assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008728795.1_ASM872879v1	NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	1	441409-441499	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	AAACTCGTCATGCTCGTTAAGTGC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA,NA	NA|410aa|up_9|NZ_CP041727.1_427640_428870_+	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|286aa|up_8|NZ_CP041727.1_428958_429816_+	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|315aa|up_7|NZ_CP041727.1_429817_430762_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|323aa|up_6|NZ_CP041727.1_430924_431893_+	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|587aa|up_5|NZ_CP041727.1_431910_433671_+	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|453aa|up_4|NZ_CP041727.1_434224_435583_-	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional	NA|373aa|up_3|NZ_CP041727.1_435924_437043_+	PRK14035, PRK14035, citrate synthase; Provisional	NA|423aa|up_2|NZ_CP041727.1_437090_438359_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|237aa|up_1|NZ_CP041727.1_438562_439273_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|570aa|up_0|NZ_CP041727.1_439272_440982_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|878aa|down_0|NZ_CP041727.1_441546_444180_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|291aa|down_1|NZ_CP041727.1_444196_445069_+	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|202aa|down_2|NZ_CP041727.1_445084_445690_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|334aa|down_3|NZ_CP041727.1_445836_446838_+	PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated	NA|336aa|down_4|NZ_CP041727.1_447012_448020_+	PRK06256, PRK06256, biotin synthase; Validated	NA|157aa|down_5|NZ_CP041727.1_448336_448807_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|459aa|down_6|NZ_CP041727.1_448807_450184_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|307aa|down_7|NZ_CP041727.1_450183_451104_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|646aa|down_8|NZ_CP041727.1_451463_453401_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|498aa|down_9|NZ_CP041727.1_453864_455358_+	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]
GCF_008728795.1_ASM872879v1	NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	2	1005658-1005744	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	TGTTGGGGCCCCACCCCAACTCGCGTTGTT	30	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA,NA	NA|272aa|up_9|NZ_CP041727.1_995878_996694_-	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|185aa|up_8|NZ_CP041727.1_996876_997431_+	pfam06335, DUF1054, Protein of unknown function (DUF1054)	NA|451aa|up_7|NZ_CP041727.1_997749_999102_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|152aa|up_6|NZ_CP041727.1_999364_999820_-	pfam13273, DUF4064, Protein of unknown function (DUF4064)	NA|349aa|up_5|NZ_CP041727.1_999951_1000998_-	pfam13273, DUF4064, Protein of unknown function (DUF4064)	NA|358aa|up_4|NZ_CP041727.1_1001070_1002144_-	cd13663, PBP2_PotD_PotF_like_2, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold	NA|271aa|up_3|NZ_CP041727.1_1002140_1002953_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|266aa|up_2|NZ_CP041727.1_1002958_1003756_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|365aa|up_1|NZ_CP041727.1_1003748_1004843_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|180aa|up_0|NZ_CP041727.1_1004857_1005397_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|96aa|down_0|NZ_CP041727.1_1005782_1006070_-	PRK04387, PRK04387, hypothetical protein; Provisional	NA|469aa|down_1|NZ_CP041727.1_1006273_1007680_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|435aa|down_2|NZ_CP041727.1_1007683_1008988_-	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed	NA|326aa|down_3|NZ_CP041727.1_1009200_1010178_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|371aa|down_4|NZ_CP041727.1_1010181_1011294_-	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit	NA|210aa|down_5|NZ_CP041727.1_1011460_1012090_-	pfam10368, YkyA, Putative cell-wall binding lipoprotein	NA|184aa|down_6|NZ_CP041727.1_1012227_1012779_+	PRK00150, def, peptide deformylase; Reviewed	NA|73aa|down_7|NZ_CP041727.1_1013213_1013432_+	PRK13667, PRK13667, hypothetical protein; Provisional	