The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	2647211	18520	62033	2647211	holin,head,terminase,tail,capsid	Staphylococcus_phage(68.75%)	52	NA	NA
WP_002478853.1|18520_19903_-	recombinase family protein	NA	A0A2H4JD28	uncultured_Caudovirales_phage	64.0	6.9e-167
WP_002478854.1|19959_20883_-	DUF5067 domain-containing protein	NA	H9A0K2	Staphylococcus_phage	76.1	1.7e-92
WP_002478855.1|20938_21550_-	helix-turn-helix domain-containing protein	NA	A0A2H4JCV3	uncultured_Caudovirales_phage	95.6	1.1e-105
WP_002474229.1|21721_21949_+	hypothetical protein	NA	A0A1Q1PVU3	Staphylococcus_phage	97.3	8.1e-33
WP_002478856.1|21976_22930_+	hypothetical protein	NA	H9A0Q6	Staphylococcus_phage	49.2	2.5e-43
WP_002478857.1|22926_23694_+	hypothetical protein	NA	U3PJ35	Staphylococcus_phage	68.8	1.0e-95
WP_002478858.1|23762_24074_+	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	61.1	9.4e-40
WP_002478859.1|24021_24405_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	30.8	7.3e-10
WP_002478860.1|24462_25215_+	hypothetical protein	NA	S4SW96	Staphylococcus_phage	98.4	3.1e-137
WP_002478861.1|25230_25374_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	95.7	9.6e-16
WP_150861605.1|25383_25986_-	hypothetical protein	NA	B7T096	Staphylococcus_virus	93.4	1.5e-97
WP_002478864.1|26213_26393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478865.1|26461_26947_+	siphovirus Gp157 family protein	NA	H9A0R4	Staphylococcus_phage	76.4	1.8e-61
WP_002478866.1|26947_27622_+	single-stranded DNA-binding protein	NA	I6T7Q2	Staphylococcus_virus	91.0	7.1e-109
WP_150861606.1|27618_28056_+	single-stranded DNA-binding protein	NA	G4KNN8	Staphylococcus_phage	70.1	8.3e-50
WP_002478868.1|28133_28940_+	DnaD domain protein	NA	I6SB74	Staphylococcus_virus	91.4	1.1e-100
WP_085317574.1|28939_29299_+	hypothetical protein	NA	A0A141VTR9	Staphylococcus_phage	82.4	1.4e-50
WP_085317572.1|29291_30527_+	AAA family ATPase	NA	A0A2H4J996	uncultured_Caudovirales_phage	86.9	2.2e-201
WP_002478871.1|30523_30751_+	hypothetical protein	NA	H9A0Z4	Staphylococcus_phage	41.5	1.2e-07
WP_002478872.1|30740_30980_+	DUF3269 family protein	NA	NA	NA	NA	NA
WP_002478873.1|30989_31397_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0N9SH85	Staphylococcus_phage	73.3	3.9e-54
WP_014533256.1|31393_31708_+	hypothetical protein	NA	A0A2H4JG42	uncultured_Caudovirales_phage	83.0	4.3e-16
WP_150861607.1|31710_31962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_150861608.1|31968_32391_+	DUF3310 domain-containing protein	NA	A0A2H4JE87	uncultured_Caudovirales_phage	68.2	2.3e-28
WP_150861609.1|33113_33266_+	DUF1381 domain-containing protein	NA	NA	NA	NA	NA
WP_070481527.1|33565_33982_+	transcriptional regulator	NA	A0A1W6JP87	Staphylococcus_phage	81.9	3.6e-63
WP_012990985.1|34283_34712_+	hypothetical protein	NA	A0A1P8BLJ8	Lactococcus_phage	47.2	8.4e-23
WP_150861654.1|34698_35979_+|terminase	PBSX family phage terminase large subunit	terminase	Q8SDU9	Staphylococcus_phage	88.0	1.5e-224
WP_150861610.1|37242_37872_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	43.6	8.8e-37
WP_014533264.1|38509_39460_+|head	phage head morphogenesis protein	head	A0A1W6JNS6	Staphylococcus_phage	79.7	1.7e-145
WP_002478890.1|39991_40597_+	DUF4355 domain-containing protein	NA	A0A1W6JNT6	Staphylococcus_phage	51.7	9.2e-15
WP_002478891.1|40614_41535_+|capsid	phage major capsid protein	capsid	A0A1W6JNT3	Staphylococcus_phage	89.5	5.8e-154
WP_002478892.1|41556_41826_+	hypothetical protein	NA	A0A1W6JNX0	Staphylococcus_phage	80.9	2.3e-34
WP_002478893.1|41827_42157_+|head,tail	phage head-tail connector protein	head,tail	A0A1W6JNR3	Staphylococcus_phage	80.7	6.6e-44
WP_150861611.1|42153_42456_+	hypothetical protein	NA	A0A1W6JNQ9	Staphylococcus_phage	83.0	1.4e-43
WP_002478895.1|42457_42817_+	hypothetical protein	NA	A0A1W6JNQ6	Staphylococcus_phage	81.0	2.6e-49
