assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008802915.1_ASM880291v1	NZ_CP044354	Lactobacillus fermentum strain 2760 chromosome, complete genome	1	908332-910017	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas14j,cas9,cas1,cas2,csn2,Cas14u_CAS-V	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type II-C,Type II-A,Type II-B	GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC,GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	36,36,36	0	0	NA	NA	NA:NA:NA	24,25,25	25	TypeII-C,TypeII-A,TypeII-B,TypeV	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA,NA|194aa|down_3|NZ_CP044354.1_911808_912390_+,NA|109aa|down_6|NZ_CP044354.1_915534_915861_+,NA|114aa|down_9|NZ_CP044354.1_917687_918029_+	NA|148aa|up_9|NZ_CP044354.1_895715_896159_+	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional	NA|271aa|up_8|NZ_CP044354.1_896173_896986_+	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|214aa|up_7|NZ_CP044354.1_897047_897689_-	PRK00043, thiE, thiamine phosphate synthase	NA|266aa|up_6|NZ_CP044354.1_897853_898651_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|255aa|up_5|NZ_CP044354.1_898673_899438_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|656aa|up_4|NZ_CP044354.1_899883_901851_+	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein	cas9|1382aa|up_3|NZ_CP044354.1_902106_906252_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NZ_CP044354.1_906446_907352_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|up_1|NZ_CP044354.1_907329_907635_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|224aa|up_0|NZ_CP044354.1_907631_908303_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|153aa|down_0|NZ_CP044354.1_910257_910716_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|131aa|down_1|NZ_CP044354.1_910731_911124_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|77aa|down_2|NZ_CP044354.1_911248_911479_-	COG2336, MazE, Growth regulator [Signal transduction mechanisms]	NA|194aa|down_3|NZ_CP044354.1_911808_912390_+	NA	Cas14u_CAS-V|415aa|down_4|NZ_CP044354.1_912505_913750_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|318aa|down_5|NZ_CP044354.1_914021_914975_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|109aa|down_6|NZ_CP044354.1_915534_915861_+	NA	NA|321aa|down_7|NZ_CP044354.1_915916_916879_+	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|250aa|down_8|NZ_CP044354.1_916878_917628_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|114aa|down_9|NZ_CP044354.1_917687_918029_+	NA
GCF_008802915.1_ASM880291v1	NZ_CP044354	Lactobacillus fermentum strain 2760 chromosome, complete genome	2	1173005-1174344	2,2,2	CRISPRCasFinder,PILER-CR,CRT	no	cas2,cas1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type III-D,Type III-B,Type III-A,Type III-C	GTTTTCGTCTCCTTCTGGCGGAGATCAGTTTATATC,GTTTTCGTCTCCTTCTGGCGGAGATCAGTTTATATC,GTTTTCGTCTCCTTCTGGCGGAGATCAGTTTATATC	36,36,36	0	0	NA	NA	NA:NA:NA	18,17,17	18	TypeIII-D,TypeIII-B,TypeIII-A,TypeIII-C	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|65aa|up_0|NZ_CP044354.1_1172670_1172865_-,NA|251aa|down_7|NZ_CP044354.1_1182627_1183380_-	NA|374aa|up_9|NZ_CP044354.1_1160952_1162074_-	pfam13204, DUF4038, Protein of unknown function (DUF4038)	NA|48aa|up_8|NZ_CP044354.1_1162086_1162230_-	pfam13204, DUF4038, Protein of unknown function (DUF4038)	NA|317aa|up_7|NZ_CP044354.1_1163679_1164630_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|236aa|up_6|NZ_CP044354.1_1164732_1165440_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|400aa|up_5|NZ_CP044354.1_1166756_1167956_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|223aa|up_4|NZ_CP044354.1_1167968_1168637_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	cas2|102aa|up_3|NZ_CP044354.1_1169297_1169603_-	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas1|303aa|up_2|NZ_CP044354.1_1169604_1170513_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	NA|119aa|up_1|NZ_CP044354.1_1172324_1172681_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|65aa|up_0|NZ_CP044354.1_1172670_1172865_-	NA	csm5gr7|339aa|down_0|NZ_CP044354.1_1174508_1175525_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|306aa|down_1|NZ_CP044354.1_1175521_1176439_-	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm3gr7|222aa|down_2|NZ_CP044354.1_1176440_1177106_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|134aa|down_3|NZ_CP044354.1_1177115_1177517_-	pfam03750, Csm2_III-A, Csm2 Type III-A	cas10|776aa|down_4|NZ_CP044354.1_1177521_1179849_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|265aa|down_5|NZ_CP044354.1_1179829_1180624_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|575aa|down_6|NZ_CP044354.1_1180817_1182542_-	pfam09848, DUF2075, Uncharacterized conserved protein (DUF2075)	NA|251aa|down_7|NZ_CP044354.1_1182627_1183380_-	NA	NA|187aa|down_8|NZ_CP044354.1_1183562_1184123_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|205aa|down_9|NZ_CP044354.1_1184466_1185081_+	pfam13518, HTH_28, Helix-turn-helix domain