NA|560aa|down_8|NZ_CP041727.1_1013431_1015111_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|220aa|down_9|NZ_CP041727.1_1015705_1016365_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_008728795.1_ASM872879v1	NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	3	1098457-1098551	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	TTCCCCAGCTTGCACATTTCTGTTGAATTTCTTAC	35	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA|116aa|up_3|NZ_CP041727.1_1095820_1096168_-,NA	NA|257aa|up_9|NZ_CP041727.1_1089169_1089940_-	PRK08594, PRK08594, enoyl-[acyl-carrier-protein] reductase FabI	NA|615aa|up_8|NZ_CP041727.1_1090227_1092072_-	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	NA|462aa|up_7|NZ_CP041727.1_1092082_1093468_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|285aa|up_6|NZ_CP041727.1_1093493_1094348_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|270aa|up_5|NZ_CP041727.1_1094344_1095154_-	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|212aa|up_4|NZ_CP041727.1_1095168_1095804_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|116aa|up_3|NZ_CP041727.1_1095820_1096168_-	NA	NA|191aa|up_2|NZ_CP041727.1_1096361_1096934_+	COG4116, COG4116, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_1|NZ_CP041727.1_1097033_1097399_+	COG2346, COG2346, Truncated hemoglobins [General function prediction only]	NA|266aa|up_0|NZ_CP041727.1_1097421_1098219_+	pfam13743, Thioredoxin_5, Thioredoxin	NA|603aa|down_0|NZ_CP041727.1_1098865_1100674_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|324aa|down_1|NZ_CP041727.1_1100725_1101697_-	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease    domain [General function prediction only]	NA|244aa|down_2|NZ_CP041727.1_1101797_1102529_-	PRK02315, PRK02315, adaptor protein MecA	NA|132aa|down_3|NZ_CP041727.1_1102749_1103145_-	PRK01655, spxA, transcriptional regulator Spx; Reviewed	NA|330aa|down_4|NZ_CP041727.1_1103432_1104422_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|252aa|down_5|NZ_CP041727.1_1104608_1105364_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|551aa|down_6|NZ_CP041727.1_1105572_1107225_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|314aa|down_7|NZ_CP041727.1_1107250_1108192_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|361aa|down_8|NZ_CP041727.1_1108181_1109264_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|355aa|down_9|NZ_CP041727.1_1109278_1110343_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_008728795.1_ASM872879v1	NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	4	1643059-1643141	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	CACCCCAACTTGCTTTGCTTGGTGAA	26	1	5	1643085-1643115|1643085-1643115|1643085-1643115|1643085-1643115|1643085-1643115	NZ_CP041727.1_1427634-1427664|NZ_CP041727.1_717660-717690|NZ_CP041727.1_1978276-1978306|NZ_CP041727.1_1609520-1609490|NZ_CP041727.1_2215929-2215899	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA|90aa|up_1|NZ_CP041727.1_1641186_1641456_+,NA|85aa|down_9|NZ_CP041727.1_1654449_1654704_-	NA|546aa|up_9|NZ_CP041727.1_1627739_1629377_-	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|482aa|up_8|NZ_CP041727.1_1629453_1630899_-	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component	NA|492aa|up_7|NZ_CP041727.1_1631331_1632807_-	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|1499aa|up_6|NZ_CP041727.1_1632824_1637321_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|295aa|up_5|NZ_CP041727.1_1637464_1638349_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|372aa|up_4|NZ_CP041727.1_1638444_1639560_+	COG5438, COG5438, Predicted multitransmembrane protein [Function unknown]	NA|261aa|up_3|NZ_CP041727.1_1639556_1640339_+	COG5438, COG5438, Predicted multitransmembrane protein [Function unknown]	NA|132aa|up_2|NZ_CP041727.1_1640671_1641067_-	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|90aa|up_1|NZ_CP041727.1_1641186_1641456_+	NA	NA|324aa|up_0|NZ_CP041727.1_1641661_1642633_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|280aa|down_0|NZ_CP041727.1_1643439_1644279_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|220aa|down_1|NZ_CP041727.1_1644310_1644970_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|341aa|down_2|NZ_CP041727.1_1644972_1645995_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|581aa|down_3|NZ_CP041727.1_1646199_1647942_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|594aa|down_4|NZ_CP041727.1_1647938_1649720_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|382aa|down_5|NZ_CP041727.1_1650003_1651149_-	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA|299aa|down_6|NZ_CP041727.1_1651155_1652052_-	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|177aa|down_7|NZ_CP041727.1_1652339_1652870_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|444aa|down_8|NZ_CP041727.1_1652976_1654308_-	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|85aa|down_9|NZ_CP041727.1_1654449_1654704_-	NA