WP_002478896.1|42816_43206_+	hypothetical protein	NA	A0A1W6JNQ3	Staphylococcus_phage	80.6	7.1e-53
WP_002478897.1|43253_43808_+|tail	phage major tail protein, TP901-1 family	tail	A0A1W6JNU0	Staphylococcus_phage	94.0	1.5e-88
WP_002478898.1|43868_44228_+	hypothetical protein	NA	A0A1W6JNQ1	Staphylococcus_phage	91.6	8.3e-56
WP_002478899.1|44272_44617_+	hypothetical protein	NA	A0A1W6JNR9	Staphylococcus_phage	95.6	3.9e-55
WP_150861612.1|44631_48165_+|tail	phage tail protein	tail	A0A1W6JNU6	Staphylococcus_phage	67.9	1.4e-107
WP_002478901.1|48176_49136_+|tail	phage tail family protein	tail	A0A1W6JNU3	Staphylococcus_phage	90.3	2.3e-169
WP_002478902.1|49146_50382_+	hypothetical protein	NA	A0A1W6JNY1	Staphylococcus_phage	88.5	2.6e-213
WP_002478903.1|50382_52257_+	DUF2817 domain-containing protein	NA	A0A1W6JNS8	Staphylococcus_phage	89.6	0.0e+00
WP_150861613.1|52270_53428_+	DUF2479 domain-containing protein	NA	A0A1W6JNR8	Staphylococcus_phage	74.9	4.4e-167
WP_002478905.1|53443_53866_+	hypothetical protein	NA	A0A1W6JNR2	Staphylococcus_phage	66.9	4.7e-50
WP_002478906.1|53846_54245_+	hypothetical protein	NA	A0A2H4JAU6	uncultured_Caudovirales_phage	51.5	6.0e-31
WP_002478908.1|54720_56430_+	CHAP domain-containing protein	NA	A0A1W6JNR1	Staphylococcus_phage	81.9	9.2e-262
WP_150861614.1|56483_59255_+	DUF2479 domain-containing protein	NA	Q4ZC48	Staphylococcus_virus	52.1	3.6e-215
WP_002478910.1|59311_59584_+|holin	phage holin	holin	A0A2H4JHI3	uncultured_Caudovirales_phage	85.6	2.0e-38
WP_150861615.1|59583_60993_+	CHAP domain-containing protein	NA	A0A2H4J4H5	uncultured_Caudovirales_phage	84.0	1.3e-237
WP_002478912.1|61472_62033_+	hypothetical protein	NA	U3PBN3	Staphylococcus_phage	84.9	3.3e-91
>prophage 2
NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	2647211	335689	365942	2647211	tRNA	Staphylococcus_phage(96.15%)	32	NA	NA
WP_002458784.1|335689_337084_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	62.3	1.5e-169
WP_002477998.1|337090_338095_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	51.7	2.3e-95
WP_002458786.1|338091_338349_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	70.4	1.2e-29
WP_002458787.1|338415_338889_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	60.6	2.6e-49
WP_002477999.1|338869_339643_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	69.4	6.5e-98
WP_002458789.1|339706_341299_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	86.0	1.1e-274
WP_002458790.1|341670_342867_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	87.4	1.7e-198
WP_002458791.1|342965_343874_+	hypothetical protein	NA	A0A2H4PQQ8	Staphylococcus_phage	76.6	1.3e-102
WP_002478000.1|343988_344822_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	73.3	1.4e-119
WP_002478001.1|345006_345360_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_002478002.1|345356_345722_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	62.0	2.0e-33
WP_002478003.1|345790_346096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002478004.1|346352_347066_+	transaldolase	NA	M1PR54	Cyanophage	36.3	1.1e-19
WP_002458797.1|347196_347649_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	43.6	1.6e-16
WP_002458798.1|347629_348076_-	competence protein ComK	NA	NA	NA	NA	NA
WP_002478005.1|348091_348562_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	45.5	1.6e-27
WP_002458800.1|348759_348984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002458801.1|349185_350040_+	autolysin	NA	A0A1W6JNR1	Staphylococcus_phage	42.1	7.5e-39
WP_002478006.1|350423_351923_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	77.2	9.9e-18
WP_002478007.1|352234_353341_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	62.9	4.4e-124
WP_002458804.1|353348_353981_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	70.5	2.3e-77
