The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP044203	Salmonella enterica subsp. enterica serovar Senftenberg strain AR-0405 chromosome, complete genome	4803391	1530596	1536893	4803391		Enterobacteria_phage(50.0%)	6	NA	NA
WP_001100812.1|1530596_1531127_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	56.5	1.4e-51
WP_023165990.1|1531131_1532010_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	3.0e-107
WP_001023659.1|1532057_1532957_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
WP_000697846.1|1532956_1534042_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_000981469.1|1534418_1535312_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111842.1|1535489_1536893_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	2.3e-21
>prophage 2
NZ_CP044203	Salmonella enterica subsp. enterica serovar Senftenberg strain AR-0405 chromosome, complete genome	4803391	1617843	1627014	4803391	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195334.1|1617843_1619877_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703137.1|1620117_1620576_+	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197951.1|1620747_1621278_+	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
WP_000950413.1|1621334_1621802_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|1621848_1622568_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272850.1|1622564_1624250_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_001240418.1|1624472_1625204_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|1625263_1625371_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|1625351_1626083_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|1626066_1627014_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
>prophage 3
NZ_CP044203	Salmonella enterica subsp. enterica serovar Senftenberg strain AR-0405 chromosome, complete genome	4803391	1843176	1911786	4803391	head,portal,terminase,capsid,lysis,tRNA,integrase,tail,protease	Salmonella_phage(54.69%)	94	1839266:1839281	1922652:1922667
1839266:1839281	attL	GGCCTGATAAGCGCAG	NA	NA	NA	NA
WP_000016631.1|1843176_1843989_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_001289141.1|1843988_1845002_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000699173.1|1845069_1846206_-	4-phosphoerythronate dehydrogenase PdxB	NA	A0A2R8FDS8	Brazilian_cedratvirus	29.1	5.0e-22
WP_000553395.1|1846309_1847311_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA	NA
WP_000127728.1|1847307_1848486_-	MFS transporter	NA	NA	NA	NA	NA
WP_001051266.1|1848665_1849040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000433433.1|1849212_1849395_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_000847543.1|1849606_1850125_+	YbjP/YqhG family protein	NA	NA	NA	NA	NA
WP_001142914.1|1850191_1850848_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000817159.1|1850945_1852160_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA	NA
WP_076606705.1|1852259_1854320_+|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
WP_000559749.1|1854371_1854647_-	YfcL family protein	NA	NA	NA	NA	NA
WP_001089211.1|1854679_1855228_-	elongation factor P hydroxylase	NA	NA	NA	NA	NA
WP_000368599.1|1855227_1856037_-	TSUP family transporter	NA	NA	NA	NA	NA
WP_000750429.1|1856036_1856861_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA	NA
WP_000918457.1|1856864_1857950_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	47.8	9.1e-90
WP_001542329.1|1857985_1858918_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_000730794.1|1859083_1859635_+	endonuclease SmrB	NA	NA	NA	NA	NA
WP_001195800.1|1859734_1860220_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA	NA
WP_000214135.1|1860428_1862576_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA	NA
WP_001248126.1|1862575_1863886_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA	NA