GCF_008728795.1_ASM872879v1	NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	5	1804744-1805212	1,5,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Type III-B,Type III-A,Type III-D,Type III-C	AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC,AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC,AATCAGAGAATACCCCGTATAAAAGGGGACGAGAAC	36,36,36	0	0	NA	NA	NA:NA:NA	5,6,6	6	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA,NA|118aa|down_0|NZ_CP041727.1_1805405_1805759_+,NA|109aa|down_8|NZ_CP041727.1_1820227_1820554_+,NA|96aa|down_9|NZ_CP041727.1_1820556_1820844_+	NA|292aa|up_9|NZ_CP041727.1_1794622_1795498_-	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	cas1|302aa|up_8|NZ_CP041727.1_1796002_1796908_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|102aa|up_7|NZ_CP041727.1_1796907_1797213_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas10|758aa|up_6|NZ_CP041727.1_1797228_1799502_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|142aa|up_5|NZ_CP041727.1_1799503_1799929_+	cd09647, Csm2_III-A, CRISPR/Cas system-associated protein Csm2	csm3gr7|215aa|up_4|NZ_CP041727.1_1799930_1800575_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|303aa|up_3|NZ_CP041727.1_1800585_1801494_+	TIGR01903, Hypothetical_protein	csm5gr7|337aa|up_2|NZ_CP041727.1_1801497_1802508_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm6|370aa|up_1|NZ_CP041727.1_1802698_1803808_+	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	cas6|251aa|up_0|NZ_CP041727.1_1803804_1804557_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|118aa|down_0|NZ_CP041727.1_1805405_1805759_+	NA	NA|209aa|down_1|NZ_CP041727.1_1806111_1806738_-	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism]	NA|2394aa|down_2|NZ_CP041727.1_1806734_1813916_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|262aa|down_3|NZ_CP041727.1_1815360_1816146_+	pfam04507, DUF576, Csa1 family	NA|256aa|down_4|NZ_CP041727.1_1816236_1817004_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_5|NZ_CP041727.1_1817073_1817859_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_6|NZ_CP041727.1_1818120_1818906_+	pfam04507, DUF576, Csa1 family	NA|442aa|down_7|NZ_CP041727.1_1818902_1820228_+	cd00519, Lipase_3, Lipase (class 3)	NA|109aa|down_8|NZ_CP041727.1_1820227_1820554_+	NA	NA|96aa|down_9|NZ_CP041727.1_1820556_1820844_+	NA
GCF_008728795.1_ASM872879v1	NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	6	2144026-2144109	6	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	AACCCCAACTTGCTTTGCTTGGCGAA	26	1	5	2144052-2144083|2144052-2144083|2144052-2144083|2144052-2144083|2144052-2144083	NZ_CP041727.1_717660-717691|NZ_CP041727.1_1609520-1609489|NZ_CP041727.1_1994700-1994669|NZ_CP041727.1_1994757-1994726|NZ_CP041727.1_2215929-2215898	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA,NA	NA|260aa|up_9|NZ_CP041727.1_2132705_2133485_+	PRK06136, PRK06136, uroporphyrinogen-III C-methyltransferase	NA|204aa|up_8|NZ_CP041727.1_2133505_2134117_+	PRK06718, PRK06718, NAD(P)-binding protein	NA|300aa|up_7|NZ_CP041727.1_2134134_2135034_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|393aa|up_6|NZ_CP041727.1_2135056_2136235_+	PRK04149, sat, sulfate adenylyltransferase; Reviewed	NA|200aa|up_5|NZ_CP041727.1_2136251_2136851_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|407aa|up_4|NZ_CP041727.1_2137155_2138376_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|257aa|up_3|NZ_CP041727.1_2138764_2139535_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|616aa|up_2|NZ_CP041727.1_2139733_2141581_+	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|179aa|up_1|NZ_CP041727.1_2141582_2142119_+	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|431aa|up_0|NZ_CP041727.1_2142475_2143768_+	PRK09412, PRK09412, anaerobic C4-dicarboxylate transporter; Reviewed	