WP_002478008.1|353993_355175_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	75.3	2.9e-174
WP_002458806.1|355187_355646_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	80.9	8.6e-58
WP_002478009.1|355723_356710_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	72.6	2.7e-133
WP_002458808.1|356926_357760_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_002458809.1|358252_358654_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002458810.1|358704_359268_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	67.4	3.5e-69
WP_002458811.1|359264_360218_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	86.1	3.2e-70
WP_002478010.1|360321_361497_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	78.8	1.8e-176
WP_002478011.1|361818_364233_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	87.1	0.0e+00
WP_002458814.1|364251_364563_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	68.0	6.5e-33
WP_002478012.1|364682_365942_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	83.5	3.7e-42
>prophage 3
NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	2647211	482725	491744	2647211	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_002478078.1|482725_483730_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	3.8e-05
WP_002478079.1|483732_484758_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002478080.1|484776_485916_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.0	4.2e-85
WP_002458927.1|485934_486195_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.3	2.8e-05
WP_002478081.1|486380_488669_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	34.4	2.8e-32
WP_002478082.1|488929_491206_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.0	8.7e-66
WP_002458930.1|491225_491744_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	1.4e-27
>prophage 4
NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	2647211	617441	626138	2647211		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_002459061.1|617441_618173_+	segregation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	24.0	1.1e-06
WP_012990840.1|618165_618699_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	29.1	3.5e-10
WP_002478163.1|618701_619439_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_002459064.1|619588_620314_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.5	3.4e-48
WP_002478164.1|620297_622046_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	31.6	1.5e-20
WP_002478165.1|622769_623312_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_002449743.1|623453_623702_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	49.3	5.8e-16
WP_002459068.1|623812_624772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002459069.1|624758_626138_+	ATP-dependent DNA helicase RecQ	NA	J2YAJ8	Acanthamoeba_polyphaga_lentillevirus	33.2	1.6e-51
>prophage 5
NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	2647211	1030574	1039044	2647211		Synechococcus_phage(33.33%)	9	NA	NA
WP_002478377.1|1030574_1031141_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.2	3.4e-27
WP_002478378.1|1031140_1032172_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.1	8.7e-66
WP_002459448.1|1032164_1033649_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.8	3.2e-45
WP_002478379.1|1033627_1035817_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	37.7	1.0e-135
WP_002478380.1|1035809_1036481_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_002459451.1|1036482_1036743_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002478381.1|1036742_1037447_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	42.4	4.0e-46
WP_002478382.1|1037447_1038575_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002478383.1|1038561_1039044_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.7	6.8e-21
>prophage 6
NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	2647211	1324496	1342406	2647211		uncultured_Caudovirales_phage(58.33%)	15	NA	NA