GCF_008802915.1_ASM880291v1	NZ_CP044354	Lactobacillus fermentum strain 2760 chromosome, complete genome	3	1394776-1396149	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Type I-E	GGATCACCCCCATATACATGGGGAGCAC,GGATCACCCCCATATACATGGGGAGCAC,GGATCACCCCCATATACATGGGGAGCAC	28,28,28	0	0	NA	NA	NA:NA:NA	22,22,21	22	TypeI-E	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA|65aa|up_0|NZ_CP044354.1_1394246_1394441_-,NA	NA|444aa|up_9|NZ_CP044354.1_1378189_1379521_-	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]	NA|580aa|up_8|NZ_CP044354.1_1380199_1381939_+	PRK08611, PRK08611, pyruvate oxidase; Provisional	NA|396aa|up_7|NZ_CP044354.1_1384315_1385503_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|306aa|up_6|NZ_CP044354.1_1385732_1386650_-	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|361aa|up_5|NZ_CP044354.1_1389821_1390904_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|430aa|up_4|NZ_CP044354.1_1390905_1392195_-	PRK09357, pyrC, dihydroorotase; Validated	NA|322aa|up_3|NZ_CP044354.1_1392194_1393160_-	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|151aa|up_2|NZ_CP044354.1_1393496_1393949_-	PRK05463, PRK05463, putative hydro-lyase	NA|63aa|up_1|NZ_CP044354.1_1393884_1394073_+	pfam13333, rve_2, Integrase core domain	NA|65aa|up_0|NZ_CP044354.1_1394246_1394441_-	NA	DEDDh|293aa|down_0|NZ_CP044354.1_1396178_1397057_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	cas1|313aa|down_1|NZ_CP044354.1_1397060_1397999_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|219aa|down_2|NZ_CP044354.1_1397995_1398652_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|236aa|down_3|NZ_CP044354.1_1398664_1399372_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|366aa|down_4|NZ_CP044354.1_1399352_1400450_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|195aa|down_5|NZ_CP044354.1_1400461_1401046_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|555aa|down_6|NZ_CP044354.1_1401062_1402727_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|914aa|down_7|NZ_CP044354.1_1402707_1405449_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|120aa|down_8|NZ_CP044354.1_1405679_1406039_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|476aa|down_9|NZ_CP044354.1_1406159_1407587_-	TIGR00909, putative_amino_acid_transporter, amino acid transporter
GCF_008802915.1_ASM880291v1	NZ_CP044354	Lactobacillus fermentum strain 2760 chromosome, complete genome	4	1615728-1616200	4	CRISPRCasFinder	no		cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	Orphan	CCATCATCACCAAAGTAGTACATCTTCCCCCA	32	0	0	NA	NA	NA	7	7	Orphan	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,Cas14u_CAS-V,WYL,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	NA,NA|408aa|down_6|NZ_CP044354.1_1624681_1625905_-	NA|566aa|up_9|NZ_CP044354.1_1602983_1604681_-	COG5617, COG5617, Predicted integral membrane protein [Function unknown]	NA|322aa|up_8|NZ_CP044354.1_1604715_1605681_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|303aa|up_7|NZ_CP044354.1_1605776_1606685_-	cd04185, GT_2_like_b, Subfamily of Glycosyltransferase Family GT2 of unknown function	NA|344aa|up_6|NZ_CP044354.1_1606702_1607734_-	PRK09814, PRK09814, sugar transferase	NA|527aa|up_5|NZ_CP044354.1_1607772_1609353_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|326aa|up_4|NZ_CP044354.1_1609571_1610549_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|370aa|up_3|NZ_CP044354.1_1610637_1611747_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|311aa|up_2|NZ_CP044354.1_1611746_1612679_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|188aa|up_1|NZ_CP044354.1_1612768_1613332_-	PHA03307, PHA03307, transcriptional regulator ICP4; Provisional	NA|492aa|up_0|NZ_CP044354.1_1613474_1614950_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|386aa|down_0|NZ_CP044354.1_1617243_1618401_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|476aa|down_1|NZ_CP044354.1_1618753_1620181_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|374aa|down_2|NZ_CP044354.1_1620183_1621305_-	COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]	NA|396aa|down_3|NZ_CP044354.1_1621531_1622719_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|384aa|down_4|NZ_CP044354.1_1622879_1624031_-	pfam01757, Acyl_transf_3, Acyltransferase family	NA|206aa|down_5|NZ_CP044354.1_1624089_1624707_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|408aa|down_6|NZ_CP044354.1_1624681_1625905_-	NA	NA|254aa|down_7|NZ_CP044354.1_1625915_1626677_-	pfam14393, DUF4422, Domain of unknown function (DUF4422)	NA|225aa|down_8|NZ_CP044354.1_1626688_1627363_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|273aa|down_9|NZ_CP044354.1_1627511_1628330_-	PRK14135, recX, recombination regulator RecX; Provisional