NA|542aa|down_0|NZ_CP041727.1_2144690_2146316_+	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]	NA|187aa|down_1|NZ_CP041727.1_2146368_2146929_-	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|497aa|down_2|NZ_CP041727.1_2147296_2148787_+	cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like	NA|569aa|down_3|NZ_CP041727.1_2148878_2150585_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|393aa|down_4|NZ_CP041727.1_2150832_2152011_+	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085	NA|90aa|down_5|NZ_CP041727.1_2152149_2152419_+	pfam06855, YozE_SAM_like, YozE SAM-like fold	NA|150aa|down_6|NZ_CP041727.1_2152408_2152858_+	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]	NA|531aa|down_7|NZ_CP041727.1_2153494_2155087_+	cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)	NA|875aa|down_8|NZ_CP041727.1_2155335_2157960_+	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional	NA|272aa|down_9|NZ_CP041727.1_2157964_2158780_+	PRK05339, PRK05339, pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator
GCF_008728795.1_ASM872879v1	NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	7	2326598-2326679	7	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	GCAAGTTGGGGTGGGGCCCCAACAAA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA|64aa|up_8|NZ_CP041727.1_2315573_2315765_+,NA|508aa|down_5|NZ_CP041727.1_2332469_2333993_+	NA|452aa|up_9|NZ_CP041727.1_2314034_2315390_+	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase	NA|64aa|up_8|NZ_CP041727.1_2315573_2315765_+	NA	NA|89aa|up_7|NZ_CP041727.1_2315919_2316186_-	pfam07205, DUF1413, Domain of unknown function (DUF1413)	NA|232aa|up_6|NZ_CP041727.1_2316340_2317036_+	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|412aa|up_5|NZ_CP041727.1_2317235_2318471_+	PRK08596, PRK08596, acetylornithine deacetylase; Validated	NA|722aa|up_4|NZ_CP041727.1_2318969_2321135_-	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|513aa|up_3|NZ_CP041727.1_2321227_2322766_-	TIGR03706, exo_poly_only, exopolyphosphatase	NA|516aa|up_2|NZ_CP041727.1_2323075_2324623_-	pfam03806, ABG_transport, AbgT putative transporter family	NA|359aa|up_1|NZ_CP041727.1_2324857_2325934_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|152aa|up_0|NZ_CP041727.1_2326099_2326555_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|427aa|down_0|NZ_CP041727.1_2326925_2328206_-	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]	NA|277aa|down_1|NZ_CP041727.1_2328735_2329566_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|269aa|down_2|NZ_CP041727.1_2329562_2330369_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|258aa|down_3|NZ_CP041727.1_2330370_2331144_-	TIGR02315, Phosphonates_import_ATP-binding_protein_PhnC, phosphonate ABC transporter, ATP-binding protein	NA|318aa|down_4|NZ_CP041727.1_2331269_2332223_-	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|508aa|down_5|NZ_CP041727.1_2332469_2333993_+	NA	NA|513aa|down_6|NZ_CP041727.1_2334009_2335548_+	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|526aa|down_7|NZ_CP041727.1_2335799_2337377_-	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|255aa|down_8|NZ_CP041727.1_2337692_2338457_+	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]	NA|260aa|down_9|NZ_CP041727.1_2338479_2339259_+	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]
GCF_008728795.1_ASM872879v1	NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	8	2358906-2358986	8	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	ACGGATAACGCAAGCTGGGGTGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA|122aa|up_7|NZ_CP041727.1_2353077_2353443_+,NA|315aa|down_9|NZ_CP041727.1_2371093_2372038_+	NA|227aa|up_9|NZ_CP041727.1_2351799_2352480_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|91aa|up_8|NZ_CP041727.1_2352789_2353062_+	TIGR04197, conserved_hypothetical_protein, type VII secretion effector, SACOL2603 family	NA|122aa|up_7|NZ_CP041727.1_2353077_2353443_+	NA	NA|486aa|up_6|NZ_CP041727.1_2353432_2354890_+	pfam04740, LXG, LXG domain of WXG superfamily	NA|209aa|up_5|NZ_CP041727.1_2354892_2355519_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|219aa|up_4|NZ_CP041727.1_2355568_2356225_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|104aa|up_3|NZ_CP041727.1_2356221_2356533_+	COG4495, COG4495, Uncharacterized protein conserved in bacteria [Function