WP_002479351.1|1324496_1325450_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.5	2.5e-06
WP_002492143.1|1325436_1326414_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.3	5.8e-136
WP_002459737.1|1326973_1328008_-	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002459738.1|1328124_1328907_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.2	1.5e-14
WP_002479353.1|1328903_1329863_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	62.0	4.1e-09
WP_002459740.1|1329843_1330821_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	81.4	4.4e-144
WP_002459741.1|1331189_1332158_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	92.9	5.7e-176
WP_002459742.1|1332397_1334503_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_002459743.1|1334465_1334864_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	76.5	4.3e-53
WP_014533353.1|1335737_1336607_+	DMT family transporter	NA	NA	NA	NA	NA
WP_002479355.1|1336619_1337120_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	1.0e-51
WP_037553882.1|1337404_1338910_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.9	1.2e-60
WP_002479357.1|1339237_1340152_+	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA	NA
WP_002479359.1|1340582_1341113_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	37.8	1.3e-28
WP_002459751.1|1341350_1342406_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.7	3.0e-21
>prophage 7
NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	2647211	1356928	1363549	2647211		Pandoravirus(16.67%)	8	NA	NA
WP_002459762.1|1356928_1358080_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.1	6.0e-23
WP_002479366.1|1358063_1358660_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.5	1.4e-39
WP_002459764.1|1358995_1359667_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.9e-68
WP_002459765.1|1359668_1360088_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_002459766.1|1360087_1360804_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	40.7	1.8e-49
WP_002459767.1|1360902_1361493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002479367.1|1361533_1362556_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	41.9	4.2e-60
WP_002479368.1|1362712_1363549_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	44.4	9.6e-63
>prophage 8
NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	2647211	2636638	2645064	2647211		Staphylococcus_phage(58.33%)	13	NA	NA
WP_002478853.1|2636638_2638021_-	recombinase family protein	NA	A0A2H4JD28	uncultured_Caudovirales_phage	64.0	6.9e-167
WP_002478854.1|2638077_2639001_-	DUF5067 domain-containing protein	NA	H9A0K2	Staphylococcus_phage	76.1	1.7e-92
WP_002478855.1|2639056_2639668_-	helix-turn-helix domain-containing protein	NA	A0A2H4JCV3	uncultured_Caudovirales_phage	95.6	1.1e-105
WP_002474229.1|2639839_2640067_+	hypothetical protein	NA	A0A1Q1PVU3	Staphylococcus_phage	97.3	8.1e-33
WP_002478856.1|2640094_2641048_+	hypothetical protein	NA	H9A0Q6	Staphylococcus_phage	49.2	2.5e-43
WP_002478857.1|2641044_2641812_+	hypothetical protein	NA	U3PJ35	Staphylococcus_phage	68.8	1.0e-95
WP_002478858.1|2641880_2642192_+	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	61.1	9.4e-40
WP_002478859.1|2642139_2642523_-	hypothetical protein	NA	A0A097PAT1	Streptococcus_pyogenes_phage	30.8	7.3e-10
WP_002478860.1|2642580_2643333_+	hypothetical protein	NA	S4SW96	Staphylococcus_phage	98.4	3.1e-137
WP_002478861.1|2643348_2643492_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	95.7	9.6e-16
WP_150861605.1|2643501_2644104_-	hypothetical protein	NA	B7T096	Staphylococcus_virus	93.4	1.5e-97
WP_002478864.1|2644330_2644510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002478865.1|2644578_2645064_+	siphovirus Gp157 family protein	NA	H9A0R4	Staphylococcus_phage	76.4	1.8e-61