WP_000030904.1|1864063_1864348_-	DUF406 family protein	NA	NA	NA	NA	NA
WP_000245433.1|1864712_1866026_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA	NA
WP_000776787.1|1866086_1866842_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA	NA
WP_000377772.1|1867130_1868072_+	membrane protein	NA	E7DYY8	Enterobacteria_phage	88.2	1.4e-147
WP_000958645.1|1868386_1869556_+|integrase	tyrosine-type recombinase/integrase	integrase	C6ZR22	Salmonella_phage	90.0	2.3e-211
WP_000973018.1|1869583_1869697_+	DinI-like family protein	NA	S4TND2	Salmonella_phage	83.8	2.1e-10
WP_107238630.1|1869903_1871034_-|tail	tail fiber domain-containing protein	tail	S4TSP4	Salmonella_phage	99.2	1.1e-202
WP_023234682.1|1871044_1872004_-	hypothetical protein	NA	H6WRW5	Salmonella_phage	99.7	2.8e-183
WP_107238629.1|1872012_1874724_-	DUF1983 domain-containing protein	NA	S4TTF5	Salmonella_phage	94.4	0.0e+00
WP_107238628.1|1874723_1875122_-	hypothetical protein	NA	S4TR39	Salmonella_phage	93.2	2.9e-70
WP_048217931.1|1875128_1875713_-	hypothetical protein	NA	S4TND4	Salmonella_phage	96.9	1.6e-104
WP_069325441.1|1875712_1876306_-	hypothetical protein	NA	S4TSP7	Salmonella_phage	95.9	3.1e-108
WP_003841703.1|1876471_1876696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069325440.1|1876684_1877044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045159944.1|1877089_1880404_-|tail	phage tail tape measure protein	tail	S4TTF9	Salmonella_phage	96.0	0.0e+00
WP_000404385.1|1880450_1880786_-	zinc ribbon domain-containing protein	NA	S4TR42	Salmonella_phage	100.0	7.0e-57
WP_024134502.1|1880842_1881121_-	DUF4035 domain-containing protein	NA	S4TND7	Salmonella_phage	100.0	1.9e-44
WP_001129939.1|1881144_1881516_-|tail	phage tail protein	tail	S4TSQ0	Salmonella_phage	94.2	3.0e-61
WP_000097142.1|1881543_1882248_-	immunoglobulin domain-containing protein	NA	K7PHL2	Enterobacterial_phage	74.4	4.4e-93
WP_023242808.1|1882304_1882652_-	DUF3168 domain-containing protein	NA	S4TTG3	Salmonella_phage	97.4	3.2e-57
WP_010835820.1|1882648_1883098_-	HK97 gp10 family phage protein	NA	S4TR46	Salmonella_phage	96.6	2.5e-73
WP_020898872.1|1883094_1883433_-|head	phage head closure protein	head	A0A2H4JHK5	uncultured_Caudovirales_phage	70.5	6.6e-39
WP_001648719.1|1883442_1883769_-|head,tail	phage gp6-like head-tail connector protein	head,tail	K7PKT4	Enterobacteria_phage	85.2	5.2e-49
WP_064035140.1|1883768_1883966_-	hypothetical protein	NA	K7PHI6	Enterobacteria_phage	66.0	2.2e-10
WP_107238627.1|1884009_1885227_-|capsid	phage major capsid protein	capsid	K7PM57	Enterobacteria_phage	88.6	1.0e-198
WP_107238626.1|1885236_1886085_-|protease	Clp protease ClpP	protease	K7PH05	Enterobacteria_phage	87.9	1.3e-131
WP_107238625.1|1886098_1887406_-|portal	phage portal protein	portal	K7PJU5	Enterobacteria_phage	85.7	3.8e-215
WP_045159942.1|1887405_1889148_-|terminase	terminase large subunit	terminase	A0A0U2C138	Paracoccus_phage	46.2	1.6e-141
WP_010835825.1|1889101_1889566_-|terminase	phage terminase small subunit P27 family	terminase	Q9B019	Phage_GMSE-1	62.1	1.3e-48
WP_020898878.1|1889698_1890043_-	HNH endonuclease	NA	K7P7P6	Enterobacteria_phage	75.7	1.0e-47
WP_107238624.1|1890161_1890629_-|lysis	lysis protein	lysis	I6RSQ8	Salmonella_phage	96.8	2.5e-73
WP_058803900.1|1890717_1891215_-	lysozyme	NA	A0A1V0E5Q7	Salmonella_phage	93.3	1.9e-87
WP_000781414.1|1891214_1891487_-	hypothetical protein	NA	A0A1V0E5R8	Salmonella_phage	100.0	1.1e-41
WP_107238623.1|1891878_1892643_-	antitermination protein	NA	A0A0M4RTW7	Salmonella_phage	97.6	8.0e-141
WP_000219138.1|1892639_1892819_-	hypothetical protein	NA	A0A1V0E5I7	Salmonella_phage	100.0	7.1e-24
WP_000149882.1|1892799_1893003_-	protein ninH	NA	I6RSQ6	Salmonella_phage	100.0	7.2e-33
WP_058803896.1|1892999_1893224_-	hypothetical protein	NA	Q76H69	Enterobacteria_phage	98.6	4.1e-37
WP_058803895.1|1893220_1893826_-	recombination protein NinG	NA	G9L693	Escherichia_phage	97.0	8.1e-96
WP_058803893.1|1893818_1893995_-	protein ninF	NA	Q76H71	Enterobacteria_phage	96.6	1.5e-26
WP_001532927.1|1893987_1894329_-	DUF2591 domain-containing protein	NA	Q76H72	Enterobacteria_phage	100.0	2.1e-64
WP_072213542.1|1894331_1894508_-	NinE family protein	NA	A0A220NRK6	Escherichia_phage	96.6	1.9e-26
WP_058803891.1|1894504_1894951_-	recombination protein NinB	NA	I6R0N7	Salmonella_phage	98.6	7.8e-80
WP_058803889.1|1894907_1895204_-	hypothetical protein	NA	E7C9R7	Salmonella_phage	98.0	2.0e-47
WP_023972016.1|1895468_1895732_-	hypothetical protein	NA	I6R992	Salmonella_phage	67.8	2.5e-25
WP_031232654.1|1895743_1895938_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023170974.1|1895952_1896159_-	hypothetical protein	NA	A0A192Y802	Salmonella_phage	97.1	1.2e-30
WP_001248404.1|1896231_1897608_-	AAA family ATPase	NA	A0A192Y673	Salmonella_phage	99.8	4.3e-254
WP_107238662.1|1897604_1898492_-	replication protein	NA	G9L680	Escherichia_phage	98.0	9.9e-143
WP_058803887.1|1898554_1898827_-	hypothetical protein	NA	G9L679	Escherichia_phage	96.7	3.9e-42
WP_058803885.1|1898849_1899140_-	hypothetical protein	NA	I6RSP4	Salmonella_phage	97.9	4.5e-44
WP_058803883.1|1899248_1899476_-	helix-turn-helix domain-containing protein	NA	A0A2H4FNF3	Salmonella_phage	80.0	8.7e-27
WP_058803881.1|1899585_1900272_+	helix-turn-helix transcriptional regulator	NA	G8C7U1	Escherichia_phage	76.7	1.9e-93
WP_044128249.1|1900322_1901345_+	hypothetical protein	NA	A4KWR9	Enterobacteria_phage	40.9	6.2e-72
WP_058803878.1|1901488_1901692_-	hypothetical protein	NA	A0A192Y6Q5	Salmonella_phage	98.5	2.0e-27
WP_125866875.1|1902069_1902252_+	hypothetical protein	NA	A0A220NQW5	Salmonella_phage	96.7	6.3e-28
WP_058803876.1|1902272_1902575_+	hypothetical protein	NA	B8K1E6	Salmonella_phage	93.0	3.5e-47
WP_107238622.1|1902577_1903174_+	hypothetical protein	NA	V5URU3	Shigella_phage	50.0	6.2e-48
WP_107238621.1|1903250_1904369_+	hypothetical protein	NA	Q5G8T6	Enterobacteria_phage	71.2	9.5e-66
WP_000401881.1|1904519_1904774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023242791.1|1904859_1904994_+	hypothetical protein	NA	K7PHK2	Enterobacteria_phage	78.0	2.1e-09
WP_042948414.1|1904978_1905173_+	hypothetical protein	NA	M9NZE2	Enterobacteria_phage	38.3	4.7e-05
WP_000613174.1|1905260_1905449_+	hypothetical protein	NA	C6ZR38	Salmonella_phage	82.3	1.7e-23
WP_052938546.1|1905456_1906164_+	recombinase	NA	E7C9Q0	Salmonella_phage	96.2	7.9e-135
WP_000168278.1|1906164_1906623_+	single-stranded DNA-binding protein	NA	C6ZR36	Salmonella_phage	89.0	2.6e-70
WP_000845181.1|1906631_1907111_+	hypothetical protein	NA	Q716E9	Shigella_phage	91.2	9.3e-87
WP_001275767.1|1907124_1907409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000133293.1|1907572_1908124_+	phage N-6-adenine-methyltransferase	NA	E5AGF8	Erwinia_phage	59.4	8.8e-57
WP_000200029.1|1908414_1908636_+	TraR/DksA family transcriptional regulator	NA	A0A0N7C211	Escherichia_phage	54.3	1.6e-14
WP_000742026.1|1908635_1909709_+	DNA cytosine methyltransferase	NA	Q858D4	Salmonella_phage	67.6	2.0e-142
WP_000487123.1|1909671_1909914_+	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
WP_151103026.1|1909923_1910247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024135442.1|1910382_1910586_+	histidine kinase	NA	I6RSG8	Salmonella_phage	56.7	7.3e-17
WP_000716011.1|1910847_1911786_-|protease	omptin family outer membrane protease PgtE	protease	NA	NA	NA	NA
1922652:1922667	attR	CTGCGCTTATCAGGCC	NA	NA	NA	NA
>prophage 4
NZ_CP044203	Salmonella enterica subsp. enterica serovar Senftenberg strain AR-0405 chromosome, complete genome	4803391	2680738	2695764	4803391	head,portal,transposase,capsid,tRNA,terminase,tail,protease	uncultured_Caudovirales_phage(66.67%)	15	NA	NA
WP_001264391.1|2680738_2681752_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.5	2.8e-109
WP_001144069.1|2681979_2682195_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_000918865.1|2682430_2684176_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	2.1e-72
WP_001519776.1|2684325_2686173_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
WP_000237776.1|2686296_2686803_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
WP_095055964.1|2687755_2688867_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	25.0	4.9e-06
WP_053521170.1|2688909_2689482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000219413.1|2689569_2691231_-|terminase	terminase large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	94.2	1.5e-311
WP_001137908.1|2691214_2691571_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	93.2	3.3e-57
WP_023165946.1|2691711_2692155_-	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	63.9	1.2e-51
WP_000818875.1|2692155_2692446_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JD08	uncultured_Caudovirales_phage	57.7	1.8e-29
WP_001201223.1|2692438_2692777_-|head	phage head closure protein	head	A0A2H4JHK5	uncultured_Caudovirales_phage	46.8	6.6e-23
WP_000269850.1|2692773_2694003_-|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	86.2	2.8e-212
WP_000381911.1|2694004_2694565_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	84.7	2.2e-87
WP_000734563.1|2694609_2695764_-|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	67.5	7.8e-148
>prophage 5
NZ_CP044203	Salmonella enterica subsp. enterica serovar Senftenberg strain AR-0405 chromosome, complete genome	4803391	3740000	3760228	4803391	tail,plate	Burkholderia_phage(38.1%)	24	NA	NA
WP_000587743.1|3740000_3740729_-	hypothetical protein	NA	A0A292GAQ8	Xanthomonas_phage	28.2	3.5e-13
WP_000493810.1|3741917_3742619_-	DUF4376 domain-containing protein	NA	K7PMH7	Enterobacteria_phage	45.9	7.6e-29
WP_000368191.1|3742621_3744067_-	short-chain fatty acid transporter	NA	A0A0M3ULH6	Salmonella_phage	38.1	5.0e-75
WP_000359504.1|3744069_3744702_-|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
WP_000951738.1|3744694_3745810_-|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	51.7	1.5e-100
WP_001093494.1|3745800_3746160_-|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	63.3	3.1e-34
WP_023165900.1|3746323_3747871_-	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	2.5e-48
WP_000703634.1|3747870_3748800_-	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	83.8	6.7e-150
WP_000593184.1|3748796_3749159_-	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
WP_000679389.1|3749486_3750209_-|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
WP_000818143.1|3750218_3751262_-	phage late control D family protein	NA	A4JWL3	Burkholderia_virus	45.9	2.9e-77
WP_001269716.1|3751249_3751459_-	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000271430.1|3751458_3752412_-	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	51.5	7.9e-37
WP_001262487.1|3752411_3754778_-|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.9	2.7e-70
WP_001185654.1|3754874_3755003_-|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001003638.1|3754962_3755280_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_000907495.1|3755331_3755856_-|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_000729848.1|3755855_3757283_-|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	71.2	1.4e-194
WP_000875314.1|3757272_3757470_-	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000449435.1|3757466_3757922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777266.1|3758081_3758396_-	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_001270444.1|3758408_3759014_-	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	61.0	1.0e-61
WP_001226439.1|3759016_3759304_-	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
WP_000615248.1|3759880_3760228_+	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