unknown]	NA|214aa|up_2|NZ_CP041727.1_2356666_2357308_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|234aa|up_1|NZ_CP041727.1_2357579_2358281_-	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|154aa|up_0|NZ_CP041727.1_2358280_2358742_-	PRK04125, PRK04125, antiholin-like protein LrgA	NA|254aa|down_0|NZ_CP041727.1_2359252_2360014_-	PRK14084, PRK14084, DNA-binding response regulator	NA|585aa|down_1|NZ_CP041727.1_2360014_2361769_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|465aa|down_2|NZ_CP041727.1_2362076_2363471_+	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|311aa|down_3|NZ_CP041727.1_2363653_2364586_+	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|89aa|down_4|NZ_CP041727.1_2364767_2365034_+	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|284aa|down_5|NZ_CP041727.1_2365237_2366089_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|274aa|down_6|NZ_CP041727.1_2366152_2366974_-	PRK01622, PRK01622, membrane protein insertase YidC	NA|504aa|down_7|NZ_CP041727.1_2367085_2368597_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|609aa|down_8|NZ_CP041727.1_2368878_2370705_+	pfam13520, AA_permease_2, Amino acid permease	NA|315aa|down_9|NZ_CP041727.1_2371093_2372038_+	NA
GCF_008728795.1_ASM872879v1	NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	9	2447120-2447268	2	PILER-CR	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	TTTGTTGGGGCCCCACCCCAACTTGCTTTGTCCGTTGCCTTTCTTTTG	48	1	2	2447177-2447193|2447177-2447193	NZ_CP041727.1_147775-147791|NZ_CP041727.1_1371018-1371002	NA	2	2	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA,NA|126aa|down_2|NZ_CP041727.1_2450278_2450656_-,NA|71aa|down_3|NZ_CP041727.1_2450673_2450886_-,NA|102aa|down_4|NZ_CP041727.1_2451360_2451666_-	NA|151aa|up_9|NZ_CP041727.1_2435400_2435853_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|572aa|up_8|NZ_CP041727.1_2435865_2437581_-	PRK13207, ureC, urease subunit alpha; Reviewed	NA|136aa|up_7|NZ_CP041727.1_2437580_2437988_-	PRK13201, ureB, urease subunit beta; Reviewed	NA|101aa|up_6|NZ_CP041727.1_2438000_2438303_-	PRK13241, ureA, urease subunit gamma; Provisional	NA|299aa|up_5|NZ_CP041727.1_2438510_2439407_+	TIGR03441, urea_trans_yut, urea transporter, Yersinia type	NA|196aa|up_4|NZ_CP041727.1_2439626_2440214_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|592aa|up_3|NZ_CP041727.1_2440417_2442193_+	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|579aa|up_2|NZ_CP041727.1_2442910_2444647_+	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|302aa|up_1|NZ_CP041727.1_2445201_2446107_+	COG2962, RarD, Predicted permeases [General function prediction only]	NA|215aa|up_0|NZ_CP041727.1_2446337_2446982_+	TIGR01218, conserved_hypothetical_protein, tandem five-transmembrane protein	NA|211aa|down_0|NZ_CP041727.1_2447504_2448137_+	pfam01944, SpoIIM, Stage II sporulation protein M	NA|538aa|down_1|NZ_CP041727.1_2448464_2450078_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|126aa|down_2|NZ_CP041727.1_2450278_2450656_-	NA	NA|71aa|down_3|NZ_CP041727.1_2450673_2450886_-	NA	NA|102aa|down_4|NZ_CP041727.1_2451360_2451666_-	NA	NA|212aa|down_5|NZ_CP041727.1_2451864_2452500_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|383aa|down_6|NZ_CP041727.1_2452707_2453856_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|284aa|down_7|NZ_CP041727.1_2453995_2454847_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|177aa|down_8|NZ_CP041727.1_2454890_2455421_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|204aa|down_9|NZ_CP041727.1_2455847_2456459_-	pfam01381, HTH_3, Helix-turn-helix
GCF_008728795.1_ASM872879v1	NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	10	2499842-2499928	9	CRISPRCasFinder	no		csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Orphan	GCAAGTTGGGGTGGGGCCCCAACACAAAGA	30	1	3	2499872-2499898|2499872-2499898|2499872-2499898	NZ_CP041727.1_1919794-1919820|NZ_CP041727.1_2542693-2542719|NZ_CP041727.1_2542750-2542776	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA,NA|130aa|down_2|NZ_CP041727.1_2501990_2502380_-	NA|225aa|up_9|NZ_CP041727.1_2489059_2489734_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|354aa|up_8|NZ_CP041727.1_2489861_2490923_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|223aa|up_7|NZ_CP041727.1_2490919_2491588_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|318aa|up_6|NZ_CP041727.1_2491678_2492632_-	cd06259, YdcF-like, YdcF-like	NA|154aa|up_5|NZ_CP041727.1_2492807_2493269_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|458aa|up_4|NZ_CP041727.1_2493366_2494740_+	COG4640, COG4640, Predicted membrane protein [Function unknown]	NA|402aa|up_3|NZ_CP041727.1_2494841_2496047_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|184aa|up_2|NZ_CP041727.1_2496488_2497040_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|216aa|up_1|NZ_CP041727.1_2497172_2497820_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|655aa|up_0|NZ_CP041727.1_2497832_2499797_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|236aa|down_0|NZ_CP041727.1_2500133_2500841_-	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]	NA|303aa|down_1|NZ_CP041727.1_2501049_2501958_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|130aa|down_2|NZ_CP041727.1_2501990_2502380_-	NA	NA|156aa|down_3|NZ_CP041727.1_2502385_2502853_-	pfam13279, 4HBT_2, Thioesterase-like superfamily	NA|316aa|down_4|NZ_CP041727.1_2502971_2503919_+	cd12831, TmCorA-like_u2, Uncharacterized bacterial subfamily of the Thermotoga maritima CorA-like family	NA|351aa|down_5|NZ_CP041727.1_2503964_2505017_+	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional	NA|203aa|down_6|NZ_CP041727.1_2505141_2505750_-	cd00540, AAG, Alkyladenine DNA glycosylase catalyzes the first step in base excision repair	NA|72aa|down_7|NZ_CP041727.1_2505987_2506203_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|337aa|down_8|NZ_CP041727.1_2506757_2507768_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|218aa|down_9|NZ_CP041727.1_2507843_2508497_-	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_008728795.1_ASM872879v1	NZ_CP041727	Staphylococcus lugdunensis strain SL122 chromosome, complete genome	11	2535798-2535877	10	CRISPRCasFinder	no	WYL	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	Unclear	TCGATCAAAGCAAGTTGGGGTGG	23	1	6	2535821-2535854|2535821-2535854|2535821-2535854|2535821-2535854|2535821-2535854|2535821-2535854	NZ_CP041727.1_1317094-1317127|NZ_CP041727.1_236247-236214|NZ_CP041727.1_397471-397504|NZ_CP041727.1_986495-986528|NZ_CP041727.1_1340372-1340405|NZ_CP041727.1_1784365-1784332	NA	1	1	Orphan	csa3,DEDDh,cas3,DinG,cas1,cas2,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csm6,cas6,WYL	NA|78aa|up_1|NZ_CP041727.1_2534398_2534632_+,NA|61aa|down_7|NZ_CP041727.1_2542628_2542811_+	NA|463aa|up_9|NZ_CP041727.1_2524062_2525451_-	PRK09586, murP, PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed	NA|296aa|up_8|NZ_CP041727.1_2525464_2526352_-	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|350aa|up_7|NZ_CP041727.1_2526348_2527398_-	pfam05913, DUF871, Bacterial protein of unknown function (DUF871)	WYL|230aa|up_6|NZ_CP041727.1_2527566_2528256_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|259aa|up_5|NZ_CP041727.1_2528646_2529423_+	cd01637, IMPase_like, Inositol-monophosphatase-like domains	NA|317aa|up_4|NZ_CP041727.1_2529541_2530492_+	PRK09379, PRK09379, LytR family transcriptional regulator	NA|985aa|up_3|NZ_CP041727.1_2530791_2533746_+	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|157aa|up_2|NZ_CP041727.1_2533745_2534216_+	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|78aa|up_1|NZ_CP041727.1_2534398_2534632_+	NA	NA|258aa|up_0|NZ_CP041727.1_2534651_2535425_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|318aa|down_0|NZ_CP041727.1_2536149_2537103_-	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|105aa|down_1|NZ_CP041727.1_2537171_2537486_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|111aa|down_2|NZ_CP041727.1_2537485_2537818_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|179aa|down_3|NZ_CP041727.1_2538230_2538767_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|141aa|down_4|NZ_CP041727.1_2539065_2539488_-	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|358aa|down_5|NZ_CP041727.1_2539719_2540793_+	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|464aa|down_6|NZ_CP041727.1_2540835_2542227_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|61aa|down_7|NZ_CP041727.1_2542628_2542811_+	NA	NA|246aa|down_8|NZ_CP041727.1_2542937_2543675_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|659aa|down_9|NZ_CP041727.1_2544245_2546222_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
