_+	TIGR02760, conjugative_transfer_relaxase_protein_TraI, conjugative transfer relaxase protein TraI	NA|585aa|down_0|NZ_CP044031.1_1645902_1647657_-	pfam10412, TrwB_AAD_bind, Type IV secretion-system coupling protein DNA-binding domain	NA|382aa|down_1|NZ_CP044031.1_1647660_1648806_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|880aa|down_2|NZ_CP044031.1_1648830_1651470_-	pfam07916, TraG_N, TraG-like protein, N-terminal region	NA|233aa|down_3|NZ_CP044031.1_1652768_1653467_-	pfam13728, TraF, F plasmid transfer operon protein	NA|564aa|down_4|NZ_CP044031.1_1653463_1655155_-	pfam06986, TraN, Type-1V conjugative transfer system mating pair stabilisation	NA|136aa|down_5|NZ_CP044031.1_1655151_1655559_-	pfam09673, TrbC_Ftype, Type-F conjugative transfer system pilin assembly protein	NA|154aa|down_6|NZ_CP044031.1_1658079_1658541_-	cd16430, TraB, TraB is a homolog of VirB10 which forms part of core complex in Type IV secretion system (T4SS)	NA|134aa|down_7|NZ_CP044031.1_1658652_1659054_-	NA	NA|112aa|down_8|NZ_CP044031.1_1659602_1659938_-	NA	NA|140aa|down_9|NZ_CP044031.1_1659990_1660410_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons
