The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP044121	Raoultella planticola strain S25 chromosome, complete genome	5474091	1700215	1749476	5474091	terminase,head,lysis,coat	Enterobacteria_phage(28.57%)	68	NA	NA
WP_150341191.1|1700215_1701157_-	hypothetical protein	NA	H9YPX8	environmental_Halophage	51.2	4.6e-13
WP_150341192.1|1703085_1705569_-	MoaD/ThiS family protein	NA	F1C5A7	Cronobacter_phage	45.8	1.1e-199
WP_150341193.1|1705555_1705951_-	NlpC/P60 family protein	NA	F1C5F2	Cronobacter_phage	57.1	1.6e-39
WP_150341194.1|1705947_1706418_-	hypothetical protein	NA	A0A1W6DXV1	Salmonella_phage	38.5	3.1e-26
WP_150341583.1|1706417_1706837_-	hypothetical protein	NA	F1C5F0	Cronobacter_phage	56.1	2.9e-36
WP_071887212.1|1707007_1707271_+	DUF1883 domain-containing protein	NA	NA	NA	NA	NA
WP_049264444.1|1707250_1707430_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_150341195.1|1707469_1710163_-	tape measure protein	NA	A0A1B1W284	Salmonella_phage	45.9	5.2e-118
WP_127673709.1|1710217_1710613_-	hypothetical protein	NA	I6R0Q4	Salmonella_phage	44.6	4.0e-27
WP_150341196.1|1710630_1711011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150341197.1|1711102_1711387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_104896059.1|1711431_1711962_-	KilA-N domain-containing protein	NA	A0A2H4FQV0	Salmonella_phage	89.1	5.1e-86
WP_150341198.1|1712177_1712891_-	hypothetical protein	NA	G0ZNE7	Cronobacter_phage	54.6	2.5e-64
WP_088911441.1|1712959_1713724_-	immunoglobulin domain-containing protein	NA	G0ZNE6	Cronobacter_phage	44.0	7.4e-38
WP_088911440.1|1713782_1714166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088911439.1|1714162_1714531_-	hypothetical protein	NA	F1C5E3	Cronobacter_phage	78.7	1.2e-46
WP_088911438.1|1714533_1714896_-	hypothetical protein	NA	G0ZNE2	Cronobacter_phage	50.8	6.2e-27
WP_088911437.1|1714906_1715224_-	hypothetical protein	NA	G8GWD9	Rhodobacter_phage	62.0	9.6e-32
WP_088911436.1|1715216_1715390_-	50S ribosomal protein L13	NA	Q5G8X7	Enterobacteria_phage	50.9	6.0e-12
WP_088911435.1|1715389_1715770_-	hypothetical protein	NA	F1C5E2	Cronobacter_phage	56.9	3.7e-30
WP_088911434.1|1715772_1716141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088911433.1|1716150_1717227_-|coat	phage coat protein	coat	F1C5E1	Cronobacter_phage	77.4	1.6e-158
WP_088911432.1|1717238_1717679_-	hypothetical protein	NA	F1C5E0	Cronobacter_phage	63.7	4.4e-43
WP_088911431.1|1717682_1719068_-	DUF2213 domain-containing protein	NA	F1C5D9	Cronobacter_phage	63.8	4.9e-165
WP_088911430.1|1719120_1719864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088911429.1|1719902_1720901_-|head	phage head morphogenesis protein	head	F1C5D8	Cronobacter_phage	67.6	1.0e-111
WP_088911428.1|1720827_1722297_-	DUF1073 domain-containing protein	NA	F1C5D7	Cronobacter_phage	56.3	8.1e-150
WP_048294304.1|1722309_1723608_-|terminase	PBSX family phage terminase large subunit	terminase	Q5G8Y7	Enterobacteria_phage	94.3	3.0e-241
WP_088911427.1|1723591_1724059_-	DUF2280 domain-containing protein	NA	I6S1P9	Salmonella_phage	74.5	4.7e-59
WP_064386384.1|1724090_1724738_-	hypothetical protein	NA	I6S676	Salmonella_phage	80.1	6.2e-102
WP_064386385.1|1725124_1725304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088911426.1|1725582_1725933_-	hypothetical protein	NA	A0A0K2FIW3	Enterobacter_phage	41.5	2.9e-13
WP_064367593.1|1725929_1726424_-	lysozyme	NA	M9P0E5	Enterobacteria_phage	89.6	2.9e-83
WP_064367594.1|1726401_1726626_-|lysis	lysis protein	lysis	M9NZI9	Enterobacteria_phage	87.8	6.3e-30
WP_088911425.1|1727363_1728173_-	antitermination protein	NA	M9NZB0	Enterobacteria_phage	77.0	9.4e-124
WP_088911423.1|1728309_1728669_-	RusA family crossover junction endodeoxyribonuclease	NA	K7P6W0	Enterobacteria_phage	62.9	4.9e-40
WP_104897256.1|1728665_1728962_-	DUF1364 domain-containing protein	NA	A0A0U2KD41	Escherichia_phage	77.7	3.2e-37
WP_104897248.1|1728964_1729171_-	hypothetical protein	NA	H6WRY8	Salmonella_phage	72.7	1.8e-23
WP_150341199.1|1729170_1729770_-	DUF1367 family protein	NA	K7PKS6	Enterobacteria_phage	83.4	9.8e-94
WP_088911448.1|1729817_1730054_-	hypothetical protein	NA	K7PHG9	Enterobacteria_phage	65.4	5.8e-26
WP_108452680.1|1730541_1730811_-	hypothetical protein	NA	H6WRY4	Salmonella_phage	77.9	1.5e-33
WP_150341584.1|1730857_1731640_-	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	83.0	8.7e-50
WP_142523956.1|1731864_1732380_-	hypothetical protein	NA	G9L6B3	Escherichia_phage	72.7	1.1e-69
WP_150341200.1|1732681_1732888_-	hypothetical protein	NA	A0A1U8QWK2	Salmonella_phage	63.6	5.3e-07
WP_150341585.1|1732884_1733553_-	hypothetical protein	NA	Q5QF30	Pseudomonas_virus	48.2	7.9e-52
WP_150341201.1|1733578_1733923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150341202.1|1734585_1734921_-	DUF977 family protein	NA	H6WRX9	Salmonella_phage	41.0	1.6e-13
WP_046852412.1|1734913_1735627_-	Replication protein P	NA	A0A0M3ULE2	Salmonella_phage	56.7	3.2e-67
WP_150341586.1|1735623_1736481_-	hypothetical protein	NA	K7PGZ0	Enterobacteria_phage	65.1	8.5e-91
WP_099144372.1|1736615_1736876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150341203.1|1736886_1737423_-	hypothetical protein	NA	K7PJT7	Enterobacteria_phage	72.1	6.5e-65
WP_041937615.1|1737425_1737644_-	Rha family transcriptional regulator	NA	K7PKS2	Enterobacteria_phage	60.6	2.2e-19
WP_150341204.1|1737657_1738125_+	helix-turn-helix domain-containing protein	NA	K7PHG0	Enterobacteria_phage	78.1	2.9e-61
WP_150341587.1|1738294_1738663_+	hypothetical protein	NA	K7PJT6	Enterobacteria_phage	73.6	2.7e-46
WP_150341205.1|1738652_1739075_+	helix-turn-helix domain-containing protein	NA	G8C7T9	Escherichia_phage	63.4	4.7e-42
WP_150341206.1|1739061_1739463_+	hypothetical protein	NA	G8C7T8	Escherichia_phage	51.1	1.8e-30
WP_150341207.1|1739499_1739709_-	fumarate hydratase FumD	NA	I6R0R9	Salmonella_phage	88.4	6.1e-27
WP_088912143.1|1740195_1740387_+	DUF1482 family protein	NA	NA	NA	NA	NA
WP_099843682.1|1740395_1740554_+	hypothetical protein	NA	K7P7H7	Enterobacteria_phage	57.7	3.2e-12
WP_150341208.1|1740691_1743628_+	exodeoxyribonuclease	NA	H6WRX1	Salmonella_phage	59.1	1.2e-296
WP_088912140.1|1743641_1744730_+	recombinase RecT	NA	H6WRX0	Salmonella_phage	56.8	1.3e-107
WP_088912139.1|1744764_1745319_+	hypothetical protein	NA	A0A141GF13	Brucella_phage	46.1	2.1e-34
WP_088912138.1|1745315_1745624_+	hypothetical protein	NA	I6PD68	Cronobacter_phage	55.9	4.2e-24
WP_088912137.1|1745631_1745874_+	DUF4060 family protein	NA	M9P0E0	Enterobacteria_phage	71.4	2.1e-23
WP_088912136.1|1745926_1746208_+	excisionase family protein	NA	A0A286S2A4	Klebsiella_phage	56.3	5.9e-17
WP_071359486.1|1746244_1747525_+	DUF3596 domain-containing protein	NA	Q8W658	Enterobacteria_phage	61.0	1.1e-153
WP_150341209.1|1747705_1748719_-	Zn-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_004862432.1|1749149_1749476_-	YnfA family protein	NA	A0A218MNG8	uncultured_virus	53.5	7.8e-21
>prophage 2
NZ_CP044121	Raoultella planticola strain S25 chromosome, complete genome	5474091	1930134	1941285	5474091		uncultured_Caudovirales_phage(50.0%)	10	NA	NA
WP_150341232.1|1930134_1932282_+	formate dehydrogenase subunit alpha	NA	A0A077SK27	Escherichia_phage	23.6	8.0e-29
WP_032687266.1|1932432_1932891_-	(2Fe-2S)-binding protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.7	9.7e-17
WP_150341233.1|1932936_1936152_-	molybdopterin-dependent oxidoreductase	NA	A0A0P0IVM8	Acinetobacter_phage	25.6	1.7e-11
WP_150341234.1|1936501_1937272_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	29.1	2.3e-15
WP_032687263.1|1937363_1937747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032687262.1|1937782_1938424_+	CatA-like O-acetyltransferase	NA	NA	NA	NA	NA
WP_032687261.1|1938403_1938829_-	glutaredoxin-dependent arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	62.9	3.6e-42
WP_032699610.1|1938838_1940131_-	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	69.8	2.8e-162
WP_032697310.1|1940176_1940497_-	metalloregulator ArsR/SmtB family transcription factor	NA	A0A2H4J145	uncultured_Caudovirales_phage	47.4	2.9e-20
WP_032687258.1|1940586_1941285_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	65.1	2.4e-83
>prophage 3
NZ_CP044121	Raoultella planticola strain S25 chromosome, complete genome	5474091	2515885	2523754	5474091		Enterobacteria_phage(57.14%)	7	NA	NA
WP_015583926.1|2515885_2516890_+	NAD-dependent epimerase	NA	E3T4Y8	Cafeteria_roenbergensis_virus	29.1	2.6e-30
WP_044350299.1|2517274_2518441_-	UDP-glucose 6-dehydrogenase	NA	O41091	Paramecium_bursaria_Chlorella_virus	54.5	8.2e-113
WP_150341294.1|2518642_2519197_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	60.5	6.1e-50
WP_150341295.1|2519208_2520099_-	dTDP-4-dehydrorhamnose reductase	NA	I7HXC9	Enterobacteria_phage	34.9	3.9e-30
WP_150341296.1|2520131_2521001_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	68.8	6.1e-113
WP_150341297.1|2521039_2522104_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.1	3.7e-104
WP_150341298.1|2522347_2523754_-	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.7	6.6e-40
>prophage 1
NZ_CP044120	Raoultella planticola strain S25 plasmid pS25-68, complete sequence	68566	0	66690	68566	integrase,transposase	Escherichia_phage(25.93%)	73	21200:21217	38050:38067
WP_009483812.1|77_329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000776034.1|486_918_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	53.3	1.6e-29
WP_004118291.1|917_2189_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	63.3	4.9e-151
WP_012600007.1|2270_3248_-	ParB/RepB/Spo0J family partition protein	NA	Q38420	Escherichia_phage	54.4	2.6e-88
WP_000368714.1|3244_4450_-	ParA family protein	NA	A0A077SL49	Escherichia_phage	69.6	2.4e-163
WP_000339857.1|4864_5134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100115263.1|5166_5364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004118283.1|5490_6357_-	replication initiation protein	NA	A0A222YYK1	Escherichia_phage	31.1	1.5e-23
WP_000764642.1|7124_7382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000015958.1|7439_8216_-|integrase	phage integrase family protein	integrase	I3WFA4	Macacine_betaherpesvirus	92.9	6.4e-53
WP_000129823.1|8212_8956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000493378.1|9006_9357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032413492.1|9981_11790_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_032621004.1|11786_12833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094686392.1|14149_15331_+	DUF4268 domain-containing protein	NA	NA	NA	NA	NA
WP_094686391.1|16802_16997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000807690.1|16997_17753_-	replication initiation protein RepE	NA	I3WF20	Macacine_betaherpesvirus	96.0	4.5e-136
WP_000861580.1|18750_18942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001039463.1|18950_19337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071549086.1|19893_20154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020324562.1|20099_20804_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	99.6	9.9e-138
WP_071549088.1|20828_21341_+	restriction endonuclease	NA	NA	NA	NA	NA
21200:21217	attL	CCTGATAGATTTGCTCAC	NA	NA	NA	NA
WP_001749967.1|21345_21552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001288432.1|21933_23367_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	50.6	7.0e-106
WP_004098817.1|23400_24615_-	type II site-specific deoxyribonuclease	NA	E5E3X4	Burkholderia_phage	42.5	1.2e-34
WP_024139167.1|24621_24834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001389365.1|24875_25640_-|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
WP_001297012.1|25727_25841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000376623.1|26146_26647_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001993321.1|26665_26845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000259031.1|26774_27614_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
WP_000679427.1|27607_27955_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
WP_001749994.1|28185_28830_+	quinolone resistance pentapeptide repeat protein QnrB6	NA	NA	NA	NA	NA
WP_001749993.1|28921_29830_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	52.3	2.5e-77
WP_000050481.1|30294_31836_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000259031.1|32240_33080_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
WP_000679427.1|33073_33421_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
WP_001749984.1|33537_34383_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA16	NA	NA	NA	NA	NA
WP_001749985.1|34563_35037_-	trimethoprim-resistant dihydrofolate reductase DfrA27	NA	G3MBI7	Bacillus_virus	29.1	1.4e-15
WP_001749986.1|35169_35622_-	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA	NA
WP_063840321.1|35718_36273_-	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA	NA
WP_000845048.1|36564_37578_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_015344971.1|37546_37831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001749988.1|37970_38540_+	recombinase family protein	NA	E5FFF9	Burkholderia_phage	43.2	5.2e-36
38050:38067	attR	GTGAGCAAATCTATCAGG	NA	NA	NA	NA
WP_004201235.1|39296_40766_+	HNH endonuclease	NA	G0X580	Salmonella_phage	51.3	5.5e-21
WP_004201234.1|41285_42023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004201232.1|42160_42847_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_150340981.1|43339_44110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000842134.1|45940_47050_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	30.2	2.8e-33
WP_108996614.1|47144_48329_-	tetracycline efflux MFS transporter Tet(D)	NA	NA	NA	NA	NA
WP_000113282.1|48424_49081_+	tetracycline resistance transcriptional repressor TetR(D)	NA	NA	NA	NA	NA
WP_001067855.1|49092_49797_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001550559.1|49830_50322_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001446887.1|50428_51166_+	recombinase family protein	NA	NA	NA	NA	NA
WP_000743213.1|51162_51387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000214122.1|51660_52875_-	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	1.2e-18
WP_001447541.1|53091_53976_-	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
WP_001067784.1|54900_55605_+|transposase	IS6-like element IS1006 family transposase	transposase	A0A077SL39	Escherichia_phage	85.8	1.9e-120
WP_046788546.1|55689_56091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015344976.1|56099_59051_-|transposase	Tn3-like element TnAs3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.5	0.0e+00
WP_000147567.1|59053_59614_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	86.2	4.0e-49
WP_000993245.1|59739_59952_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_001446012.1|59914_60034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001087807.1|60017_60254_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
WP_001277466.1|60250_60616_-	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
WP_000209296.1|60633_62319_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.8e-39
WP_000522996.1|62357_62783_-	organomercurial transporter MerC	NA	NA	NA	NA	NA
WP_000732275.1|62810_63086_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_004200999.1|63101_63467_-	mercuric ion transporter MerT	NA	NA	NA	NA	NA
WP_001166628.1|63538_63994_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_001776119.1|64253_64781_+	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	39.5	5.7e-21
WP_001776120.1|64813_65245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001776122.1|65724_66690_-	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	42.7	1.6e-58
